Gvermi7924.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7924.t1
Unique NameGvermi7924.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:9059..10020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1259795.ARJK01000002_gene3
Preferred nameligA
PFAMsBRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5
Max annot lvl186801|Clostridia
KEGG rclassRC00005
KEGG koko:K01972
KEGG ReactionR00382
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
Evalue5.64e-52
EggNOG OGsCOG0272@1|root,COG0272@2|Bacteria,1TPQ3@1239|Firmicutes,248AX@186801|Clostridia,42F6C@68295|Thermoanaerobacterales
EC6.5.1.2
DescriptionDNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7924Gvermi7924Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 9059..10020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7924.t1Gvermi7924.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 9059..10020 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7924.t1.start1Gvermi7924.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 9059..9061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7924.t1.CDS1Gvermi7924.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 9059..9528 +
Gvermi7924.t1.CDS2Gvermi7924.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 9651..10020 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7924.t1.exon1Gvermi7924.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 9059..9528 +
Gvermi7924.t1.exon2Gvermi7924.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 9651..10020 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7924.t1.intron1Gvermi7924.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 9529..9650 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7924.t1.stop1Gvermi7924.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 10018..10020 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7924.t1 ID=Gvermi7924.t1|Name=Gvermi7924.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=280bp
MPRHQTCAGLGEAEAFAIRIEEERSRLPMEVNGIVFKFNDSRAREMAGHT
ARAPRGAIAYKFAAQSRVTRLNDVVMQVSREGLITPVAILEPVRIGGALM
SRAALHNFDEVKRLGVAVGDMVRIERGGDVIPKVIHVDKRLGDPSRLEVV
APSRCPSPDAMDIRGLGKKTAEKLVESEVVVFLADLFSLTLDDLLNLEGF
ALKSASQLYENIQEAASSRSFERLILGLGFPGVGRTGARALARKIGSLSN
LIETARSEDATEKLLDRLKLLPRERLKVF*
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spliced messenger RNA

>Gvermi7924.t1 ID=Gvermi7924.t1|Name=Gvermi7924.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=840bp|location=Sequence derived from alignment at ScGOVlb_24226:9059..10020+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAGACACCAAACTTGTGCCGGGTTAGGTGAGGCAGAAGCGTTTGC
GATTCGAATCGAAGAAGAACGATCTCGGTTACCAATGGAAGTCAACGGCA
TCGTTTTCAAGTTCAACGACTCACGAGCACGTGAGATGGCTGGTCATACC
GCTCGGGCACCTAGAGGTGCAATTGCGTATAAGTTCGCTGCCCAGTCCAG
AGTCACAAGACTTAATGACGTGGTGATGCAGGTTTCGCGCGAGGGACTCA
TAACTCCGGTCGCCATTCTTGAACCTGTTAGAATTGGAGGTGCGTTAATG
TCCAGGGCGGCCCTTCATAACTTTGATGAAGTGAAGAGGTTGGGCGTAGC
AGTCGGTGATATGGTTCGAATAGAAAGAGGTGGGGATGTCATCCCAAAAG
TGATTCATGTTGACAAGCGTCTTGGTGATCCTAGCCGCCTGGAAGTCGTA
GCCCCTTCTCGATGCCCGTCTCCAGATGCGATGGATATTAGAGGCCTTGG
CAAGAAGACCGCCGAAAAGCTGGTAGAGTCTGAAGTAGTCGTCTTCTTAG
CAGACTTGTTCAGTTTGACCCTCGATGATCTTCTTAACCTTGAAGGTTTT
GCGTTGAAGAGCGCATCGCAGTTGTACGAAAATATCCAAGAGGCGGCATC
GTCTAGAAGCTTTGAAAGACTTATTCTTGGCCTGGGTTTCCCTGGTGTAG
GCCGCACAGGTGCAAGGGCTCTCGCGCGGAAGATAGGGTCTCTTTCGAAT
CTGATCGAAACAGCTCGAAGCGAGGACGCCACGGAAAAGCTTTTGGACCG
TCTCAAACTTTTGCCGAGAGAACGGTTGAAGGTCTTCTAG
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protein sequence of Gvermi7924.t1

>Gvermi7924.t1 ID=Gvermi7924.t1|Name=Gvermi7924.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=280bp
MPRHQTCAGLGEAEAFAIRIEEERSRLPMEVNGIVFKFNDSRAREMAGHT
ARAPRGAIAYKFAAQSRVTRLNDVVMQVSREGLITPVAILEPVRIGGALM
SRAALHNFDEVKRLGVAVGDMVRIERGGDVIPKVIHVDKRLGDPSRLEVV
APSRCPSPDAMDIRGLGKKTAEKLVESEVVVFLADLFSLTLDDLLNLEGF
ALKSASQLYENIQEAASSRSFERLILGLGFPGVGRTGARALARKIGSLSN
LIETARSEDATEKLLDRLKLLPRERLKVF*
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mRNA from alignment at ScGOVlb_24226:9059..10020+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7924.t1 ID=Gvermi7924.t1|Name=Gvermi7924.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=962bp|location=Sequence derived from alignment at ScGOVlb_24226:9059..10020+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTAGACACCAAACTTGTGCCGGGTTAGGTGAGGCAGAAGCGTTTGC
GATTCGAATCGAAGAAGAACGATCTCGGTTACCAATGGAAGTCAACGGCA
TCGTTTTCAAGTTCAACGACTCACGAGCACGTGAGATGGCTGGTCATACC
GCTCGGGCACCTAGAGGTGCAATTGCGTATAAGTTCGCTGCCCAGTCCAG
AGTCACAAGACTTAATGACGTGGTGATGCAGGTTTCGCGCGAGGGACTCA
TAACTCCGGTCGCCATTCTTGAACCTGTTAGAATTGGAGGTGCGTTAATG
TCCAGGGCGGCCCTTCATAACTTTGATGAAGTGAAGAGGTTGGGCGTAGC
AGTCGGTGATATGGTTCGAATAGAAAGAGGTGGGGATGTCATCCCAAAAG
TGATTCATGTTGACAAGCGTCTTGGTGATCCTAGCCGCCTGGAAGTCGTA
GCCCCTTCTCGATGCCCGTCGTGTGGCGCAGAACTTAAGCATGCTCGAGC
GCCGAGGACGGGGGGGGGGCTATGCTCATTGGATGCACGAATGATAGCAG
TTGTACAACACAAACACTGGGAAGGGTGATGTATTTCTGCAGTCCAGATG
CGATGGATATTAGAGGCCTTGGCAAGAAGACCGCCGAAAAGCTGGTAGAG
TCTGAAGTAGTCGTCTTCTTAGCAGACTTGTTCAGTTTGACCCTCGATGA
TCTTCTTAACCTTGAAGGTTTTGCGTTGAAGAGCGCATCGCAGTTGTACG
AAAATATCCAAGAGGCGGCATCGTCTAGAAGCTTTGAAAGACTTATTCTT
GGCCTGGGTTTCCCTGGTGTAGGCCGCACAGGTGCAAGGGCTCTCGCGCG
GAAGATAGGGTCTCTTTCGAATCTGATCGAAACAGCTCGAAGCGAGGACG
CCACGGAAAAGCTTTTGGACCGTCTCAAACTTTTGCCGAGAGAACGGTTG
AAGGTCTTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:9059..10020+

>Gvermi7924.t1 ID=Gvermi7924.t1|Name=Gvermi7924.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=840bp|location=Sequence derived from alignment at ScGOVlb_24226:9059..10020+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTAGACACCAAACTTGTGCCGGGTTAGGTGAGGCAGAAGCGTTTGC
GATTCGAATCGAAGAAGAACGATCTCGGTTACCAATGGAAGTCAACGGCA
TCGTTTTCAAGTTCAACGACTCACGAGCACGTGAGATGGCTGGTCATACC
GCTCGGGCACCTAGAGGTGCAATTGCGTATAAGTTCGCTGCCCAGTCCAG
AGTCACAAGACTTAATGACGTGGTGATGCAGGTTTCGCGCGAGGGACTCA
TAACTCCGGTCGCCATTCTTGAACCTGTTAGAATTGGAGGTGCGTTAATG
TCCAGGGCGGCCCTTCATAACTTTGATGAAGTGAAGAGGTTGGGCGTAGC
AGTCGGTGATATGGTTCGAATAGAAAGAGGTGGGGATGTCATCCCAAAAG
TGATTCATGTTGACAAGCGTCTTGGTGATCCTAGCCGCCTGGAAGTCGTA
GCCCCTTCTCGATGCCCGTCTCCAGATGCGATGGATATTAGAGGCCTTGG
CAAGAAGACCGCCGAAAAGCTGGTAGAGTCTGAAGTAGTCGTCTTCTTAG
CAGACTTGTTCAGTTTGACCCTCGATGATCTTCTTAACCTTGAAGGTTTT
GCGTTGAAGAGCGCATCGCAGTTGTACGAAAATATCCAAGAGGCGGCATC
GTCTAGAAGCTTTGAAAGACTTATTCTTGGCCTGGGTTTCCCTGGTGTAG
GCCGCACAGGTGCAAGGGCTCTCGCGCGGAAGATAGGGTCTCTTTCGAAT
CTGATCGAAACAGCTCGAAGCGAGGACGCCACGGAAAAGCTTTTGGACCG
TCTCAAACTTTTGCCGAGAGAACGGTTGAAGGTCTTCTAG
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