Gvermi792.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi792.t1
Unique NameGvermi792.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:294286..294768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1283283.ATXA01000062_gene2402
PFAMsHSP20
Max annot lvl201174|Actinobacteria
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Evalue3.42e-07
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,2IIZ5@201174|Actinobacteria,4EX7X@85013|Frankiales
DescriptionHsp20/alpha crystallin family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi792Gvermi792Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 294286..294768 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi792.t1.start1Gvermi792.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 294286..294288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi792.t1.CDS1Gvermi792.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 294286..294768 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi792.t1.exon1Gvermi792.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 294286..294768 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi792.t1.stop1Gvermi792.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 294766..294768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi792.t1Gvermi792.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 294286..294768 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi792.t1 ID=Gvermi792.t1|Name=Gvermi792.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=161bp
MFPNIIQSIAAPLPFLLGQSNAPHQAHSHFHPFRFGHSRRHPLENTQSRD
PQVVEPTYYVESDDVQGFLYVELPGVRKRDIHIELHGHHLSISAKRFARA
IGSVTEEKEPKLLVQYALQLGLSHDTDISKVAVDEYSNGVLAINIPVVHK
KTGRKINIDV*
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spliced messenger RNA

>Gvermi792.t1 ID=Gvermi792.t1|Name=Gvermi792.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=483bp|location=Sequence derived from alignment at ScGOVlb_2952:294286..294768+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCCAAATATCATTCAATCCATCGCAGCACCGCTTCCTTTCCTCTT
AGGACAGTCAAATGCACCCCATCAAGCCCATTCTCACTTTCATCCGTTCC
GCTTCGGTCATAGCAGACGCCACCCGTTAGAAAACACCCAAAGTCGCGAC
CCCCAGGTTGTAGAACCTACGTACTACGTCGAATCAGATGACGTGCAGGG
TTTCCTTTACGTTGAACTTCCTGGGGTGCGGAAGAGAGATATTCACATTG
AGTTGCACGGCCACCACTTAAGTATTTCTGCTAAAAGATTCGCCAGAGCC
ATAGGCAGCGTCACTGAAGAGAAGGAGCCCAAACTGTTGGTTCAGTACGC
TTTGCAGCTTGGTCTTAGCCATGATACTGATATCTCCAAGGTTGCCGTGG
ATGAGTATAGTAATGGTGTGTTAGCCATCAACATTCCCGTTGTGCATAAG
AAGACTGGCAGGAAGATAAACATTGATGTGTGA
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protein sequence of Gvermi792.t1

>Gvermi792.t1 ID=Gvermi792.t1|Name=Gvermi792.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=161bp
MFPNIIQSIAAPLPFLLGQSNAPHQAHSHFHPFRFGHSRRHPLENTQSRD
PQVVEPTYYVESDDVQGFLYVELPGVRKRDIHIELHGHHLSISAKRFARA
IGSVTEEKEPKLLVQYALQLGLSHDTDISKVAVDEYSNGVLAINIPVVHK
KTGRKINIDV*
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mRNA from alignment at ScGOVlb_2952:294286..294768+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi792.t1 ID=Gvermi792.t1|Name=Gvermi792.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=483bp|location=Sequence derived from alignment at ScGOVlb_2952:294286..294768+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCCAAATATCATTCAATCCATCGCAGCACCGCTTCCTTTCCTCTT
AGGACAGTCAAATGCACCCCATCAAGCCCATTCTCACTTTCATCCGTTCC
GCTTCGGTCATAGCAGACGCCACCCGTTAGAAAACACCCAAAGTCGCGAC
CCCCAGGTTGTAGAACCTACGTACTACGTCGAATCAGATGACGTGCAGGG
TTTCCTTTACGTTGAACTTCCTGGGGTGCGGAAGAGAGATATTCACATTG
AGTTGCACGGCCACCACTTAAGTATTTCTGCTAAAAGATTCGCCAGAGCC
ATAGGCAGCGTCACTGAAGAGAAGGAGCCCAAACTGTTGGTTCAGTACGC
TTTGCAGCTTGGTCTTAGCCATGATACTGATATCTCCAAGGTTGCCGTGG
ATGAGTATAGTAATGGTGTGTTAGCCATCAACATTCCCGTTGTGCATAAG
AAGACTGGCAGGAAGATAAACATTGATGTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:294286..294768+

>Gvermi792.t1 ID=Gvermi792.t1|Name=Gvermi792.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=483bp|location=Sequence derived from alignment at ScGOVlb_2952:294286..294768+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCCAAATATCATTCAATCCATCGCAGCACCGCTTCCTTTCCTCTT
AGGACAGTCAAATGCACCCCATCAAGCCCATTCTCACTTTCATCCGTTCC
GCTTCGGTCATAGCAGACGCCACCCGTTAGAAAACACCCAAAGTCGCGAC
CCCCAGGTTGTAGAACCTACGTACTACGTCGAATCAGATGACGTGCAGGG
TTTCCTTTACGTTGAACTTCCTGGGGTGCGGAAGAGAGATATTCACATTG
AGTTGCACGGCCACCACTTAAGTATTTCTGCTAAAAGATTCGCCAGAGCC
ATAGGCAGCGTCACTGAAGAGAAGGAGCCCAAACTGTTGGTTCAGTACGC
TTTGCAGCTTGGTCTTAGCCATGATACTGATATCTCCAAGGTTGCCGTGG
ATGAGTATAGTAATGGTGTGTTAGCCATCAACATTCCCGTTGTGCATAAG
AAGACTGGCAGGAAGATAAACATTGATGTGTGA
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