Gvermi791.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi791.t1
Unique NameGvermi791.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:292209..292649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog351627.Csac_2056
PFAMsHSP20
Max annot lvl186801|Clostridia
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Evalue1.54e-09
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,1VG0E@1239|Firmicutes,24MRZ@186801|Clostridia,42JC6@68295|Thermoanaerobacterales
DescriptionBelongs to the small heat shock protein (HSP20) family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi791Gvermi791Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 292209..292649 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi791.t1.start1Gvermi791.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 292209..292211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi791.t1.CDS1Gvermi791.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 292209..292649 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi791.t1.exon1Gvermi791.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 292209..292649 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi791.t1.stop1Gvermi791.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 292647..292649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi791.t1Gvermi791.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 292209..292649 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi791.t1 ID=Gvermi791.t1|Name=Gvermi791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=147bp
MGVSRRCDYYGWPFCNDVALLRSLFWVPPLFAPFASHSGFLSPGYTFKRK
DGKAFIEIELPGVEKEDIRVETHGHTLVVKAKRFSHDVKEKAKVEPKATY
RFKARLSENVDVDGIKASFPGLGVLRLFVPYKPKEAEKVRNVPVDS*
back to top

spliced messenger RNA

>Gvermi791.t1 ID=Gvermi791.t1|Name=Gvermi791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=441bp|location=Sequence derived from alignment at ScGOVlb_2952:292209..292649+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGTGTCAAGAAGATGTGATTACTATGGATGGCCTTTCTGTAATGA
TGTTGCACTTCTTCGATCTCTGTTTTGGGTGCCTCCTCTGTTCGCTCCGT
TTGCCTCTCACAGCGGGTTTCTTTCTCCAGGGTACACATTTAAGAGAAAG
GACGGAAAAGCTTTCATTGAAATAGAGCTGCCAGGTGTTGAAAAGGAGGA
TATCCGTGTTGAAACGCATGGGCATACCTTGGTAGTCAAGGCGAAACGCT
TTTCACATGACGTTAAAGAAAAGGCAAAGGTGGAACCGAAAGCTACCTAT
AGATTCAAAGCTCGTCTCAGCGAAAACGTGGACGTGGATGGTATAAAAGC
GTCTTTTCCAGGTCTTGGTGTTCTTCGACTATTTGTTCCCTACAAGCCTA
AAGAAGCTGAGAAGGTTAGAAATGTGCCTGTTGATTCCTAA
back to top

protein sequence of Gvermi791.t1

>Gvermi791.t1 ID=Gvermi791.t1|Name=Gvermi791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=147bp
MGVSRRCDYYGWPFCNDVALLRSLFWVPPLFAPFASHSGFLSPGYTFKRK
DGKAFIEIELPGVEKEDIRVETHGHTLVVKAKRFSHDVKEKAKVEPKATY
RFKARLSENVDVDGIKASFPGLGVLRLFVPYKPKEAEKVRNVPVDS*
back to top

mRNA from alignment at ScGOVlb_2952:292209..292649+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi791.t1 ID=Gvermi791.t1|Name=Gvermi791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=441bp|location=Sequence derived from alignment at ScGOVlb_2952:292209..292649+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGTGTCAAGAAGATGTGATTACTATGGATGGCCTTTCTGTAATGA
TGTTGCACTTCTTCGATCTCTGTTTTGGGTGCCTCCTCTGTTCGCTCCGT
TTGCCTCTCACAGCGGGTTTCTTTCTCCAGGGTACACATTTAAGAGAAAG
GACGGAAAAGCTTTCATTGAAATAGAGCTGCCAGGTGTTGAAAAGGAGGA
TATCCGTGTTGAAACGCATGGGCATACCTTGGTAGTCAAGGCGAAACGCT
TTTCACATGACGTTAAAGAAAAGGCAAAGGTGGAACCGAAAGCTACCTAT
AGATTCAAAGCTCGTCTCAGCGAAAACGTGGACGTGGATGGTATAAAAGC
GTCTTTTCCAGGTCTTGGTGTTCTTCGACTATTTGTTCCCTACAAGCCTA
AAGAAGCTGAGAAGGTTAGAAATGTGCCTGTTGATTCCTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_2952:292209..292649+

>Gvermi791.t1 ID=Gvermi791.t1|Name=Gvermi791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=441bp|location=Sequence derived from alignment at ScGOVlb_2952:292209..292649+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGTGTCAAGAAGATGTGATTACTATGGATGGCCTTTCTGTAATGA
TGTTGCACTTCTTCGATCTCTGTTTTGGGTGCCTCCTCTGTTCGCTCCGT
TTGCCTCTCACAGCGGGTTTCTTTCTCCAGGGTACACATTTAAGAGAAAG
GACGGAAAAGCTTTCATTGAAATAGAGCTGCCAGGTGTTGAAAAGGAGGA
TATCCGTGTTGAAACGCATGGGCATACCTTGGTAGTCAAGGCGAAACGCT
TTTCACATGACGTTAAAGAAAAGGCAAAGGTGGAACCGAAAGCTACCTAT
AGATTCAAAGCTCGTCTCAGCGAAAACGTGGACGTGGATGGTATAAAAGC
GTCTTTTCCAGGTCTTGGTGTTCTTCGACTATTTGTTCCCTACAAGCCTA
AAGAAGCTGAGAAGGTTAGAAATGTGCCTGTTGATTCCTAA
back to top