Gvermi785.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi785.t1
Unique NameGvermi785.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:251241..252044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi785Gvermi785Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 251241..252044 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi785.t1.start1Gvermi785.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 251241..251243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi785.t1.CDS1Gvermi785.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 251241..252044 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi785.t1.exon1Gvermi785.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 251241..252044 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi785.t1.stop1Gvermi785.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 252042..252044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi785.t1Gvermi785.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 251241..252044 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi785.t1 ID=Gvermi785.t1|Name=Gvermi785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=268bp
MCARRAPLLSSPPSLTLHPALLASFASFVAAITIVGALLLTQFYPGRFRI
HPYPYLSDAGLRDPERIVLTIGLCLSANLLLPLIGAVYLHFSETAPPAFV
PTFPSRLPTPHTVTQLNLRSGLALALFLTLFSSVPGYWFLHHVLAALFAL
SAATWSLTTALLIHAVYRRPPHLAYVCSAIQVAVIALFSCLWISLRLRFP
FALIPNKDPRFVYMAVLEYVGTTAFLLSARLATRCARPFHLSLQLHRNRT
AHEDSRTRPKSVSVIRP*
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spliced messenger RNA

>Gvermi785.t1 ID=Gvermi785.t1|Name=Gvermi785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=804bp|location=Sequence derived from alignment at ScGOVlb_2952:251241..252044+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGCGCGACGCGCCCCCCTCCTCTCGTCGCCGCCTTCGCTCACGTT
GCACCCCGCCCTTCTCGCCTCATTTGCCTCATTCGTTGCCGCCATCACCA
TCGTGGGCGCCCTTCTTTTGACTCAGTTCTACCCCGGGCGCTTTCGAATT
CACCCCTATCCGTATCTCAGCGACGCCGGCCTTCGCGATCCCGAGCGCAT
TGTGCTCACCATCGGCTTGTGTCTTTCTGCCAACCTGTTGCTGCCTTTAA
TCGGAGCCGTTTATCTGCACTTCTCTGAGACCGCGCCGCCCGCTTTCGTG
CCAACTTTCCCTTCCCGCCTCCCCACACCACACACGGTCACGCAACTCAA
CCTCCGCAGCGGCCTCGCACTTGCGCTCTTTCTCACGCTTTTTTCTTCCG
TGCCGGGTTACTGGTTCCTCCATCACGTTTTGGCCGCGCTCTTCGCGCTG
AGCGCCGCAACGTGGAGCCTCACGACTGCTCTGCTCATTCACGCAGTGTA
CAGAAGGCCACCGCACCTTGCCTATGTGTGCTCGGCCATTCAGGTCGCAG
TAATCGCGCTGTTCAGCTGTCTGTGGATTTCGCTTCGATTGCGCTTCCCC
TTTGCGCTGATCCCCAACAAAGACCCGCGCTTCGTGTACATGGCGGTGCT
GGAATACGTTGGCACCACCGCCTTCCTGCTCAGCGCGCGGCTCGCCACCC
GTTGCGCGCGCCCGTTCCACCTCTCGCTGCAACTTCACCGCAATCGCACA
GCACATGAAGACTCGCGCACGCGCCCCAAGTCCGTCTCCGTAATCCGCCC
CTAA
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protein sequence of Gvermi785.t1

>Gvermi785.t1 ID=Gvermi785.t1|Name=Gvermi785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=268bp
MCARRAPLLSSPPSLTLHPALLASFASFVAAITIVGALLLTQFYPGRFRI
HPYPYLSDAGLRDPERIVLTIGLCLSANLLLPLIGAVYLHFSETAPPAFV
PTFPSRLPTPHTVTQLNLRSGLALALFLTLFSSVPGYWFLHHVLAALFAL
SAATWSLTTALLIHAVYRRPPHLAYVCSAIQVAVIALFSCLWISLRLRFP
FALIPNKDPRFVYMAVLEYVGTTAFLLSARLATRCARPFHLSLQLHRNRT
AHEDSRTRPKSVSVIRP*
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mRNA from alignment at ScGOVlb_2952:251241..252044+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi785.t1 ID=Gvermi785.t1|Name=Gvermi785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=804bp|location=Sequence derived from alignment at ScGOVlb_2952:251241..252044+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTGCGCGACGCGCCCCCCTCCTCTCGTCGCCGCCTTCGCTCACGTT
GCACCCCGCCCTTCTCGCCTCATTTGCCTCATTCGTTGCCGCCATCACCA
TCGTGGGCGCCCTTCTTTTGACTCAGTTCTACCCCGGGCGCTTTCGAATT
CACCCCTATCCGTATCTCAGCGACGCCGGCCTTCGCGATCCCGAGCGCAT
TGTGCTCACCATCGGCTTGTGTCTTTCTGCCAACCTGTTGCTGCCTTTAA
TCGGAGCCGTTTATCTGCACTTCTCTGAGACCGCGCCGCCCGCTTTCGTG
CCAACTTTCCCTTCCCGCCTCCCCACACCACACACGGTCACGCAACTCAA
CCTCCGCAGCGGCCTCGCACTTGCGCTCTTTCTCACGCTTTTTTCTTCCG
TGCCGGGTTACTGGTTCCTCCATCACGTTTTGGCCGCGCTCTTCGCGCTG
AGCGCCGCAACGTGGAGCCTCACGACTGCTCTGCTCATTCACGCAGTGTA
CAGAAGGCCACCGCACCTTGCCTATGTGTGCTCGGCCATTCAGGTCGCAG
TAATCGCGCTGTTCAGCTGTCTGTGGATTTCGCTTCGATTGCGCTTCCCC
TTTGCGCTGATCCCCAACAAAGACCCGCGCTTCGTGTACATGGCGGTGCT
GGAATACGTTGGCACCACCGCCTTCCTGCTCAGCGCGCGGCTCGCCACCC
GTTGCGCGCGCCCGTTCCACCTCTCGCTGCAACTTCACCGCAATCGCACA
GCACATGAAGACTCGCGCACGCGCCCCAAGTCCGTCTCCGTAATCCGCCC
CTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:251241..252044+

>Gvermi785.t1 ID=Gvermi785.t1|Name=Gvermi785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=804bp|location=Sequence derived from alignment at ScGOVlb_2952:251241..252044+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTGCGCGACGCGCCCCCCTCCTCTCGTCGCCGCCTTCGCTCACGTT
GCACCCCGCCCTTCTCGCCTCATTTGCCTCATTCGTTGCCGCCATCACCA
TCGTGGGCGCCCTTCTTTTGACTCAGTTCTACCCCGGGCGCTTTCGAATT
CACCCCTATCCGTATCTCAGCGACGCCGGCCTTCGCGATCCCGAGCGCAT
TGTGCTCACCATCGGCTTGTGTCTTTCTGCCAACCTGTTGCTGCCTTTAA
TCGGAGCCGTTTATCTGCACTTCTCTGAGACCGCGCCGCCCGCTTTCGTG
CCAACTTTCCCTTCCCGCCTCCCCACACCACACACGGTCACGCAACTCAA
CCTCCGCAGCGGCCTCGCACTTGCGCTCTTTCTCACGCTTTTTTCTTCCG
TGCCGGGTTACTGGTTCCTCCATCACGTTTTGGCCGCGCTCTTCGCGCTG
AGCGCCGCAACGTGGAGCCTCACGACTGCTCTGCTCATTCACGCAGTGTA
CAGAAGGCCACCGCACCTTGCCTATGTGTGCTCGGCCATTCAGGTCGCAG
TAATCGCGCTGTTCAGCTGTCTGTGGATTTCGCTTCGATTGCGCTTCCCC
TTTGCGCTGATCCCCAACAAAGACCCGCGCTTCGTGTACATGGCGGTGCT
GGAATACGTTGGCACCACCGCCTTCCTGCTCAGCGCGCGGCTCGCCACCC
GTTGCGCGCGCCCGTTCCACCTCTCGCTGCAACTTCACCGCAATCGCACA
GCACATGAAGACTCGCGCACGCGCCCCAAGTCCGTCTCCGTAATCCGCCC
CTAA
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