Gvermi781.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi781.t1
Unique NameGvermi781.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length486
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:238805..240622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5217.XP_007006747.1
Preferred nameTUP1
PFAMsTup_N,WD40
Max annot lvl4751|Fungi
KEGG koko:K06666
KEGG Pathwayko04011,ko04111,map04011,map04111
GOsGO:0000003,GO:0000122,GO:0000228,GO:0000429,GO:0000430,GO:0000433,GO:0000785,GO:0000790,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001196,GO:0001198,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006355,GO:0006357,GO:0006950,GO:0006970,GO:0006996,GO:0007154,GO:0007155,GO:0007530,GO:0007531,GO:0007532,GO:0007584,GO:0008150,GO:0008289,GO:0009267,GO:0009372,GO:0009405,GO:0009605,GO:0009607,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016458,GO:0016584,GO:0017053,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019747,GO:0019899,GO:0022414,GO:0022607,GO:0022610,GO:0030154,GO:0030447,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032502,GO:0032879,GO:0032991,GO:0033554,GO:0033993,GO:0034728,GO:0035091,GO:0035690,GO:0035950,GO:0035952,GO:0035953,GO:0035955,GO:0036033,GO:0036166,GO:0036170,GO:0036171,GO:0036180,GO:0040007,GO:0040008,GO:0040029,GO:0042221,GO:0042304,GO:0042393,GO:0042493,GO:0042594,GO:0042826,GO:0043044,GO:0043156,GO:0043157,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0044877,GO:0045013,GO:0045014,GO:0045165,GO:0045814,GO:0045827,GO:0045833,GO:0045892,GO:0045893,GO:0045894,GO:0045926,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046677,GO:0046688,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051828,GO:0051832,GO:0051834,GO:0052173,GO:0060255,GO:0060258,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0062012,GO:0065007,GO:0070013,GO:0070784,GO:0070887,GO:0071103,GO:0071214,GO:0071236,GO:0071241,GO:0071248,GO:0071280,GO:0071310,GO:0071396,GO:0071470,GO:0071472,GO:0071473,GO:0071496,GO:0071824,GO:0071840,GO:0072364,GO:0080025,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090088,GO:0090089,GO:0090568,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:0098609,GO:0104004,GO:0140110,GO:1900428,GO:1900429,GO:1901700,GO:1901701,GO:1901981,GO:1902679,GO:1902680,GO:1902936,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2000217,GO:2000531,GO:2000877,GO:2000879,GO:2001020,GO:2001141
Evalue3.77e-33
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota,38E6T@33154|Opisthokonta,3NUUI@4751|Fungi,3UYSJ@5204|Basidiomycota,3VDMM@5234|Tremellales
DescriptionTup N-terminal
COG categoryS
BRITEko00000,ko00001,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi781Gvermi781Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 238805..240622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi781.t1Gvermi781.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 238805..240622 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi781.t1.stop1Gvermi781.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 238805..238807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi781.t1.CDS1Gvermi781.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 238805..240038 -
Gvermi781.t1.CDS2Gvermi781.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 240399..240622 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi781.t1.exon1Gvermi781.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 238805..240038 -
Gvermi781.t1.exon2Gvermi781.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 240399..240622 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi781.t1.intron1Gvermi781.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 240039..240398 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi781.t1.start1Gvermi781.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 240620..240622 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi781.t1 ID=Gvermi781.t1|Name=Gvermi781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=486bp
MTSPSRFAELINLLKEEYDRVSSENASFKSFRTDWSRKVDEQASELDAML
TEFHDLERKHQLVKEQYEAEIRRLKANIAPPSMMQSKVPSMSIVHHPGAR
EPTLTHSIKKDVPMSLQQSINAPSMLVSSSASPFVTPQQQLRPPVISAAS
NPPPSQIEDDWLVYQGRAPSGPRTTMKVQLQHTIPLESVVCCVRYSWDSR
YLATGSNHCAHIFDTATGQNVGTFAKDENTPVATSGPDRYVRAVCFSPDG
NLLITGAEDHIVTVWDIRNRKVKHKLVGHGTDIYSVDASANSRFIVSGSG
DKRAKMWDLESGKLLSTLGGEYGPTDGITSVAVAPSSQHVAAGSLDKVVR
LWDAESSRLLRQFEGHSDSVYSVAFSPDGRLLLSGSLDRTLRLWDLSMPQ
SPTACRMSYSGHRDFVLSVTFSPNGQWLISGSKDRTVQFWDPRQPNMCLM
LQGHKNSVISIGHDPNGTALATGSGDSRCRTWLYS*
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spliced messenger RNA

>Gvermi781.t1 ID=Gvermi781.t1|Name=Gvermi781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at ScGOVlb_2952:238805..240622- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCCCCGTCGCGCTTCGCGGAGCTCATCAACCTTCTCAAGGAGGA
GTACGATCGTGTCTCCTCGGAGAATGCCAGCTTCAAGTCCTTCCGCACCG
ACTGGAGCCGCAAGGTTGACGAGCAGGCCTCCGAGCTCGACGCCATGCTC
ACCGAGTTTCACGACCTCGAACGCAAGCACCAGCTCGTCAAGGAGCAGTA
CGAAGCCGAGATCCGCCGCCTCAAGGCCAACATCGCCCCTCCCTCCATGA
TGCAATCCAAAGTTCCTTCCATGAGCATAGTGCATCATCCGGGAGCCCGA
GAGCCCACACTTACCCATTCCATCAAGAAGGATGTGCCCATGTCGTTGCA
ACAGAGCATCAATGCCCCCTCCATGCTTGTGTCTTCTTCGGCCTCCCCGT
TTGTCACGCCGCAGCAGCAGCTCCGACCCCCCGTCATTTCCGCTGCCTCC
AACCCTCCGCCATCGCAAATTGAAGATGACTGGCTCGTCTATCAAGGGCG
TGCCCCATCTGGCCCGCGAACAACCATGAAAGTTCAGCTGCAGCACACCA
TCCCGCTCGAATCCGTCGTGTGTTGTGTCCGGTACAGCTGGGACAGCCGC
TACCTTGCCACTGGCTCAAATCATTGCGCCCATATCTTTGACACCGCTAC
TGGACAGAATGTCGGCACGTTTGCCAAGGATGAAAACACTCCGGTGGCCA
CGTCGGGACCGGATCGCTATGTCCGAGCTGTGTGTTTTTCACCGGATGGC
AATTTGCTCATCACTGGTGCGGAAGATCACATTGTCACTGTTTGGGACAT
CCGAAATCGAAAAGTGAAGCACAAATTAGTTGGACACGGAACAGACATAT
ATTCGGTTGATGCTAGCGCCAATAGTCGCTTTATCGTTTCCGGATCCGGC
GACAAACGAGCTAAGATGTGGGACCTTGAATCTGGCAAACTGCTCAGCAC
GCTGGGCGGCGAATATGGACCGACGGACGGTATCACCTCCGTAGCTGTTG
CCCCCTCAAGTCAACACGTCGCTGCCGGTTCGTTGGATAAGGTTGTTCGC
TTATGGGATGCAGAATCCAGTCGACTGCTACGTCAGTTTGAGGGGCACAG
CGATTCTGTGTACTCTGTGGCATTTTCACCGGACGGAAGGTTGTTGCTAT
CGGGATCACTTGACCGCACCCTCAGGCTGTGGGACCTTTCCATGCCGCAG
AGCCCTACTGCTTGTAGGATGTCCTACTCGGGGCACAGGGACTTTGTACT
ATCTGTGACGTTTAGTCCTAATGGACAGTGGCTGATCTCAGGTTCGAAAG
ATCGCACTGTTCAGTTTTGGGATCCGCGCCAGCCCAATATGTGTCTTATG
TTGCAAGGACATAAGAACTCGGTGATAAGCATCGGACATGACCCCAATGG
TACGGCTCTGGCTACTGGGTCTGGTGATAGCCGATGTCGGACGTGGTTGT
ATTCATGA
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protein sequence of Gvermi781.t1

>Gvermi781.t1 ID=Gvermi781.t1|Name=Gvermi781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=486bp
MTSPSRFAELINLLKEEYDRVSSENASFKSFRTDWSRKVDEQASELDAML
TEFHDLERKHQLVKEQYEAEIRRLKANIAPPSMMQSKVPSMSIVHHPGAR
EPTLTHSIKKDVPMSLQQSINAPSMLVSSSASPFVTPQQQLRPPVISAAS
NPPPSQIEDDWLVYQGRAPSGPRTTMKVQLQHTIPLESVVCCVRYSWDSR
YLATGSNHCAHIFDTATGQNVGTFAKDENTPVATSGPDRYVRAVCFSPDG
NLLITGAEDHIVTVWDIRNRKVKHKLVGHGTDIYSVDASANSRFIVSGSG
DKRAKMWDLESGKLLSTLGGEYGPTDGITSVAVAPSSQHVAAGSLDKVVR
LWDAESSRLLRQFEGHSDSVYSVAFSPDGRLLLSGSLDRTLRLWDLSMPQ
SPTACRMSYSGHRDFVLSVTFSPNGQWLISGSKDRTVQFWDPRQPNMCLM
LQGHKNSVISIGHDPNGTALATGSGDSRCRTWLYS*
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mRNA from alignment at ScGOVlb_2952:238805..240622-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi781.t1 ID=Gvermi781.t1|Name=Gvermi781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1818bp|location=Sequence derived from alignment at ScGOVlb_2952:238805..240622- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTCCCCGTCGCGCTTCGCGGAGCTCATCAACCTTCTCAAGGAGGA
GTACGATCGTGTCTCCTCGGAGAATGCCAGCTTCAAGTCCTTCCGCACCG
ACTGGAGCCGCAAGGTTGACGAGCAGGCCTCCGAGCTCGACGCCATGCTC
ACCGAGTTTCACGACCTCGAACGCAAGCACCAGCTCGTCAAGGAGCAGTA
CGAAGCCGAGATCCGCCGCCTCAAGTCCCAAGCCCAACAGCCTCCCCCGC
AACAGCACCCCCCCCAGCAGCACCCCCCGCCGCAGCCCCACCCGCAGTCT
CAGCCGCCCACCGCCGCCGCTGCTGCCGCCGCCGCCGCCGCCCAGAAGCG
CCAGCAGCCGTACCCACCCCTCCAATCCGAACAGCAAACCATCTCGCCCA
TGTTTGTGTCCAGGCCGCTCGCGCCCCCAGCGCCCGCCCCCGCCCCCGTC
CCCGCGCCGCAGCCCCCGTCCGCCTTACGCCCAATCATATCGGCCCGGCC
ACCCGCCCCTGGCGCCCCCCCCGGCGGCGCTAACCCGCCCCCAACTGCTA
TTCCATCCATCAACAACCCCTCCACGTTGACCAGGGCCAACATCGCCCCT
CCCTCCATGATGCAATCCAAAGTTCCTTCCATGAGCATAGTGCATCATCC
GGGAGCCCGAGAGCCCACACTTACCCATTCCATCAAGAAGGATGTGCCCA
TGTCGTTGCAACAGAGCATCAATGCCCCCTCCATGCTTGTGTCTTCTTCG
GCCTCCCCGTTTGTCACGCCGCAGCAGCAGCTCCGACCCCCCGTCATTTC
CGCTGCCTCCAACCCTCCGCCATCGCAAATTGAAGATGACTGGCTCGTCT
ATCAAGGGCGTGCCCCATCTGGCCCGCGAACAACCATGAAAGTTCAGCTG
CAGCACACCATCCCGCTCGAATCCGTCGTGTGTTGTGTCCGGTACAGCTG
GGACAGCCGCTACCTTGCCACTGGCTCAAATCATTGCGCCCATATCTTTG
ACACCGCTACTGGACAGAATGTCGGCACGTTTGCCAAGGATGAAAACACT
CCGGTGGCCACGTCGGGACCGGATCGCTATGTCCGAGCTGTGTGTTTTTC
ACCGGATGGCAATTTGCTCATCACTGGTGCGGAAGATCACATTGTCACTG
TTTGGGACATCCGAAATCGAAAAGTGAAGCACAAATTAGTTGGACACGGA
ACAGACATATATTCGGTTGATGCTAGCGCCAATAGTCGCTTTATCGTTTC
CGGATCCGGCGACAAACGAGCTAAGATGTGGGACCTTGAATCTGGCAAAC
TGCTCAGCACGCTGGGCGGCGAATATGGACCGACGGACGGTATCACCTCC
GTAGCTGTTGCCCCCTCAAGTCAACACGTCGCTGCCGGTTCGTTGGATAA
GGTTGTTCGCTTATGGGATGCAGAATCCAGTCGACTGCTACGTCAGTTTG
AGGGGCACAGCGATTCTGTGTACTCTGTGGCATTTTCACCGGACGGAAGG
TTGTTGCTATCGGGATCACTTGACCGCACCCTCAGGCTGTGGGACCTTTC
CATGCCGCAGAGCCCTACTGCTTGTAGGATGTCCTACTCGGGGCACAGGG
ACTTTGTACTATCTGTGACGTTTAGTCCTAATGGACAGTGGCTGATCTCA
GGTTCGAAAGATCGCACTGTTCAGTTTTGGGATCCGCGCCAGCCCAATAT
GTGTCTTATGTTGCAAGGACATAAGAACTCGGTGATAAGCATCGGACATG
ACCCCAATGGTACGGCTCTGGCTACTGGGTCTGGTGATAGCCGATGTCGG
ACGTGGTTGTATTCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:238805..240622-

>Gvermi781.t1 ID=Gvermi781.t1|Name=Gvermi781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1458bp|location=Sequence derived from alignment at ScGOVlb_2952:238805..240622- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTCCCCGTCGCGCTTCGCGGAGCTCATCAACCTTCTCAAGGAGGA
GTACGATCGTGTCTCCTCGGAGAATGCCAGCTTCAAGTCCTTCCGCACCG
ACTGGAGCCGCAAGGTTGACGAGCAGGCCTCCGAGCTCGACGCCATGCTC
ACCGAGTTTCACGACCTCGAACGCAAGCACCAGCTCGTCAAGGAGCAGTA
CGAAGCCGAGATCCGCCGCCTCAAGGCCAACATCGCCCCTCCCTCCATGA
TGCAATCCAAAGTTCCTTCCATGAGCATAGTGCATCATCCGGGAGCCCGA
GAGCCCACACTTACCCATTCCATCAAGAAGGATGTGCCCATGTCGTTGCA
ACAGAGCATCAATGCCCCCTCCATGCTTGTGTCTTCTTCGGCCTCCCCGT
TTGTCACGCCGCAGCAGCAGCTCCGACCCCCCGTCATTTCCGCTGCCTCC
AACCCTCCGCCATCGCAAATTGAAGATGACTGGCTCGTCTATCAAGGGCG
TGCCCCATCTGGCCCGCGAACAACCATGAAAGTTCAGCTGCAGCACACCA
TCCCGCTCGAATCCGTCGTGTGTTGTGTCCGGTACAGCTGGGACAGCCGC
TACCTTGCCACTGGCTCAAATCATTGCGCCCATATCTTTGACACCGCTAC
TGGACAGAATGTCGGCACGTTTGCCAAGGATGAAAACACTCCGGTGGCCA
CGTCGGGACCGGATCGCTATGTCCGAGCTGTGTGTTTTTCACCGGATGGC
AATTTGCTCATCACTGGTGCGGAAGATCACATTGTCACTGTTTGGGACAT
CCGAAATCGAAAAGTGAAGCACAAATTAGTTGGACACGGAACAGACATAT
ATTCGGTTGATGCTAGCGCCAATAGTCGCTTTATCGTTTCCGGATCCGGC
GACAAACGAGCTAAGATGTGGGACCTTGAATCTGGCAAACTGCTCAGCAC
GCTGGGCGGCGAATATGGACCGACGGACGGTATCACCTCCGTAGCTGTTG
CCCCCTCAAGTCAACACGTCGCTGCCGGTTCGTTGGATAAGGTTGTTCGC
TTATGGGATGCAGAATCCAGTCGACTGCTACGTCAGTTTGAGGGGCACAG
CGATTCTGTGTACTCTGTGGCATTTTCACCGGACGGAAGGTTGTTGCTAT
CGGGATCACTTGACCGCACCCTCAGGCTGTGGGACCTTTCCATGCCGCAG
AGCCCTACTGCTTGTAGGATGTCCTACTCGGGGCACAGGGACTTTGTACT
ATCTGTGACGTTTAGTCCTAATGGACAGTGGCTGATCTCAGGTTCGAAAG
ATCGCACTGTTCAGTTTTGGGATCCGCGCCAGCCCAATATGTGTCTTATG
TTGCAAGGACATAAGAACTCGGTGATAAGCATCGGACATGACCCCAATGG
TACGGCTCTGGCTACTGGGTCTGGTGATAGCCGATGTCGGACGTGGTTGT
ATTCATGA
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