Gvermi7798.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7798.t1
Unique NameGvermi7798.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length36
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_12491contigScGOVlb_12491:2..198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7798Gvermi7798Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_12491 2..198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7798.t1Gvermi7798.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_12491 2..198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7798.t1.CDS1Gvermi7798.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_12491 2..91 +
Gvermi7798.t1.CDS2Gvermi7798.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_12491 181..198 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7798.t1.exon1Gvermi7798.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_12491 2..91 +
Gvermi7798.t1.exon2Gvermi7798.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_12491 181..198 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7798.t1.intron1Gvermi7798.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_12491 92..180 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7798.t1.stop1Gvermi7798.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_12491 196..198 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7798.t1 ID=Gvermi7798.t1|Name=Gvermi7798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=36bp
TPHFMLHEGDACRILRRVLDLLRQIQHLPLKRRKR*
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spliced messenger RNA

>Gvermi7798.t1 ID=Gvermi7798.t1|Name=Gvermi7798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=108bp|location=Sequence derived from alignment at ScGOVlb_12491:2..198+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ACACCACACTTCATGCTTCATGAGGGTGACGCGTGCAGAATTTTGAGAAG
AGTTCTTGACCTTCTCCGACAAATTCAGCATCTTCCGCTGAAGAGAAGAA
AGAGATGA
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protein sequence of Gvermi7798.t1

>Gvermi7798.t1 ID=Gvermi7798.t1|Name=Gvermi7798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=36bp
TPHFMLHEGDACRILRRVLDLLRQIQHLPLKRRKR*
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mRNA from alignment at ScGOVlb_12491:2..198+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7798.t1 ID=Gvermi7798.t1|Name=Gvermi7798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=197bp|location=Sequence derived from alignment at ScGOVlb_12491:2..198+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ACACCACACTTCATGCTTCATGAGGGTGACGCGTGCAGAATTTTGAGAAG
AGTTCTTGACCTTCTCCGACAAATTCAGCATCTTCCGCTGGTGAGCGAAG
AACTCCGGCGCAATGCAAAGCGAACTATTGCTCTCCTCGACCGCTTCCCT
GTGACTGATGACAGGACTTACTTTGTTAGAAGAGAAGAAAGAGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_12491:2..198+

>Gvermi7798.t1 ID=Gvermi7798.t1|Name=Gvermi7798.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=108bp|location=Sequence derived from alignment at ScGOVlb_12491:2..198+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ACACCACACTTCATGCTTCATGAGGGTGACGCGTGCAGAATTTTGAGAAG
AGTTCTTGACCTTCTCCGACAAATTCAGCATCTTCCGCTGAAGAGAAGAA
AGAGATGA
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