Gvermi772.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi772.t1
Unique NameGvermi772.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2952contigScGOVlb_2952:57650..58440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi772Gvermi772Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2952 57650..58440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi772.t1Gvermi772.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2952 57650..58440 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi772.t1.stop1Gvermi772.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2952 57650..57652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi772.t1.CDS1Gvermi772.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 57650..57682 -
Gvermi772.t1.CDS2Gvermi772.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2952 57751..58440 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi772.t1.exon1Gvermi772.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 57650..57682 -
Gvermi772.t1.exon2Gvermi772.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2952 57751..58440 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi772.t1.intron1Gvermi772.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2952 57683..57750 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi772.t1.start1Gvermi772.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2952 58438..58440 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi772.t1 ID=Gvermi772.t1|Name=Gvermi772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=241bp
MVLVHLKSQFVSLFVTVLSGVAELLLFGALLGFNKYAECQALRRGKPVSV
RLHRARTKFLAIFAMVVFIVLEVIMSFFSDPDFSSIPDPRPCVSIRRFDL
FDTQVVGFLSDSVLINCIRTSETKSFQHVGNRSKADNTVTCADSPLYEFS
DESFVMQPLDLKYSKACDLLTSFETGREELVCVFGVAQGRDFRFSELILE
ALIEDRIAKKTEVQFLQTTTSFNISKGQEQSLHKFRKHQL*
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spliced messenger RNA

>Gvermi772.t1 ID=Gvermi772.t1|Name=Gvermi772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=723bp|location=Sequence derived from alignment at ScGOVlb_2952:57650..58440- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTCGTTCACCTCAAGTCGCAGTTCGTCAGTCTCTTCGTCACCGT
CCTGTCCGGTGTGGCCGAGCTGCTGCTGTTCGGCGCCCTTCTCGGATTCA
ACAAGTATGCCGAGTGTCAAGCGCTCAGGCGCGGCAAGCCGGTCAGCGTT
CGCCTTCACCGCGCGCGAACCAAGTTTCTAGCAATCTTCGCCATGGTCGT
CTTCATCGTTCTCGAGGTCATCATGTCTTTCTTCAGTGACCCGGATTTCA
GTTCCATACCAGATCCTCGCCCATGTGTTTCCATCAGACGGTTTGACCTT
TTCGACACCCAAGTCGTCGGTTTTTTATCAGATTCCGTCTTGATCAACTG
CATTCGTACATCAGAGACCAAGTCATTTCAACATGTAGGCAATCGAAGCA
AGGCAGACAACACCGTGACATGCGCCGACTCCCCATTGTATGAATTTTCG
GATGAAAGCTTTGTTATGCAGCCACTTGACCTAAAGTATTCCAAGGCCTG
CGACCTATTAACTTCATTTGAAACTGGGCGTGAAGAACTAGTTTGTGTGT
TTGGCGTAGCTCAGGGGCGAGATTTCCGTTTTTCCGAACTCATCTTGGAA
GCTCTTATTGAAGACAGAATTGCCAAGAAAACCGAAGTGCAATTTTTACA
GACCACAACGTCGTTTAACATCAGCAAAGGCCAGGAACAGAGTCTTCACA
AGTTCCGCAAACACCAGCTGTGA
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protein sequence of Gvermi772.t1

>Gvermi772.t1 ID=Gvermi772.t1|Name=Gvermi772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=241bp
MVLVHLKSQFVSLFVTVLSGVAELLLFGALLGFNKYAECQALRRGKPVSV
RLHRARTKFLAIFAMVVFIVLEVIMSFFSDPDFSSIPDPRPCVSIRRFDL
FDTQVVGFLSDSVLINCIRTSETKSFQHVGNRSKADNTVTCADSPLYEFS
DESFVMQPLDLKYSKACDLLTSFETGREELVCVFGVAQGRDFRFSELILE
ALIEDRIAKKTEVQFLQTTTSFNISKGQEQSLHKFRKHQL*
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mRNA from alignment at ScGOVlb_2952:57650..58440-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi772.t1 ID=Gvermi772.t1|Name=Gvermi772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=791bp|location=Sequence derived from alignment at ScGOVlb_2952:57650..58440- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCTCGTTCACCTCAAGTCGCAGTTCGTCAGTCTCTTCGTCACCGT
CCTGTCCGGTGTGGCCGAGCTGCTGCTGTTCGGCGCCCTTCTCGGATTCA
ACAAGTATGCCGAGTGTCAAGCGCTCAGGCGCGGCAAGCCGGTCAGCGTT
CGCCTTCACCGCGCGCGAACCAAGTTTCTAGCAATCTTCGCCATGGTCGT
CTTCATCGTTCTCGAGGTCATCATGTCTTTCTTCAGTGACCCGGATTTCA
GTTCCATACCAGATCCTCGCCCATGTGTTTCCATCAGACGGTTTGACCTT
TTCGACACCCAAGTCGTCGGTTTTTTATCAGATTCCGTCTTGATCAACTG
CATTCGTACATCAGAGACCAAGTCATTTCAACATGTAGGCAATCGAAGCA
AGGCAGACAACACCGTGACATGCGCCGACTCCCCATTGTATGAATTTTCG
GATGAAAGCTTTGTTATGCAGCCACTTGACCTAAAGTATTCCAAGGCCTG
CGACCTATTAACTTCATTTGAAACTGGGCGTGAAGAACTAGTTTGTGTGT
TTGGCGTAGCTCAGGGGCGAGATTTCCGTTTTTCCGAACTCATCTTGGAA
GCTCTTATTGAAGACAGAATTGCCAAGAAAACCGAAGTGCAATTTTTACA
GACCACAACGTCGTTTAACATCAGCAAAGGCCAGGAACAGGTATTGACAG
ATAGAGCGCGTGCAGCGTTGTCCAGCAATATCAATGACCCTATGGAACTT
CGCCGAAGAGTCTTCACAAGTTCCGCAAACACCAGCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2952:57650..58440-

>Gvermi772.t1 ID=Gvermi772.t1|Name=Gvermi772.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=723bp|location=Sequence derived from alignment at ScGOVlb_2952:57650..58440- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCTCGTTCACCTCAAGTCGCAGTTCGTCAGTCTCTTCGTCACCGT
CCTGTCCGGTGTGGCCGAGCTGCTGCTGTTCGGCGCCCTTCTCGGATTCA
ACAAGTATGCCGAGTGTCAAGCGCTCAGGCGCGGCAAGCCGGTCAGCGTT
CGCCTTCACCGCGCGCGAACCAAGTTTCTAGCAATCTTCGCCATGGTCGT
CTTCATCGTTCTCGAGGTCATCATGTCTTTCTTCAGTGACCCGGATTTCA
GTTCCATACCAGATCCTCGCCCATGTGTTTCCATCAGACGGTTTGACCTT
TTCGACACCCAAGTCGTCGGTTTTTTATCAGATTCCGTCTTGATCAACTG
CATTCGTACATCAGAGACCAAGTCATTTCAACATGTAGGCAATCGAAGCA
AGGCAGACAACACCGTGACATGCGCCGACTCCCCATTGTATGAATTTTCG
GATGAAAGCTTTGTTATGCAGCCACTTGACCTAAAGTATTCCAAGGCCTG
CGACCTATTAACTTCATTTGAAACTGGGCGTGAAGAACTAGTTTGTGTGT
TTGGCGTAGCTCAGGGGCGAGATTTCCGTTTTTCCGAACTCATCTTGGAA
GCTCTTATTGAAGACAGAATTGCCAAGAAAACCGAAGTGCAATTTTTACA
GACCACAACGTCGTTTAACATCAGCAAAGGCCAGGAACAGAGTCTTCACA
AGTTCCGCAAACACCAGCTGTGA
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