Gvermi7709.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7709.t1
Unique Name	Gvermi7709.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	230

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_64	contig	ScGOVlb_64:2951203..2951892 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9305.ENSSHAP00000000736
Preferred name	col6a6
PFAMs	Collagen,Kunitz_BPTI,VWA
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K06236,ko:K06238,ko:K19720
KEGG Pathway	ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
GOs	GO:0005575,GO:0005576,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030198,GO:0031012,GO:0032991,GO:0043062,GO:0043933,GO:0044085,GO:0044421,GO:0051259,GO:0051291,GO:0065003,GO:0070206,GO:0070208,GO:0071840
Evalue	5.08e-08
EggNOG OGs	KOG3544@1\|root,KOG3544@2759\|Eukaryota,38DGH@33154\|Opisthokonta,3BA28@33208\|Metazoa,3CSUY@33213\|Bilateria,4858V@7711\|Chordata,48UTA@7742\|Vertebrata,3JMZT@40674\|Mammalia,4K697@9263\|Metatheria
Description	von Willebrand factor type A domain
COG category	W
BRITE	ko00000,ko00001,ko00536,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7709	Gvermi7709	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_64 2951203..2951892 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7709.t1.stop1	Gvermi7709.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_64 2951203..2951205 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7709.t1.CDS1	Gvermi7709.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_64 2951203..2951892 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7709.t1.exon1	Gvermi7709.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_64 2951203..2951892 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7709.t1.start1	Gvermi7709.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_64 2951890..2951892 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7709.t1	Gvermi7709.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_64 2951203..2951892 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_64:2951203..2951892-
coding sequence from alignment at ScGOVlb_64:2951203..2951892-

mRNA sequence

>Gvermi7709.t1 ID=Gvermi7709.t1|Name=Gvermi7709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=230bp
MLALISAFALFFSLGSCMSHEDAKLMYKNTVRTAAAEVERRGCSVNVCFA
VDTSGSVSSYEFGLEKDFLIDITSIVGADSRSKFAAGQYGSQTYLISALT
DDVEAFNLRVRNARFQNDPATSVGSGIVFCDRQLRREMRLNPFSDHANKL
VLLGDGRNNLGGDPIRRANNFRDRANGVVSTVGVGFKDTNALAQIAGSSD
RVFAIDDYVELSFVIDDLVYDICGIVLDA*

spliced messenger RNA

>Gvermi7709.t1 ID=Gvermi7709.t1|Name=Gvermi7709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=690bp|location=Sequence derived from alignment at ScGOVlb_64:2951203..2951892- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGCCCTTATTTCTGCGTTTGCTCTTTTCTTTTCGCTAGGCTCTTG
CATGTCGCATGAAGACGCCAAACTTATGTACAAAAACACAGTCCGGACCG
CTGCTGCCGAAGTGGAGAGACGTGGCTGCAGTGTCAATGTGTGCTTTGCA
GTTGACACAAGCGGATCGGTCAGCTCCTACGAATTTGGCTTAGAAAAAGA
CTTTCTGATTGATATCACCTCTATTGTTGGAGCTGATAGTCGATCCAAAT
TCGCCGCTGGCCAATACGGCTCCCAAACGTACTTGATTTCTGCATTGACG
GATGATGTGGAAGCGTTTAACTTGCGAGTGAGAAATGCCCGCTTTCAGAA
CGACCCGGCAACGTCAGTTGGATCAGGTATTGTCTTCTGTGATAGGCAGC
TTCGGAGAGAGATGCGTTTGAATCCCTTCTCTGACCATGCGAACAAGTTG
GTGTTACTTGGAGATGGCCGAAACAATTTGGGAGGTGATCCCATCCGTCG
TGCAAACAATTTCAGGGATAGAGCTAATGGTGTGGTCTCTACCGTTGGTG
TGGGATTCAAGGACACGAATGCATTAGCTCAAATTGCGGGCTCGTCAGAC
CGTGTGTTTGCGATTGACGACTATGTTGAACTGTCCTTCGTTATTGATGA
CCTTGTTTATGACATTTGCGGCATCGTTCTCGACGCGTAA

protein sequence of Gvermi7709.t1

>Gvermi7709.t1 ID=Gvermi7709.t1|Name=Gvermi7709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=230bp
MLALISAFALFFSLGSCMSHEDAKLMYKNTVRTAAAEVERRGCSVNVCFA
VDTSGSVSSYEFGLEKDFLIDITSIVGADSRSKFAAGQYGSQTYLISALT
DDVEAFNLRVRNARFQNDPATSVGSGIVFCDRQLRREMRLNPFSDHANKL
VLLGDGRNNLGGDPIRRANNFRDRANGVVSTVGVGFKDTNALAQIAGSSD
RVFAIDDYVELSFVIDDLVYDICGIVLDA*

mRNA from alignment at ScGOVlb_64:2951203..2951892-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7709.t1 ID=Gvermi7709.t1|Name=Gvermi7709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=690bp|location=Sequence derived from alignment at ScGOVlb_64:2951203..2951892- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGGCCCTTATTTCTGCGTTTGCTCTTTTCTTTTCGCTAGGCTCTTG
CATGTCGCATGAAGACGCCAAACTTATGTACAAAAACACAGTCCGGACCG
CTGCTGCCGAAGTGGAGAGACGTGGCTGCAGTGTCAATGTGTGCTTTGCA
GTTGACACAAGCGGATCGGTCAGCTCCTACGAATTTGGCTTAGAAAAAGA
CTTTCTGATTGATATCACCTCTATTGTTGGAGCTGATAGTCGATCCAAAT
TCGCCGCTGGCCAATACGGCTCCCAAACGTACTTGATTTCTGCATTGACG
GATGATGTGGAAGCGTTTAACTTGCGAGTGAGAAATGCCCGCTTTCAGAA
CGACCCGGCAACGTCAGTTGGATCAGGTATTGTCTTCTGTGATAGGCAGC
TTCGGAGAGAGATGCGTTTGAATCCCTTCTCTGACCATGCGAACAAGTTG
GTGTTACTTGGAGATGGCCGAAACAATTTGGGAGGTGATCCCATCCGTCG
TGCAAACAATTTCAGGGATAGAGCTAATGGTGTGGTCTCTACCGTTGGTG
TGGGATTCAAGGACACGAATGCATTAGCTCAAATTGCGGGCTCGTCAGAC
CGTGTGTTTGCGATTGACGACTATGTTGAACTGTCCTTCGTTATTGATGA
CCTTGTTTATGACATTTGCGGCATCGTTCTCGACGCGTAA

Coding sequence (CDS) from alignment at ScGOVlb_64:2951203..2951892-

>Gvermi7709.t1 ID=Gvermi7709.t1|Name=Gvermi7709.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=690bp|location=Sequence derived from alignment at ScGOVlb_64:2951203..2951892- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGGCCCTTATTTCTGCGTTTGCTCTTTTCTTTTCGCTAGGCTCTTG
CATGTCGCATGAAGACGCCAAACTTATGTACAAAAACACAGTCCGGACCG
CTGCTGCCGAAGTGGAGAGACGTGGCTGCAGTGTCAATGTGTGCTTTGCA
GTTGACACAAGCGGATCGGTCAGCTCCTACGAATTTGGCTTAGAAAAAGA
CTTTCTGATTGATATCACCTCTATTGTTGGAGCTGATAGTCGATCCAAAT
TCGCCGCTGGCCAATACGGCTCCCAAACGTACTTGATTTCTGCATTGACG
GATGATGTGGAAGCGTTTAACTTGCGAGTGAGAAATGCCCGCTTTCAGAA
CGACCCGGCAACGTCAGTTGGATCAGGTATTGTCTTCTGTGATAGGCAGC
TTCGGAGAGAGATGCGTTTGAATCCCTTCTCTGACCATGCGAACAAGTTG
GTGTTACTTGGAGATGGCCGAAACAATTTGGGAGGTGATCCCATCCGTCG
TGCAAACAATTTCAGGGATAGAGCTAATGGTGTGGTCTCTACCGTTGGTG
TGGGATTCAAGGACACGAATGCATTAGCTCAAATTGCGGGCTCGTCAGAC
CGTGTGTTTGCGATTGACGACTATGTTGAACTGTCCTTCGTTATTGATGA
CCTTGTTTATGACATTTGCGGCATCGTTCTCGACGCGTAA