Gvermi7708.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7708.t1
Unique NameGvermi7708.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length193
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2904166..2906478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7708Gvermi7708Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2904166..2906478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7708.t1Gvermi7708.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2904166..2906478 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7708.t1.start1Gvermi7708.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2904166..2904168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7708.t1.CDS1Gvermi7708.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2904166..2904308 +
Gvermi7708.t1.CDS2Gvermi7708.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2906043..2906478 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7708.t1.exon1Gvermi7708.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2904166..2904308 +
Gvermi7708.t1.exon2Gvermi7708.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2906043..2906478 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7708.t1.intron1Gvermi7708.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 2904309..2906042 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7708.t1.stop1Gvermi7708.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2906476..2906478 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7708.t1 ID=Gvermi7708.t1|Name=Gvermi7708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=193bp
MAYKKFRKEPNQLLEKGAVQLLRDREDEENEDPIQEAVELLQFEVVQSFS
RRKNVDHEIWNNLLPLLARLDCDDKATEVAEKIDHSIRTENSFIAYNQER
IQALARHCESSEEIYRNFAEEEADYKQVITRGGVISMSKPEGYQIGEVHF
TEAMKELYSSPIAVAYSSEMNLKQGYKDHGMYKKAQEFLEKH*
back to top

spliced messenger RNA

>Gvermi7708.t1 ID=Gvermi7708.t1|Name=Gvermi7708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=579bp|location=Sequence derived from alignment at ScGOVlb_64:2904166..2906478+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATACAAGAAGTTTCGCAAAGAACCAAATCAGCTGTTGGAAAAGGG
GGCGGTGCAACTGCTGCGGGATAGAGAGGACGAAGAAAATGAAGATCCCA
TACAGGAGGCTGTGGAGCTGTTGCAGTTTGAGGTAGTGCAGTCATTCTCG
AGGAGAAAAAACGTCGATCATGAGATATGGAACAACCTTTTGCCCTTGCT
AGCTCGTCTGGATTGTGACGACAAAGCGACAGAAGTTGCGGAGAAGATCG
ACCACAGCATTCGGACGGAGAACAGCTTCATTGCATACAATCAAGAAAGG
ATTCAGGCATTAGCCCGGCACTGTGAAAGCTCTGAAGAGATTTACAGGAA
CTTTGCAGAAGAAGAAGCAGATTATAAGCAGGTCATAACTCGTGGCGGAG
TGATATCGATGTCCAAACCAGAAGGTTATCAGATAGGAGAAGTACACTTT
ACGGAAGCGATGAAAGAACTGTACAGCAGCCCTATCGCGGTGGCCTATTC
AAGCGAGATGAATCTCAAACAAGGTTACAAAGACCACGGGATGTATAAGA
AGGCCCAAGAATTCCTGGAAAAACATTGA
back to top

protein sequence of Gvermi7708.t1

>Gvermi7708.t1 ID=Gvermi7708.t1|Name=Gvermi7708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=193bp
MAYKKFRKEPNQLLEKGAVQLLRDREDEENEDPIQEAVELLQFEVVQSFS
RRKNVDHEIWNNLLPLLARLDCDDKATEVAEKIDHSIRTENSFIAYNQER
IQALARHCESSEEIYRNFAEEEADYKQVITRGGVISMSKPEGYQIGEVHF
TEAMKELYSSPIAVAYSSEMNLKQGYKDHGMYKKAQEFLEKH*
back to top

mRNA from alignment at ScGOVlb_64:2904166..2906478+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7708.t1 ID=Gvermi7708.t1|Name=Gvermi7708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2313bp|location=Sequence derived from alignment at ScGOVlb_64:2904166..2906478+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATACAAGAAGTTTCGCAAAGAACCAAATCAGCTGTTGGAAAAGGG
GGCGGTGCAACTGCTGCGGGATAGAGAGGACGAAGAAAATGAAGATCCCA
TACAGGAGGCTGTGGAGCTGTTGCAGTTTGAGGTAGTGCAGTCGTATGTG
GGCGGCAGGCGCATGCGAATTCTGTCTCCGTAGTGCTCAATAGTTTCGGA
GGAGCGCTTTAGCAGGCACTCCATATCCTGGAGTCCAGAAGTCCCACCTA
GGAACTCCTGGGCGCGACAGCGCTCCTCCGTTAACATTTCGTGCGAGTCA
TGACGCCAATTACATGACTACCGCTATGCAGTCGTCTGTCGGTCACAATA
CGCTGCTGGAAGAACAGACGCTTAAACAAACATGACGGAAGAAGTGACTG
AGTCATCTGCGGCTGCTGCTCAAAGTTGTAGAACGTCAGTTATTTCAGTG
CTCATATACAAGCGATGCGGCGGGGCGGATGCGTATTTCGCTATAACTCC
CGACTCTCTCCCAAGGGACCCATACAATGTATTCTTAGTGCTCAAGTTTG
AGAGCGCATCTTGATCTGCGTAGCATGGCGTCGCCATAGCCTACTTACAT
GCCCGTGATTGGGATTCCGGCATAACTGTGTTGGAGCATGCGGCGATCGA
TGACGTTGACAACATGTTTACCGGCGTAGACAAAATCACCGGACTAGACA
TACTCGCTGCGCTGGGTTGGGCATATTTCAAGAAAGCGAAACAGAACATT
CCCCCTTAGAAAGGACAAGACCTCCTGAGAAGTGCTGTCGATATGATTGC
TCGTGATGAGAAGTCTGACATGGATTATCCCGCCGTTTAGACCGCTAGAG
CGTTGGCCGAACAACACGGAGAAAATATCAGTACCACAACTTCGATTGAT
CATGCCATGGCGAACGGGCTAGTACTTGGTGCCATCGCCCTCCCCGCACT
GATACTGAATAAGCCGTCAAGACACAAGCATCCTGTAGCCCTACTAACCT
CGGCGTTGCGACGCAACATTTGTCCGCCTTGTGTCTGGACTGGTCCTGCA
TACGCTCTCTATCACGATGATTCTATATCACGATGATTCCTTGGCAGACG
CTCGTGCATTAACCAAGAGGGCTATTTCTGCTGTACGAGACAGTTCAGAA
GAAGAACGTCTCGAAGCTCTGTAAGTTATCGTTCTGGTTGATATAAAAGA
TCGAGCAGAATCGTCACCTGATGTTATTGCCTACACTCTTTCAGAAGCAT
TTGAGATCGTGGGCAGCCGTGACCTCGCTTTTTGTGCATTGCCCCACAGT
TCTACTTCTCCGGCGGGCTTTCGATAAGTCTGAGTTTTACGCCAGAGGAA
CCGCGTAGGTGAGCAATACTCTACCTGGTCACAACGTAGGGCATTTGTTC
GGTAGTTGCAAGGTCGACGTCAAATTTGAAGCGCTTTTAAGCATGGTCGA
GCATTGCATCACTTTCATCGTGCCACGGAAGCAATGAATACTTTCGAAAA
GGCTAAGAAGGTTGAAGGGCGCGTAGATCCTGGGGATCTATTGCAATTTG
ACATGCTAAAGCTTGCTTCAGAATTTGATTAATCAAAAGAGGATGAACCT
GTAGCTCAAGACTGGTTGGAACGTGTCCTAATGATTGACGAACGATGTGC
CATGTCGAAGCGCGCGCTCGGGGTCGTGCTGGGAAGAAGAATATTGCTCA
GACTGCAAAGAGGGAAGGCTCACGCGGGCAAAATATACCAGAGAGCAGTC
CCTATGCTTTCCAAAGGAGTAGCCACTGAAGGCGGTGACATCGATGTTCC
AGCATTACTTTTTCTCGCTGGATTGGTGGAGGAGTATCACCGTCAAGAAG
CTGTTGAATTTTATCGGAAGGCTATAGATTCTCGAGGAGAAAAAACGTCG
ATCATGAGATATGGAACAACCTTTTGCCCTTGCTAGCTCGTCTGGATTGT
GACGACAAAGCGACAGAAGTTGCGGAGAAGATCGACCACAGCATTCGGAC
GGAGAACAGCTTCATTGCATACAATCAAGAAAGGATTCAGGCATTAGCCC
GGCACTGTGAAAGCTCTGAAGAGATTTACAGGAACTTTGCAGAAGAAGAA
GCAGATTATAAGCAGGTCATAACTCGTGGCGGAGTGATATCGATGTCCAA
ACCAGAAGGTTATCAGATAGGAGAAGTACACTTTACGGAAGCGATGAAAG
AACTGTACAGCAGCCCTATCGCGGTGGCCTATTCAAGCGAGATGAATCTC
AAACAAGGTTACAAAGACCACGGGATGTATAAGAAGGCCCAAGAATTCCT
GGAAAAACATTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_64:2904166..2906478+

>Gvermi7708.t1 ID=Gvermi7708.t1|Name=Gvermi7708.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=579bp|location=Sequence derived from alignment at ScGOVlb_64:2904166..2906478+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATACAAGAAGTTTCGCAAAGAACCAAATCAGCTGTTGGAAAAGGG
GGCGGTGCAACTGCTGCGGGATAGAGAGGACGAAGAAAATGAAGATCCCA
TACAGGAGGCTGTGGAGCTGTTGCAGTTTGAGGTAGTGCAGTCATTCTCG
AGGAGAAAAAACGTCGATCATGAGATATGGAACAACCTTTTGCCCTTGCT
AGCTCGTCTGGATTGTGACGACAAAGCGACAGAAGTTGCGGAGAAGATCG
ACCACAGCATTCGGACGGAGAACAGCTTCATTGCATACAATCAAGAAAGG
ATTCAGGCATTAGCCCGGCACTGTGAAAGCTCTGAAGAGATTTACAGGAA
CTTTGCAGAAGAAGAAGCAGATTATAAGCAGGTCATAACTCGTGGCGGAG
TGATATCGATGTCCAAACCAGAAGGTTATCAGATAGGAGAAGTACACTTT
ACGGAAGCGATGAAAGAACTGTACAGCAGCCCTATCGCGGTGGCCTATTC
AAGCGAGATGAATCTCAAACAAGGTTACAAAGACCACGGGATGTATAAGA
AGGCCCAAGAATTCCTGGAAAAACATTGA
back to top