Gvermi7702.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7702.t1
Unique NameGvermi7702.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2807166..2807822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog999541.bgla_1g28140
PFAMsLactonase
Max annot lvl28216|Betaproteobacteria
Evalue5.44e-11
EggNOG OGsCOG2706@1|root,COG2706@2|Bacteria,1MWTE@1224|Proteobacteria,2WF86@28216|Betaproteobacteria,1KA7G@119060|Burkholderiaceae
DescriptionLactonase, 7-bladed beta-propeller
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7702Gvermi7702Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2807166..2807822 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7702.t1.stop1Gvermi7702.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2807166..2807168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7702.t1.CDS1Gvermi7702.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2807166..2807822 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7702.t1.exon1Gvermi7702.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2807166..2807822 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7702.t1.start1Gvermi7702.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2807820..2807822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7702.t1Gvermi7702.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2807166..2807822 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7702.t1 ID=Gvermi7702.t1|Name=Gvermi7702.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=219bp
LFSSANALTSGTLNQLVVFRVCRGGLLSAQPVGGVSSTAINNAQGRNLPS
AIGFEIIVSRGVQYVVVPEVRGLAGADGGAPANQSASVSTWRLDASSRLQ
PVQLDVPVGASVTDGQVDPCWIQFSPDRRRFWVSNTGSNSLSAFTFEGGR
ATLAVEVAATGANPVDLWISSDGRFVYQMFTGTLVAYAVGDGGAGVALTE
IQRTTDLPPMNSQGVVAF*
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spliced messenger RNA

>Gvermi7702.t1 ID=Gvermi7702.t1|Name=Gvermi7702.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=657bp|location=Sequence derived from alignment at ScGOVlb_64:2807166..2807822- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTTCTCGAGCGCCAACGCGCTGACGTCCGGCACGCTCAACCAGCTGGT
CGTTTTCCGCGTGTGCCGCGGCGGGCTGCTCAGCGCCCAGCCCGTGGGCG
GCGTGTCATCCACCGCAATCAACAACGCGCAGGGGCGCAACCTGCCGTCC
GCCATCGGCTTTGAAATCATCGTGTCGCGCGGCGTGCAGTACGTCGTGGT
GCCCGAGGTGCGCGGGCTGGCGGGCGCGGACGGCGGCGCGCCGGCCAACC
AGTCGGCGTCCGTGTCCACGTGGCGTCTAGACGCGAGCAGCCGCCTGCAG
CCGGTGCAGCTGGACGTGCCGGTGGGCGCGTCCGTGACGGACGGGCAGGT
GGACCCGTGCTGGATCCAGTTCTCGCCGGACCGGCGCCGCTTCTGGGTGT
CCAACACCGGGTCCAACTCGCTGTCGGCGTTCACGTTTGAGGGCGGGCGC
GCGACGCTGGCGGTGGAGGTGGCGGCCACGGGCGCCAACCCCGTCGACCT
GTGGATCTCGTCCGACGGCCGCTTCGTGTACCAGATGTTCACTGGGACGC
TGGTGGCGTATGCCGTGGGCGACGGCGGCGCCGGCGTGGCGCTCACCGAG
ATCCAGCGCACCACCGACCTGCCGCCCATGAATTCGCAAGGCGTCGTCGC
CTTCTAG
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protein sequence of Gvermi7702.t1

>Gvermi7702.t1 ID=Gvermi7702.t1|Name=Gvermi7702.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=219bp
LFSSANALTSGTLNQLVVFRVCRGGLLSAQPVGGVSSTAINNAQGRNLPS
AIGFEIIVSRGVQYVVVPEVRGLAGADGGAPANQSASVSTWRLDASSRLQ
PVQLDVPVGASVTDGQVDPCWIQFSPDRRRFWVSNTGSNSLSAFTFEGGR
ATLAVEVAATGANPVDLWISSDGRFVYQMFTGTLVAYAVGDGGAGVALTE
IQRTTDLPPMNSQGVVAF*
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mRNA from alignment at ScGOVlb_64:2807166..2807822-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7702.t1 ID=Gvermi7702.t1|Name=Gvermi7702.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=657bp|location=Sequence derived from alignment at ScGOVlb_64:2807166..2807822- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTTCTCGAGCGCCAACGCGCTGACGTCCGGCACGCTCAACCAGCTGGT
CGTTTTCCGCGTGTGCCGCGGCGGGCTGCTCAGCGCCCAGCCCGTGGGCG
GCGTGTCATCCACCGCAATCAACAACGCGCAGGGGCGCAACCTGCCGTCC
GCCATCGGCTTTGAAATCATCGTGTCGCGCGGCGTGCAGTACGTCGTGGT
GCCCGAGGTGCGCGGGCTGGCGGGCGCGGACGGCGGCGCGCCGGCCAACC
AGTCGGCGTCCGTGTCCACGTGGCGTCTAGACGCGAGCAGCCGCCTGCAG
CCGGTGCAGCTGGACGTGCCGGTGGGCGCGTCCGTGACGGACGGGCAGGT
GGACCCGTGCTGGATCCAGTTCTCGCCGGACCGGCGCCGCTTCTGGGTGT
CCAACACCGGGTCCAACTCGCTGTCGGCGTTCACGTTTGAGGGCGGGCGC
GCGACGCTGGCGGTGGAGGTGGCGGCCACGGGCGCCAACCCCGTCGACCT
GTGGATCTCGTCCGACGGCCGCTTCGTGTACCAGATGTTCACTGGGACGC
TGGTGGCGTATGCCGTGGGCGACGGCGGCGCCGGCGTGGCGCTCACCGAG
ATCCAGCGCACCACCGACCTGCCGCCCATGAATTCGCAAGGCGTCGTCGC
CTTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:2807166..2807822-

>Gvermi7702.t1 ID=Gvermi7702.t1|Name=Gvermi7702.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=657bp|location=Sequence derived from alignment at ScGOVlb_64:2807166..2807822- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTTCTCGAGCGCCAACGCGCTGACGTCCGGCACGCTCAACCAGCTGGT
CGTTTTCCGCGTGTGCCGCGGCGGGCTGCTCAGCGCCCAGCCCGTGGGCG
GCGTGTCATCCACCGCAATCAACAACGCGCAGGGGCGCAACCTGCCGTCC
GCCATCGGCTTTGAAATCATCGTGTCGCGCGGCGTGCAGTACGTCGTGGT
GCCCGAGGTGCGCGGGCTGGCGGGCGCGGACGGCGGCGCGCCGGCCAACC
AGTCGGCGTCCGTGTCCACGTGGCGTCTAGACGCGAGCAGCCGCCTGCAG
CCGGTGCAGCTGGACGTGCCGGTGGGCGCGTCCGTGACGGACGGGCAGGT
GGACCCGTGCTGGATCCAGTTCTCGCCGGACCGGCGCCGCTTCTGGGTGT
CCAACACCGGGTCCAACTCGCTGTCGGCGTTCACGTTTGAGGGCGGGCGC
GCGACGCTGGCGGTGGAGGTGGCGGCCACGGGCGCCAACCCCGTCGACCT
GTGGATCTCGTCCGACGGCCGCTTCGTGTACCAGATGTTCACTGGGACGC
TGGTGGCGTATGCCGTGGGCGACGGCGGCGCCGGCGTGGCGCTCACCGAG
ATCCAGCGCACCACCGACCTGCCGCCCATGAATTCGCAAGGCGTCGTCGC
CTTCTAG
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