Gvermi7700.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7700.t1
Unique NameGvermi7700.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2801293..2802445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7700Gvermi7700Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2801293..2802445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7700.t1Gvermi7700.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2801293..2802445 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7700.t1.stop1Gvermi7700.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2801293..2801295 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7700.t1.CDS1Gvermi7700.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2801293..2801958 -
Gvermi7700.t1.CDS2Gvermi7700.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2802053..2802201 -
Gvermi7700.t1.CDS3Gvermi7700.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2802301..2802445 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7700.t1.exon1Gvermi7700.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2801293..2801958 -
Gvermi7700.t1.exon2Gvermi7700.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2802053..2802201 -
Gvermi7700.t1.exon3Gvermi7700.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2802301..2802445 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7700.t1.intron1Gvermi7700.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 2801959..2802052 -
Gvermi7700.t1.intron2Gvermi7700.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 2802202..2802300 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7700.t1.start1Gvermi7700.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2802443..2802445 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7700.t1 ID=Gvermi7700.t1|Name=Gvermi7700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=320bp
MLFPSRSNALALPRCLLLFVVLAPFCARAVRSASLPGSPISNEELILGPP
AENSQLPKCGQSRHGAEACSEIVCQESLIMDQGPVVNGERCICSCCNGQQ
ATCLTSFESAGSIMRCRCRRKSTEQAGSSSSSTDEEQNKEASTDSSASSD
EENVPDCVETAWLKRNGLSHGILMERPPTTVLCIPGLPCATPGHLLRRCD
AGAPHSCRLLTYERMCRDGADCEYRCSAVSRLSNAVDWSVVAARTADDSS
VFLTSLSMHASGSRFSVSYAVALVAHWLIARGYGQFCDSALLFVLRLAQF
NPLKAVLDALRSIPVASSM*
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spliced messenger RNA

>Gvermi7700.t1 ID=Gvermi7700.t1|Name=Gvermi7700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=960bp|location=Sequence derived from alignment at ScGOVlb_64:2801293..2802445- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTTTCCTTCTCGTTCAAACGCCCTCGCGCTCCCTCGCTGCCTACT
GCTTTTCGTGGTCCTTGCGCCGTTCTGTGCGAGGGCCGTGCGCTCCGCGT
CGCTTCCTGGCTCACCTATCTCGAACGAAGAACTCATTCTCGGCCCGCCC
GCCGAGAACTCGCAACTTCCAAAATGTGGTCAATCTCGACATGGAGCTGA
GGCATGTTCCGAAATAGTGTGTCAGGAATCGCTCATTATGGACCAAGGTC
CGGTTGTCAACGGTGAACGATGCATTTGTTCGTGCTGCAACGGACAACAG
GCTACTTGTCTGACTTCTTTCGAGTCAGCGGGCAGTATCATGAGATGTCG
CTGCCGCAGAAAGTCCACCGAACAGGCAGGATCTTCCAGCTCGTCCACCG
ACGAAGAGCAGAACAAAGAAGCAAGTACCGACAGCTCTGCCTCCTCGGAC
GAAGAGAACGTCCCAGACTGTGTTGAAACCGCGTGGCTCAAGCGCAACGG
CCTCAGCCACGGCATACTGATGGAAAGACCCCCCACAACGGTGCTCTGCA
TTCCTGGTCTGCCGTGTGCCACTCCGGGCCATCTTCTCCGCCGCTGCGAC
GCAGGTGCGCCCCACAGCTGTCGCCTCCTCACCTACGAACGCATGTGTCG
CGACGGGGCCGACTGCGAGTACCGGTGCTCTGCCGTTTCGCGACTTTCAA
ATGCCGTGGACTGGAGCGTGGTGGCCGCCCGCACGGCGGATGACAGCTCG
GTCTTCCTCACAAGCCTCAGCATGCACGCAAGCGGCAGCCGCTTCTCCGT
TTCTTATGCGGTGGCGCTCGTTGCTCATTGGCTTATTGCGCGCGGATACG
GACAGTTTTGCGACTCGGCGCTGCTTTTTGTGCTCCGCTTAGCACAGTTC
AATCCCTTGAAAGCGGTTTTGGATGCACTTCGGTCGATCCCCGTGGCCAG
CAGCATGTGA
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protein sequence of Gvermi7700.t1

>Gvermi7700.t1 ID=Gvermi7700.t1|Name=Gvermi7700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=320bp
MLFPSRSNALALPRCLLLFVVLAPFCARAVRSASLPGSPISNEELILGPP
AENSQLPKCGQSRHGAEACSEIVCQESLIMDQGPVVNGERCICSCCNGQQ
ATCLTSFESAGSIMRCRCRRKSTEQAGSSSSSTDEEQNKEASTDSSASSD
EENVPDCVETAWLKRNGLSHGILMERPPTTVLCIPGLPCATPGHLLRRCD
AGAPHSCRLLTYERMCRDGADCEYRCSAVSRLSNAVDWSVVAARTADDSS
VFLTSLSMHASGSRFSVSYAVALVAHWLIARGYGQFCDSALLFVLRLAQF
NPLKAVLDALRSIPVASSM*
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mRNA from alignment at ScGOVlb_64:2801293..2802445-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7700.t1 ID=Gvermi7700.t1|Name=Gvermi7700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1153bp|location=Sequence derived from alignment at ScGOVlb_64:2801293..2802445- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCTTTCCTTCTCGTTCAAACGCCCTCGCGCTCCCTCGCTGCCTACT
GCTTTTCGTGGTCCTTGCGCCGTTCTGTGCGAGGGCCGTGCGCTCCGCGT
CGCTTCCTGGCTCACCTATCTCGAACGAAGAACTCATTCTCGGCCGTAAG
TCTTTCCAGCCTCTCTTTCATTCAGTCGCCTTTGCCGCTGCCCCATCGCG
CTGACGAATACATGTGTTTCCCTGTTTTTGTTGTTACTGAATAGCGCCCG
CCGAGAACTCGCAACTTCCAAAATGTGGTCAATCTCGACATGGAGCTGAG
GCATGTTCCGAAATAGTGTGTCAGGAATCGCTCATTATGGACCAAGGTCC
GGTTGTCAACGGTGAACGATGCATTTGTTCGTGCTGCAACGGAGTAAGTA
ACTTCATTTTTCCTCACAGACTTTGCGCAAATTGCGCGCTCAAGTAAACA
CCACGCGCTAACATTGTAACACTGTTTCAACTAACAGCAACAGGCTACTT
GTCTGACTTCTTTCGAGTCAGCGGGCAGTATCATGAGATGTCGCTGCCGC
AGAAAGTCCACCGAACAGGCAGGATCTTCCAGCTCGTCCACCGACGAAGA
GCAGAACAAAGAAGCAAGTACCGACAGCTCTGCCTCCTCGGACGAAGAGA
ACGTCCCAGACTGTGTTGAAACCGCGTGGCTCAAGCGCAACGGCCTCAGC
CACGGCATACTGATGGAAAGACCCCCCACAACGGTGCTCTGCATTCCTGG
TCTGCCGTGTGCCACTCCGGGCCATCTTCTCCGCCGCTGCGACGCAGGTG
CGCCCCACAGCTGTCGCCTCCTCACCTACGAACGCATGTGTCGCGACGGG
GCCGACTGCGAGTACCGGTGCTCTGCCGTTTCGCGACTTTCAAATGCCGT
GGACTGGAGCGTGGTGGCCGCCCGCACGGCGGATGACAGCTCGGTCTTCC
TCACAAGCCTCAGCATGCACGCAAGCGGCAGCCGCTTCTCCGTTTCTTAT
GCGGTGGCGCTCGTTGCTCATTGGCTTATTGCGCGCGGATACGGACAGTT
TTGCGACTCGGCGCTGCTTTTTGTGCTCCGCTTAGCACAGTTCAATCCCT
TGAAAGCGGTTTTGGATGCACTTCGGTCGATCCCCGTGGCCAGCAGCATG
TGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:2801293..2802445-

>Gvermi7700.t1 ID=Gvermi7700.t1|Name=Gvermi7700.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=960bp|location=Sequence derived from alignment at ScGOVlb_64:2801293..2802445- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCTTTCCTTCTCGTTCAAACGCCCTCGCGCTCCCTCGCTGCCTACT
GCTTTTCGTGGTCCTTGCGCCGTTCTGTGCGAGGGCCGTGCGCTCCGCGT
CGCTTCCTGGCTCACCTATCTCGAACGAAGAACTCATTCTCGGCCCGCCC
GCCGAGAACTCGCAACTTCCAAAATGTGGTCAATCTCGACATGGAGCTGA
GGCATGTTCCGAAATAGTGTGTCAGGAATCGCTCATTATGGACCAAGGTC
CGGTTGTCAACGGTGAACGATGCATTTGTTCGTGCTGCAACGGACAACAG
GCTACTTGTCTGACTTCTTTCGAGTCAGCGGGCAGTATCATGAGATGTCG
CTGCCGCAGAAAGTCCACCGAACAGGCAGGATCTTCCAGCTCGTCCACCG
ACGAAGAGCAGAACAAAGAAGCAAGTACCGACAGCTCTGCCTCCTCGGAC
GAAGAGAACGTCCCAGACTGTGTTGAAACCGCGTGGCTCAAGCGCAACGG
CCTCAGCCACGGCATACTGATGGAAAGACCCCCCACAACGGTGCTCTGCA
TTCCTGGTCTGCCGTGTGCCACTCCGGGCCATCTTCTCCGCCGCTGCGAC
GCAGGTGCGCCCCACAGCTGTCGCCTCCTCACCTACGAACGCATGTGTCG
CGACGGGGCCGACTGCGAGTACCGGTGCTCTGCCGTTTCGCGACTTTCAA
ATGCCGTGGACTGGAGCGTGGTGGCCGCCCGCACGGCGGATGACAGCTCG
GTCTTCCTCACAAGCCTCAGCATGCACGCAAGCGGCAGCCGCTTCTCCGT
TTCTTATGCGGTGGCGCTCGTTGCTCATTGGCTTATTGCGCGCGGATACG
GACAGTTTTGCGACTCGGCGCTGCTTTTTGTGCTCCGCTTAGCACAGTTC
AATCCCTTGAAAGCGGTTTTGGATGCACTTCGGTCGATCCCCGTGGCCAG
CAGCATGTGA
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