Gvermi7696.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7696.t2
Unique NameGvermi7696.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length132
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2711300..2711695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7696Gvermi7696Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2711300..2745450 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7696.t2.start1Gvermi7696.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2711300..2711302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7696.t2.CDS1Gvermi7696.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2711300..2711695 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7696.t2.exon1Gvermi7696.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2711300..2711695 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7696.t2.stop1Gvermi7696.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2711693..2711695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7696.t2Gvermi7696.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2711300..2711695 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7696.t2 ID=Gvermi7696.t2|Name=Gvermi7696.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=132bp
MGTHTMFDNFGRRQLLRQLPAPREDYFTNYVGVPVHIPKPEDVAGDPENP
GCEWNVDGRERFWPMSQADCALGIDVVSQEAGLGTLETIMKSYISAPGLW
VRDDLVCAMTHLGGRMNEQCDGTNPLFGSVY*
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spliced messenger RNA

>Gvermi7696.t2 ID=Gvermi7696.t2|Name=Gvermi7696.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=396bp|location=Sequence derived from alignment at ScGOVlb_64:2711300..2711695+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACCCACACCATGTTTGACAATTTTGGCCGTAGACAACTGCTGCG
CCAGCTACCGGCTCCGAGGGAAGACTATTTCACCAACTATGTCGGCGTGC
CGGTGCACATTCCGAAACCTGAGGATGTGGCTGGAGACCCGGAGAACCCC
GGTTGTGAGTGGAATGTTGATGGACGGGAAAGATTTTGGCCAATGTCGCA
AGCCGATTGTGCCCTGGGCATTGATGTTGTCTCCCAAGAAGCTGGTTTGG
GAACGTTGGAGACCATCATGAAGTCATACATTAGCGCGCCGGGTTTGTGG
GTTCGAGACGATTTGGTATGTGCAATGACGCATTTAGGGGGACGGATGAA
TGAGCAATGTGACGGAACAAATCCCCTATTTGGTTCCGTGTACTGA
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protein sequence of Gvermi7696.t2

>Gvermi7696.t2 ID=Gvermi7696.t2|Name=Gvermi7696.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=132bp
MGTHTMFDNFGRRQLLRQLPAPREDYFTNYVGVPVHIPKPEDVAGDPENP
GCEWNVDGRERFWPMSQADCALGIDVVSQEAGLGTLETIMKSYISAPGLW
VRDDLVCAMTHLGGRMNEQCDGTNPLFGSVY*
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mRNA from alignment at ScGOVlb_64:2711300..2711695+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7696.t2 ID=Gvermi7696.t2|Name=Gvermi7696.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=396bp|location=Sequence derived from alignment at ScGOVlb_64:2711300..2711695+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCACCCACACCATGTTTGACAATTTTGGCCGTAGACAACTGCTGCG
CCAGCTACCGGCTCCGAGGGAAGACTATTTCACCAACTATGTCGGCGTGC
CGGTGCACATTCCGAAACCTGAGGATGTGGCTGGAGACCCGGAGAACCCC
GGTTGTGAGTGGAATGTTGATGGACGGGAAAGATTTTGGCCAATGTCGCA
AGCCGATTGTGCCCTGGGCATTGATGTTGTCTCCCAAGAAGCTGGTTTGG
GAACGTTGGAGACCATCATGAAGTCATACATTAGCGCGCCGGGTTTGTGG
GTTCGAGACGATTTGGTATGTGCAATGACGCATTTAGGGGGACGGATGAA
TGAGCAATGTGACGGAACAAATCCCCTATTTGGTTCCGTGTACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:2711300..2711695+

>Gvermi7696.t2 ID=Gvermi7696.t2|Name=Gvermi7696.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=396bp|location=Sequence derived from alignment at ScGOVlb_64:2711300..2711695+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCACCCACACCATGTTTGACAATTTTGGCCGTAGACAACTGCTGCG
CCAGCTACCGGCTCCGAGGGAAGACTATTTCACCAACTATGTCGGCGTGC
CGGTGCACATTCCGAAACCTGAGGATGTGGCTGGAGACCCGGAGAACCCC
GGTTGTGAGTGGAATGTTGATGGACGGGAAAGATTTTGGCCAATGTCGCA
AGCCGATTGTGCCCTGGGCATTGATGTTGTCTCCCAAGAAGCTGGTTTGG
GAACGTTGGAGACCATCATGAAGTCATACATTAGCGCGCCGGGTTTGTGG
GTTCGAGACGATTTGGTATGTGCAATGACGCATTTAGGGGGACGGATGAA
TGAGCAATGTGACGGAACAAATCCCCTATTTGGTTCCGTGTACTGA
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