Gvermi7694.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7694.t1
Unique NameGvermi7694.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2657328..2658590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7694Gvermi7694Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2657328..2658590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7694.t1Gvermi7694.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2657328..2658590 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7694.t1.start1Gvermi7694.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2657328..2657330 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7694.t1.CDS1Gvermi7694.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2657328..2657719 +
Gvermi7694.t1.CDS2Gvermi7694.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2658071..2658590 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7694.t1.exon1Gvermi7694.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2657328..2657719 +
Gvermi7694.t1.exon2Gvermi7694.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2658071..2658590 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7694.t1.intron1Gvermi7694.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 2657720..2658070 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7694.t1.stop1Gvermi7694.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2658588..2658590 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7694.t1 ID=Gvermi7694.t1|Name=Gvermi7694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=304bp
MLCLSLVMAQQSDPGSASDVRFGNAVGLENAPGTPLTTSKTESPLQRQQR
LNGEIPEPRGGEEPNIAEIYNPMQDAKCFNTPYDTSIPTSKRETLFSDYV
NIFEWGFNMGSVSPIFSISENGVTNNRFAGILDGKNPLCGPTELLPPVTF
SASQSNSWFTSRGLPERQWLSLMGTHTTFDNFGRRQLLRQLPTPREDYFT
NYVGVPVHIPKPGDVAGDPENPGCEWNVDGRERIWPMSQADCALGIDVIS
QEAGLGTLETIMNSYITAPGSWVRDDLVCAMTLLGGRMNEQCDGTNPLFG
SVY*
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spliced messenger RNA

>Gvermi7694.t1 ID=Gvermi7694.t1|Name=Gvermi7694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=912bp|location=Sequence derived from alignment at ScGOVlb_64:2657328..2658590+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTGCCTCTCATTAGTCATGGCGCAGCAATCTGACCCGGGAAGTGC
GTCTGACGTGAGATTTGGTAATGCCGTAGGCTTGGAGAATGCCCCAGGGA
CCCCTCTTACTACATCCAAAACGGAATCCCCTCTTCAGCGCCAGCAGCGC
CTTAATGGCGAAATCCCAGAACCCCGGGGTGGGGAGGAACCCAACATTGC
AGAGATTTACAACCCCATGCAAGATGCAAAATGTTTCAACACTCCGTATG
ACACCTCTATACCCACATCCAAACGCGAAACTCTATTTTCGGACTATGTG
AACATCTTCGAGTGGGGATTCAACATGGGGAGCGTGTCCCCGATATTCAG
CATATCGGAGAACGGTGTCACCAACAACCGCTTTGCAGGCATTCTGGACG
GAAAGAATCCCCTGTGCGGTCCGACAGAACTGTTGCCACCCGTGACGTTC
AGCGCGTCGCAGTCCAACTCGTGGTTTACGTCTCGCGGCCTACCGGAACG
GCAATGGCTGTCTCTGATGGGCACCCACACCACGTTTGACAATTTTGGCC
GTAGACAACTGCTGCGCCAGCTGCCAACCCCAAGGGAAGATTATTTCACC
AACTATGTCGGCGTGCCGGTGCACATTCCGAAACCTGGGGATGTGGCTGG
AGACCCGGAGAACCCCGGTTGCGAGTGGAATGTGGATGGACGGGAAAGAA
TCTGGCCAATGTCGCAAGCCGATTGCGCACTGGGCATTGATGTAATTTCC
CAAGAAGCTGGTTTGGGAACGTTGGAGACCATCATGAATTCATACATTAC
CGCGCCGGGCTCGTGGGTTCGAGACGACTTAGTATGTGCAATGACGCTTT
TAGGGGGACGGATGAATGAGCAATGTGACGGAACAAATCCCCTATTTGGT
TCCGTGTACTGA
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protein sequence of Gvermi7694.t1

>Gvermi7694.t1 ID=Gvermi7694.t1|Name=Gvermi7694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=304bp
MLCLSLVMAQQSDPGSASDVRFGNAVGLENAPGTPLTTSKTESPLQRQQR
LNGEIPEPRGGEEPNIAEIYNPMQDAKCFNTPYDTSIPTSKRETLFSDYV
NIFEWGFNMGSVSPIFSISENGVTNNRFAGILDGKNPLCGPTELLPPVTF
SASQSNSWFTSRGLPERQWLSLMGTHTTFDNFGRRQLLRQLPTPREDYFT
NYVGVPVHIPKPGDVAGDPENPGCEWNVDGRERIWPMSQADCALGIDVIS
QEAGLGTLETIMNSYITAPGSWVRDDLVCAMTLLGGRMNEQCDGTNPLFG
SVY*
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mRNA from alignment at ScGOVlb_64:2657328..2658590+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7694.t1 ID=Gvermi7694.t1|Name=Gvermi7694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at ScGOVlb_64:2657328..2658590+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTTGCCTCTCATTAGTCATGGCGCAGCAATCTGACCCGGGAAGTGC
GTCTGACGTGAGATTTGGTAATGCCGTAGGCTTGGAGAATGCCCCAGGGA
CCCCTCTTACTACATCCAAAACGGAATCCCCTCTTCAGCGCCAGCAGCGC
CTTAATGGCGAAATCCCAGAACCCCGGGGTGGGGAGGAACCCAACATTGC
AGAGATTTACAACCCCATGCAAGATGCAAAATGTTTCAACACTCCGTATG
ACACCTCTATACCCACATCCAAACGCGAAACTCTATTTTCGGACTATGTG
AACATCTTCGAGTGGGGATTCAACATGGGGAGCGTGTCCCCGATATTCAG
CATATCGGAGAACGGTGTCACCAACAACCGCTTTGCAGGCATGTgtctga
ggatggcattccacgacaactctctggatcctcaatttggcgaatttgca
tcctacatttccagccgcatcaattcggacaacgagtggactNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgtacgcc
gatgcgctgcataactgtgccctggcagctgtcgcatggttgaatcccac
ggagggggcagccgccctaaatgagATTCGATTTGGAAGAAAAGATGCTT
GCTACTTTTCTGATGACCCACTTCTCGCGACGGATGAATTGAGTCTGGAC
GGAAAGAATCCCCTGTGCGGTCCGACAGAACTGTTGCCACCCGTGACGTT
CAGCGCGTCGCAGTCCAACTCGTGGTTTACGTCTCGCGGCCTACCGGAAC
GGCAATGGCTGTCTCTGATGGGCACCCACACCACGTTTGACAATTTTGGC
CGTAGACAACTGCTGCGCCAGCTGCCAACCCCAAGGGAAGATTATTTCAC
CAACTATGTCGGCGTGCCGGTGCACATTCCGAAACCTGGGGATGTGGCTG
GAGACCCGGAGAACCCCGGTTGCGAGTGGAATGTGGATGGACGGGAAAGA
ATCTGGCCAATGTCGCAAGCCGATTGCGCACTGGGCATTGATGTAATTTC
CCAAGAAGCTGGTTTGGGAACGTTGGAGACCATCATGAATTCATACATTA
CCGCGCCGGGCTCGTGGGTTCGAGACGACTTAGTATGTGCAATGACGCTT
TTAGGGGGACGGATGAATGAGCAATGTGACGGAACAAATCCCCTATTTGG
TTCCGTGTACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:2657328..2658590+

>Gvermi7694.t1 ID=Gvermi7694.t1|Name=Gvermi7694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=912bp|location=Sequence derived from alignment at ScGOVlb_64:2657328..2658590+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTTGCCTCTCATTAGTCATGGCGCAGCAATCTGACCCGGGAAGTGC
GTCTGACGTGAGATTTGGTAATGCCGTAGGCTTGGAGAATGCCCCAGGGA
CCCCTCTTACTACATCCAAAACGGAATCCCCTCTTCAGCGCCAGCAGCGC
CTTAATGGCGAAATCCCAGAACCCCGGGGTGGGGAGGAACCCAACATTGC
AGAGATTTACAACCCCATGCAAGATGCAAAATGTTTCAACACTCCGTATG
ACACCTCTATACCCACATCCAAACGCGAAACTCTATTTTCGGACTATGTG
AACATCTTCGAGTGGGGATTCAACATGGGGAGCGTGTCCCCGATATTCAG
CATATCGGAGAACGGTGTCACCAACAACCGCTTTGCAGGCATTCTGGACG
GAAAGAATCCCCTGTGCGGTCCGACAGAACTGTTGCCACCCGTGACGTTC
AGCGCGTCGCAGTCCAACTCGTGGTTTACGTCTCGCGGCCTACCGGAACG
GCAATGGCTGTCTCTGATGGGCACCCACACCACGTTTGACAATTTTGGCC
GTAGACAACTGCTGCGCCAGCTGCCAACCCCAAGGGAAGATTATTTCACC
AACTATGTCGGCGTGCCGGTGCACATTCCGAAACCTGGGGATGTGGCTGG
AGACCCGGAGAACCCCGGTTGCGAGTGGAATGTGGATGGACGGGAAAGAA
TCTGGCCAATGTCGCAAGCCGATTGCGCACTGGGCATTGATGTAATTTCC
CAAGAAGCTGGTTTGGGAACGTTGGAGACCATCATGAATTCATACATTAC
CGCGCCGGGCTCGTGGGTTCGAGACGACTTAGTATGTGCAATGACGCTTT
TAGGGGGACGGATGAATGAGCAATGTGACGGAACAAATCCCCTATTTGGT
TCCGTGTACTGA
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