Gvermi7690.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7690.t2
Unique NameGvermi7690.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length441
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2484789..2486208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog77586.LPERR04G14790.8
PFAMsC2,Lipase_3
Max annot lvl35493|Streptophyta
GOsGO:0001505,GO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005789,GO:0007154,GO:0007165,GO:0008021,GO:0008150,GO:0009987,GO:0010646,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0019722,GO:0019932,GO:0023051,GO:0023052,GO:0030100,GO:0030133,GO:0030334,GO:0030336,GO:0030658,GO:0030659,GO:0030672,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0035556,GO:0040012,GO:0040013,GO:0042175,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0045202,GO:0045806,GO:0046872,GO:0046928,GO:0048167,GO:0048168,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050804,GO:0050896,GO:0051046,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051270,GO:0051271,GO:0051588,GO:0051716,GO:0055037,GO:0060341,GO:0060627,GO:0065007,GO:0065008,GO:0070382,GO:0080134,GO:0097458,GO:0097708,GO:0098588,GO:0098793,GO:0098805,GO:0098827,GO:0099177,GO:0099501,GO:0099503,GO:1902882,GO:1902883,GO:1903530,GO:2000145,GO:2000146
Evalue7.04e-10
EggNOG OGsKOG4569@1|root,KOG4569@2759|Eukaryota,37K0N@33090|Viridiplantae,3GGZ4@35493|Streptophyta,3KTUR@4447|Liliopsida,3ID1N@38820|Poales
DescriptionC2 domain
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7690Gvermi7690Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2484643..2486208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7690.t2Gvermi7690.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2484789..2486208 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7690.t2.stop1Gvermi7690.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2484789..2484791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7690.t2.CDS1Gvermi7690.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2484789..2484858 -
Gvermi7690.t2.CDS2Gvermi7690.t2.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2484956..2486208 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7690.t2.exon1Gvermi7690.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2484789..2484858 -
Gvermi7690.t2.exon2Gvermi7690.t2.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2484956..2486208 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7690.t2.intron1Gvermi7690.t2.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 2484859..2484955 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7690.t2.start1Gvermi7690.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2486206..2486208 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7690.t2 ID=Gvermi7690.t2|Name=Gvermi7690.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=441bp
MDAPTAFAVHHPHSAGERLHLLSSSVLVRPNFTRRKFKFLLLPFALVLFA
LGFPAANRSFSAHLQWGITSPGKVPNANTELSPKINDQERASQHSNAVRG
GGVHLVAANDKSITPKMLRFAAVAANLSAVVYECKGPGRHLYNQGDFELV
SVVQSHIDGPCAYVVIRKFPTNVIFIAFRGTRISSPNDIVADQNFTLQPL
LNEQVWGSKKGIHAQGGFWGYYMVIQEQIISSFESATAKLDSVDRVVVTG
HSLGGALATLCTTHLLVRYKTQMADMIYMITFGGAVAGDSNFVAYYRELW
GQASAKDQYVYRSIRFTNANDPVPRYTTAHFEQVPTEVEFSNTKDYWPAE
AHAMYTYENMTQMAALMFPELLDYSFALDIFKRDVSADNKKVFLRGEFRI
KGNTYDSKVTVKIVDQPSLQEFVFSYYLNMAHLKSLQIQH*
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spliced messenger RNA

>Gvermi7690.t2 ID=Gvermi7690.t2|Name=Gvermi7690.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at ScGOVlb_64:2484789..2486208- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTCCTACTGCTTTTGCCGTTCATCATCCCCACTCAGCAGGGGA
ACGGCTCCATCTTCTTTCATCATCCGTCTTAGTCCGCCCGAATTTCACCC
GGCGAAAGTTTAAATTCCTTCTGCTCCCATTTGCACTTGTCTTGTTTGCT
CTAGGTTTCCCCGCGGCGAATCGTTCTTTTTCCGCACACCTGCAGTGGGG
CATCACGAGTCCAGGAAAAGTCCCAAACGCAAACACCGAACTCTCTCCCA
AAATCAATGATCAGGAAAGGGCATCGCAGCACTCGAATGCAGTTCGTGGT
GGAGGTGTGCATTTGGTAGCGGCCAATGACAAGTCCATCACTCCAAAAAT
GTTGCGTTTTGCTGCGGTAGCAGCGAATCTATCTGCCGTCGTGTACGAAT
GCAAGGGTCCTGGGAGGCACCTCTACAATCAAGGCGATTTTGAGCTAGTG
TCTGTTGTACAATCTCATATCGACGGCCCTTGTGCATACGTGGTTATTCG
CAAATTCCCAACCAATGTCATATTTATTGCGTTCCGTGGCACGCGAATTT
CCTCGCCAAATGATATCGTTGCCGACCAGAACTTCACTCTTCAGCCGCTC
CTCAATGAACAGGTTTGGGGCTCTAAGAAAGGTATTCATGCACAAGGTGG
GTTCTGGGGCTACTACATGGTAATACAAGAGCAAATCATCAGCTCCTTTG
AGAGTGCAACGGCGAAACTTGACTCGGTGGATAGGGTTGTAGTGACCGGT
CATAGTTTGGGAGGGGCTTTGGCCACGTTGTGTACCACTCACCTGCTCGT
CAGGTACAAGACACAAATGGCAGACATGATATACATGATCACTTTTGGAG
GCGCAGTGGCGGGCGATTCTAACTTTGTCGCATACTACCGAGAGTTGTGG
GGCCAAGCGAGTGCGAAAGATCAATATGTGTATAGAAGCATTCGCTTTAC
CAACGCAAATGACCCGGTGCCCCGGTACACCACTGCTCACTTTGAACAAG
TTCCAACAGAGGTAGAATTCTCGAATACAAAAGACTACTGGCCTGCGGAG
GCGCATGCGATGTACACGTATGAAAATATGACACAAATGGCAGCGCTTAT
GTTTCCGGAGCTTCTTGATTATTCTTTCGCGCTGGACATCTTCAAAAGAG
ATGTGTCTGCGGACAACAAGAAAGTGTTCCTGAGGGGCGAGTTTCGCATC
AAGGGTAACACCTATGACTCGAAGGTGACCGTCAAAATTGTTGATCAACC
ATCACTGCAAGAATTCGTGTTTTCGTATTACTTGAATATGGCGCATCTAA
AATCCCTTCAAATACAACATTAG
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protein sequence of Gvermi7690.t2

>Gvermi7690.t2 ID=Gvermi7690.t2|Name=Gvermi7690.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=441bp
MDAPTAFAVHHPHSAGERLHLLSSSVLVRPNFTRRKFKFLLLPFALVLFA
LGFPAANRSFSAHLQWGITSPGKVPNANTELSPKINDQERASQHSNAVRG
GGVHLVAANDKSITPKMLRFAAVAANLSAVVYECKGPGRHLYNQGDFELV
SVVQSHIDGPCAYVVIRKFPTNVIFIAFRGTRISSPNDIVADQNFTLQPL
LNEQVWGSKKGIHAQGGFWGYYMVIQEQIISSFESATAKLDSVDRVVVTG
HSLGGALATLCTTHLLVRYKTQMADMIYMITFGGAVAGDSNFVAYYRELW
GQASAKDQYVYRSIRFTNANDPVPRYTTAHFEQVPTEVEFSNTKDYWPAE
AHAMYTYENMTQMAALMFPELLDYSFALDIFKRDVSADNKKVFLRGEFRI
KGNTYDSKVTVKIVDQPSLQEFVFSYYLNMAHLKSLQIQH*
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mRNA from alignment at ScGOVlb_64:2484789..2486208-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7690.t2 ID=Gvermi7690.t2|Name=Gvermi7690.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1420bp|location=Sequence derived from alignment at ScGOVlb_64:2484789..2486208- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCTCCTACTGCTTTTGCCGTTCATCATCCCCACTCAGCAGGGGA
ACGGCTCCATCTTCTTTCATCATCCGTCTTAGTCCGCCCGAATTTCACCC
GGCGAAAGTTTAAATTCCTTCTGCTCCCATTTGCACTTGTCTTGTTTGCT
CTAGGTTTCCCCGCGGCGAATCGTTCTTTTTCCGCACACCTGCAGTGGGG
CATCACGAGTCCAGGAAAAGTCCCAAACGCAAACACCGAACTCTCTCCCA
AAATCAATGATCAGGAAAGGGCATCGCAGCACTCGAATGCAGTTCGTGGT
GGAGGTGTGCATTTGGTAGCGGCCAATGACAAGTCCATCACTCCAAAAAT
GTTGCGTTTTGCTGCGGTAGCAGCGAATCTATCTGCCGTCGTGTACGAAT
GCAAGGGTCCTGGGAGGCACCTCTACAATCAAGGCGATTTTGAGCTAGTG
TCTGTTGTACAATCTCATATCGACGGCCCTTGTGCATACGTGGTTATTCG
CAAATTCCCAACCAATGTCATATTTATTGCGTTCCGTGGCACGCGAATTT
CCTCGCCAAATGATATCGTTGCCGACCAGAACTTCACTCTTCAGCCGCTC
CTCAATGAACAGGTTTGGGGCTCTAAGAAAGGTATTCATGCACAAGGTGG
GTTCTGGGGCTACTACATGGTAATACAAGAGCAAATCATCAGCTCCTTTG
AGAGTGCAACGGCGAAACTTGACTCGGTGGATAGGGTTGTAGTGACCGGT
CATAGTTTGGGAGGGGCTTTGGCCACGTTGTGTACCACTCACCTGCTCGT
CAGGTACAAGACACAAATGGCAGACATGATATACATGATCACTTTTGGAG
GCGCAGTGGCGGGCGATTCTAACTTTGTCGCATACTACCGAGAGTTGTGG
GGCCAAGCGAGTGCGAAAGATCAATATGTGTATAGAAGCATTCGCTTTAC
CAACGCAAATGACCCGGTGCCCCGGTACACCACTGCTCACTTTGAACAAG
TTCCAACAGAGGTAGAATTCTCGAATACAAAAGACTACTGGCCTGCGGAG
GCGCATGCGATGTACACGTATGAAAATATGACACAAATGGCAGCGCTTAT
GTTTCCGGAGCTTCTTGATTATTCTTTCGCGCTGGACATCTTCAAAAGAG
ATGTGTCTGCGGACAACAAGAAAGTGTTCCTGAGGGGCGAGTTTCGCATC
AAGGGTAACACCTATGACTCGAAGGTGACCGTCAAAATTGTTGATCAACC
ATCGTATACAACAAAAAAATACGTTGCTTCATGTAGCAACTGCTGGGACG
GGTCGAAAACGTTGGACCGATCCTACTCAGTCTCGTTGGATGCGCACAAG
ACTGCAAGAATTCGTGTTTTCGTATTACTTGAATATGGCGCATCTAAAAT
CCCTTCAAATACAACATTAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:2484789..2486208-

>Gvermi7690.t2 ID=Gvermi7690.t2|Name=Gvermi7690.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1323bp|location=Sequence derived from alignment at ScGOVlb_64:2484789..2486208- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCTCCTACTGCTTTTGCCGTTCATCATCCCCACTCAGCAGGGGA
ACGGCTCCATCTTCTTTCATCATCCGTCTTAGTCCGCCCGAATTTCACCC
GGCGAAAGTTTAAATTCCTTCTGCTCCCATTTGCACTTGTCTTGTTTGCT
CTAGGTTTCCCCGCGGCGAATCGTTCTTTTTCCGCACACCTGCAGTGGGG
CATCACGAGTCCAGGAAAAGTCCCAAACGCAAACACCGAACTCTCTCCCA
AAATCAATGATCAGGAAAGGGCATCGCAGCACTCGAATGCAGTTCGTGGT
GGAGGTGTGCATTTGGTAGCGGCCAATGACAAGTCCATCACTCCAAAAAT
GTTGCGTTTTGCTGCGGTAGCAGCGAATCTATCTGCCGTCGTGTACGAAT
GCAAGGGTCCTGGGAGGCACCTCTACAATCAAGGCGATTTTGAGCTAGTG
TCTGTTGTACAATCTCATATCGACGGCCCTTGTGCATACGTGGTTATTCG
CAAATTCCCAACCAATGTCATATTTATTGCGTTCCGTGGCACGCGAATTT
CCTCGCCAAATGATATCGTTGCCGACCAGAACTTCACTCTTCAGCCGCTC
CTCAATGAACAGGTTTGGGGCTCTAAGAAAGGTATTCATGCACAAGGTGG
GTTCTGGGGCTACTACATGGTAATACAAGAGCAAATCATCAGCTCCTTTG
AGAGTGCAACGGCGAAACTTGACTCGGTGGATAGGGTTGTAGTGACCGGT
CATAGTTTGGGAGGGGCTTTGGCCACGTTGTGTACCACTCACCTGCTCGT
CAGGTACAAGACACAAATGGCAGACATGATATACATGATCACTTTTGGAG
GCGCAGTGGCGGGCGATTCTAACTTTGTCGCATACTACCGAGAGTTGTGG
GGCCAAGCGAGTGCGAAAGATCAATATGTGTATAGAAGCATTCGCTTTAC
CAACGCAAATGACCCGGTGCCCCGGTACACCACTGCTCACTTTGAACAAG
TTCCAACAGAGGTAGAATTCTCGAATACAAAAGACTACTGGCCTGCGGAG
GCGCATGCGATGTACACGTATGAAAATATGACACAAATGGCAGCGCTTAT
GTTTCCGGAGCTTCTTGATTATTCTTTCGCGCTGGACATCTTCAAAAGAG
ATGTGTCTGCGGACAACAAGAAAGTGTTCCTGAGGGGCGAGTTTCGCATC
AAGGGTAACACCTATGACTCGAAGGTGACCGTCAAAATTGTTGATCAACC
ATCACTGCAAGAATTCGTGTTTTCGTATTACTTGAATATGGCGCATCTAA
AATCCCTTCAAATACAACATTAG
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