Gvermi7689.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7689.t1
Unique NameGvermi7689.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2451247..2452230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog521719.ATXQ01000006_gene1342
Max annot lvl1236|Gammaproteobacteria
Evalue5.35e-103
EggNOG OGs28ID6@1|root,2Z8FE@2|Bacteria,1MX0W@1224|Proteobacteria,1S2X2@1236|Gammaproteobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7689Gvermi7689Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2451247..2452230 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7689.t1.stop1Gvermi7689.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2451247..2451249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7689.t1.CDS1Gvermi7689.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2451247..2452230 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7689.t1.exon1Gvermi7689.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2451247..2452230 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7689.t1.start1Gvermi7689.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2452228..2452230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7689.t1Gvermi7689.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2451247..2452230 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7689.t1 ID=Gvermi7689.t1|Name=Gvermi7689.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=328bp
MLWFEKLVGFEEKTSEQVREHLFLIGNKICSSVNGKSYQCGILSTPSLAE
LRCQSEPYIDHGSNICVQEIVGDVRHLHDHPSFHGSVFQVASQFNLLENS
PRETPEKGIGYYQFLKTQGPACAVTCGAGTIYRNYFAEVDGQVGQAFDRQ
INCIKDLGQELGNQNDLLWRVQNGYVFPKDVGLRFINDHMRHADRAKQDE
LRGYLRIGVQQDTEVTNGQSDNVVTQAYCSALSVAYSHHHSNLWESFARL
VLEAAYESTLRVAVLNRQRTGCKHVFLTFLGGGVFGNRIEWIVDAMERAI
LIAKKSGLVVCIVSYGKSCPEIQRLLT*
back to top

spliced messenger RNA

>Gvermi7689.t1 ID=Gvermi7689.t1|Name=Gvermi7689.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_64:2451247..2452230- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTGGTTTGAAAAGCTTGTCGGTTTTGAAGAGAAGACATCGGAGCA
GGTGCGAGAGCATCTCTTCCTTATCGGCAACAAAATTTGCTCTTCAGTCA
ATGGCAAATCGTATCAGTGTGGAATTTTAAGCACTCCATCCCTTGCGGAA
CTACGATGTCAATCAGAACCTTATATAGATCATGGATCGAATATCTGCGT
GCAAGAAATTGTCGGAGATGTTCGCCATCTGCACGATCATCCGTCCTTTC
ATGGGTCTGTCTTCCAAGTTGCATCACAATTTAATCTTTTGGAAAACTCC
CCCAGAGAAACTCCAGAGAAAGGAATAGGATACTATCAGTTTCTCAAAAC
TCAAGGTCCTGCATGTGCTGTTACTTGTGGCGCTGGTACTATATACCGAA
ATTACTTTGCAGAAGTAGATGGCCAAGTTGGGCAGGCTTTTGATAGACAG
ATAAACTGTATAAAGGATCTCGGCCAGGAACTAGGGAACCAGAATGACTT
ACTATGGCGAGTCCAGAACGGGTACGTTTTTCCCAAAGATGTCGGACTTC
GATTTATCAATGATCATATGAGACACGCAGACCGGGCAAAACAAGATGAA
CTTCGTGGTTATCTGAGAATTGGCGTACAGCAAGACACCGAGGTCACAAA
TGGTCAAAGCGACAATGTTGTGACACAGGCATACTGTTCCGCCCTTTCGG
TTGCATATTCTCATCATCACAGCAACCTCTGGGAGTCGTTTGCACGCCTG
GTTCTTGAGGCAGCATATGAGAGCACTTTGCGAGTCGCTGTTCTCAATCG
TCAGCGAACCGGCTGTAAACATGTTTTTCTGACTTTTTTGGGAGGTGGAG
TGTTTGGCAATCGCATTGAATGGATAGTTGATGCTATGGAAAGAGCCATT
TTGATTGCGAAGAAGTCCGGACTTGTTGTGTGCATTGTTAGCTACGGGAA
ATCTTGCCCAGAGATTCAACGACTTCTCACCTAA
back to top

protein sequence of Gvermi7689.t1

>Gvermi7689.t1 ID=Gvermi7689.t1|Name=Gvermi7689.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=328bp
MLWFEKLVGFEEKTSEQVREHLFLIGNKICSSVNGKSYQCGILSTPSLAE
LRCQSEPYIDHGSNICVQEIVGDVRHLHDHPSFHGSVFQVASQFNLLENS
PRETPEKGIGYYQFLKTQGPACAVTCGAGTIYRNYFAEVDGQVGQAFDRQ
INCIKDLGQELGNQNDLLWRVQNGYVFPKDVGLRFINDHMRHADRAKQDE
LRGYLRIGVQQDTEVTNGQSDNVVTQAYCSALSVAYSHHHSNLWESFARL
VLEAAYESTLRVAVLNRQRTGCKHVFLTFLGGGVFGNRIEWIVDAMERAI
LIAKKSGLVVCIVSYGKSCPEIQRLLT*
back to top

mRNA from alignment at ScGOVlb_64:2451247..2452230-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7689.t1 ID=Gvermi7689.t1|Name=Gvermi7689.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_64:2451247..2452230- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCTGGTTTGAAAAGCTTGTCGGTTTTGAAGAGAAGACATCGGAGCA
GGTGCGAGAGCATCTCTTCCTTATCGGCAACAAAATTTGCTCTTCAGTCA
ATGGCAAATCGTATCAGTGTGGAATTTTAAGCACTCCATCCCTTGCGGAA
CTACGATGTCAATCAGAACCTTATATAGATCATGGATCGAATATCTGCGT
GCAAGAAATTGTCGGAGATGTTCGCCATCTGCACGATCATCCGTCCTTTC
ATGGGTCTGTCTTCCAAGTTGCATCACAATTTAATCTTTTGGAAAACTCC
CCCAGAGAAACTCCAGAGAAAGGAATAGGATACTATCAGTTTCTCAAAAC
TCAAGGTCCTGCATGTGCTGTTACTTGTGGCGCTGGTACTATATACCGAA
ATTACTTTGCAGAAGTAGATGGCCAAGTTGGGCAGGCTTTTGATAGACAG
ATAAACTGTATAAAGGATCTCGGCCAGGAACTAGGGAACCAGAATGACTT
ACTATGGCGAGTCCAGAACGGGTACGTTTTTCCCAAAGATGTCGGACTTC
GATTTATCAATGATCATATGAGACACGCAGACCGGGCAAAACAAGATGAA
CTTCGTGGTTATCTGAGAATTGGCGTACAGCAAGACACCGAGGTCACAAA
TGGTCAAAGCGACAATGTTGTGACACAGGCATACTGTTCCGCCCTTTCGG
TTGCATATTCTCATCATCACAGCAACCTCTGGGAGTCGTTTGCACGCCTG
GTTCTTGAGGCAGCATATGAGAGCACTTTGCGAGTCGCTGTTCTCAATCG
TCAGCGAACCGGCTGTAAACATGTTTTTCTGACTTTTTTGGGAGGTGGAG
TGTTTGGCAATCGCATTGAATGGATAGTTGATGCTATGGAAAGAGCCATT
TTGATTGCGAAGAAGTCCGGACTTGTTGTGTGCATTGTTAGCTACGGGAA
ATCTTGCCCAGAGATTCAACGACTTCTCACCTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_64:2451247..2452230-

>Gvermi7689.t1 ID=Gvermi7689.t1|Name=Gvermi7689.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=984bp|location=Sequence derived from alignment at ScGOVlb_64:2451247..2452230- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCTGGTTTGAAAAGCTTGTCGGTTTTGAAGAGAAGACATCGGAGCA
GGTGCGAGAGCATCTCTTCCTTATCGGCAACAAAATTTGCTCTTCAGTCA
ATGGCAAATCGTATCAGTGTGGAATTTTAAGCACTCCATCCCTTGCGGAA
CTACGATGTCAATCAGAACCTTATATAGATCATGGATCGAATATCTGCGT
GCAAGAAATTGTCGGAGATGTTCGCCATCTGCACGATCATCCGTCCTTTC
ATGGGTCTGTCTTCCAAGTTGCATCACAATTTAATCTTTTGGAAAACTCC
CCCAGAGAAACTCCAGAGAAAGGAATAGGATACTATCAGTTTCTCAAAAC
TCAAGGTCCTGCATGTGCTGTTACTTGTGGCGCTGGTACTATATACCGAA
ATTACTTTGCAGAAGTAGATGGCCAAGTTGGGCAGGCTTTTGATAGACAG
ATAAACTGTATAAAGGATCTCGGCCAGGAACTAGGGAACCAGAATGACTT
ACTATGGCGAGTCCAGAACGGGTACGTTTTTCCCAAAGATGTCGGACTTC
GATTTATCAATGATCATATGAGACACGCAGACCGGGCAAAACAAGATGAA
CTTCGTGGTTATCTGAGAATTGGCGTACAGCAAGACACCGAGGTCACAAA
TGGTCAAAGCGACAATGTTGTGACACAGGCATACTGTTCCGCCCTTTCGG
TTGCATATTCTCATCATCACAGCAACCTCTGGGAGTCGTTTGCACGCCTG
GTTCTTGAGGCAGCATATGAGAGCACTTTGCGAGTCGCTGTTCTCAATCG
TCAGCGAACCGGCTGTAAACATGTTTTTCTGACTTTTTTGGGAGGTGGAG
TGTTTGGCAATCGCATTGAATGGATAGTTGATGCTATGGAAAGAGCCATT
TTGATTGCGAAGAAGTCCGGACTTGTTGTGTGCATTGTTAGCTACGGGAA
ATCTTGCCCAGAGATTCAACGACTTCTCACCTAA
back to top