Gvermi7686.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7686.t1
Unique NameGvermi7686.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length451
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2409579..2410931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_00556T0
PFAMsTyrosinase
Max annot lvl2759|Eukaryota
Evalue2.8e-52
EggNOG OGs2CZRH@1|root,2SBDH@2759|Eukaryota
DescriptionCommon central domain of tyrosinase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7686Gvermi7686Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2409579..2410931 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7686.t1.stop1Gvermi7686.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2409579..2409581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7686.t1.CDS1Gvermi7686.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2409579..2410931 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7686.t1.exon1Gvermi7686.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2409579..2410931 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7686.t1.start1Gvermi7686.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2410929..2410931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7686.t1Gvermi7686.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2409579..2410931 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7686.t1 ID=Gvermi7686.t1|Name=Gvermi7686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=451bp
MWLMRNLTLEEGRSQYGPDFITYEELVLLHACANLDPRCDQGHFGPVFIV
FHRSMLLLFENSLIAIDPDIGAMPYWNVAFDASEGKFRDDPQNHIFSDSF
FGSFRGDPQQRFAVTDGLFPYFPIIKYNASRHGSKSNSNLRCLQEDWVRF
EPASICRRCCGKASCVCDAENDVFDTFLRNFDECSPYAVRDYEQFPLIDG
TRELLFTEKDFNTCTNSTLIRSFDQWQRCIEMERSSCFFPGIDVSEIPGD
DQIKIKTLAYLATEPTECSQQGFYFDTDGVLRRVNSHHSQVHVKLAGDIR
DPATSPNDPIFFSYHADVDRNHMTWMANTQYLEREWWKYPRDQKVPTYAR
ASFSGPYNIYHLMQCGLVKSTMFPQYEPYANAWIPGTLLDDIINSGYPMS
NLFGETCSTEPYTARNIIEMSTPSNTVYTYDTLEYLYDSCVAPDSRKCSA
*
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spliced messenger RNA

>Gvermi7686.t1 ID=Gvermi7686.t1|Name=Gvermi7686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at ScGOVlb_64:2409579..2410931- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCTCATGCGCAATCTCACTCTCGAGGAAGGCCGTAGTCAGTACGG
CCCTGATTTCATAACATACGAGGAGCTCGTTCTTCTGCATGCCTGTGCTA
ATTTGGACCCTCGCTGTGATCAAGGTCATTTTGGGCCTGTATTCATCGTC
TTTCATCGCTCAATGCTTCTCCTTTTTGAAAACTCCCTGATAGCGATCGA
TCCAGACATCGGAGCCATGCCATATTGGAATGTTGCTTTCGACGCTTCAG
AGGGAAAATTCCGTGATGATCCGCAAAATCACATATTTTCGGATTCGTTC
TTTGGTTCATTCCGAGGAGATCCGCAACAGCGTTTTGCGGTGACTGATGG
CCTTTTCCCTTACTTTCCGATCATTAAGTACAATGCTTCGCGGCATGGGT
CAAAGTCAAATTCTAACCTTCGCTGTTTGCAAGAAGATTGGGTGCGTTTT
GAGCCTGCGTCAATCTGCCGTCGGTGTTGCGGAAAGGCAAGTTGTGTGTG
TGACGCTGAAAATGACGTGTTTGACACATTTTTGCGCAACTTTGACGAGT
GCTCGCCGTACGCCGTCAGGGACTATGAGCAATTTCCGCTCATAGACGGC
ACACGAGAATTGCTGTTTACCGAAAAAGACTTCAACACTTGCACCAACTC
CACTCTTATTCGCTCTTTTGATCAATGGCAGAGGTGCATCGAGATGGAGC
GAAGCAGCTGCTTCTTTCCCGGGATAGATGTTTCAGAAATTCCAGGTGAT
GATCAAATCAAAATCAAGACGCTGGCGTATCTCGCCACGGAGCCTACTGA
ATGTTCTCAGCAAGGGTTTTACTTCGATACAGACGGCGTTCTGAGAAGAG
TCAATTCCCACCATTCACAAGTACATGTCAAGCTAGCCGGTGACATCAGG
GATCCGGCGACTTCGCCGAATGATCCCATTTTCTTTAGCTATCACGCTGA
TGTGGACCGCAACCACATGACGTGGATGGCCAACACTCAGTATCTTGAGA
GAGAGTGGTGGAAATACCCACGTGATCAGAAAGTGCCCACTTATGCAAGA
GCCTCCTTTTCGGGCCCGTACAACATCTACCACCTCATGCAATGCGGGCT
GGTGAAGAGTACCATGTTTCCGCAGTATGAGCCGTACGCAAACGCCTGGA
TTCCCGGCACTCTGCTCGATGACATCATCAACTCCGGATATCCAATGTCC
AACCTCTTTGGCGAAACGTGCAGCACTGAGCCTTATACCGCTAGAAACAT
CATTGAGATGAGTACGCCATCAAACACCGTTTACACGTACGACACTCTAG
AATACCTGTACGACTCCTGCGTCGCCCCTGATTCGCGGAAATGCAGCGCC
TGA
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protein sequence of Gvermi7686.t1

>Gvermi7686.t1 ID=Gvermi7686.t1|Name=Gvermi7686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=451bp
MWLMRNLTLEEGRSQYGPDFITYEELVLLHACANLDPRCDQGHFGPVFIV
FHRSMLLLFENSLIAIDPDIGAMPYWNVAFDASEGKFRDDPQNHIFSDSF
FGSFRGDPQQRFAVTDGLFPYFPIIKYNASRHGSKSNSNLRCLQEDWVRF
EPASICRRCCGKASCVCDAENDVFDTFLRNFDECSPYAVRDYEQFPLIDG
TRELLFTEKDFNTCTNSTLIRSFDQWQRCIEMERSSCFFPGIDVSEIPGD
DQIKIKTLAYLATEPTECSQQGFYFDTDGVLRRVNSHHSQVHVKLAGDIR
DPATSPNDPIFFSYHADVDRNHMTWMANTQYLEREWWKYPRDQKVPTYAR
ASFSGPYNIYHLMQCGLVKSTMFPQYEPYANAWIPGTLLDDIINSGYPMS
NLFGETCSTEPYTARNIIEMSTPSNTVYTYDTLEYLYDSCVAPDSRKCSA
*
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mRNA from alignment at ScGOVlb_64:2409579..2410931-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7686.t1 ID=Gvermi7686.t1|Name=Gvermi7686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at ScGOVlb_64:2409579..2410931- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGCTCATGCGCAATCTCACTCTCGAGGAAGGCCGTAGTCAGTACGG
CCCTGATTTCATAACATACGAGGAGCTCGTTCTTCTGCATGCCTGTGCTA
ATTTGGACCCTCGCTGTGATCAAGGTCATTTTGGGCCTGTATTCATCGTC
TTTCATCGCTCAATGCTTCTCCTTTTTGAAAACTCCCTGATAGCGATCGA
TCCAGACATCGGAGCCATGCCATATTGGAATGTTGCTTTCGACGCTTCAG
AGGGAAAATTCCGTGATGATCCGCAAAATCACATATTTTCGGATTCGTTC
TTTGGTTCATTCCGAGGAGATCCGCAACAGCGTTTTGCGGTGACTGATGG
CCTTTTCCCTTACTTTCCGATCATTAAGTACAATGCTTCGCGGCATGGGT
CAAAGTCAAATTCTAACCTTCGCTGTTTGCAAGAAGATTGGGTGCGTTTT
GAGCCTGCGTCAATCTGCCGTCGGTGTTGCGGAAAGGCAAGTTGTGTGTG
TGACGCTGAAAATGACGTGTTTGACACATTTTTGCGCAACTTTGACGAGT
GCTCGCCGTACGCCGTCAGGGACTATGAGCAATTTCCGCTCATAGACGGC
ACACGAGAATTGCTGTTTACCGAAAAAGACTTCAACACTTGCACCAACTC
CACTCTTATTCGCTCTTTTGATCAATGGCAGAGGTGCATCGAGATGGAGC
GAAGCAGCTGCTTCTTTCCCGGGATAGATGTTTCAGAAATTCCAGGTGAT
GATCAAATCAAAATCAAGACGCTGGCGTATCTCGCCACGGAGCCTACTGA
ATGTTCTCAGCAAGGGTTTTACTTCGATACAGACGGCGTTCTGAGAAGAG
TCAATTCCCACCATTCACAAGTACATGTCAAGCTAGCCGGTGACATCAGG
GATCCGGCGACTTCGCCGAATGATCCCATTTTCTTTAGCTATCACGCTGA
TGTGGACCGCAACCACATGACGTGGATGGCCAACACTCAGTATCTTGAGA
GAGAGTGGTGGAAATACCCACGTGATCAGAAAGTGCCCACTTATGCAAGA
GCCTCCTTTTCGGGCCCGTACAACATCTACCACCTCATGCAATGCGGGCT
GGTGAAGAGTACCATGTTTCCGCAGTATGAGCCGTACGCAAACGCCTGGA
TTCCCGGCACTCTGCTCGATGACATCATCAACTCCGGATATCCAATGTCC
AACCTCTTTGGCGAAACGTGCAGCACTGAGCCTTATACCGCTAGAAACAT
CATTGAGATGAGTACGCCATCAAACACCGTTTACACGTACGACACTCTAG
AATACCTGTACGACTCCTGCGTCGCCCCTGATTCGCGGAAATGCAGCGCC
TGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:2409579..2410931-

>Gvermi7686.t1 ID=Gvermi7686.t1|Name=Gvermi7686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1353bp|location=Sequence derived from alignment at ScGOVlb_64:2409579..2410931- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGCTCATGCGCAATCTCACTCTCGAGGAAGGCCGTAGTCAGTACGG
CCCTGATTTCATAACATACGAGGAGCTCGTTCTTCTGCATGCCTGTGCTA
ATTTGGACCCTCGCTGTGATCAAGGTCATTTTGGGCCTGTATTCATCGTC
TTTCATCGCTCAATGCTTCTCCTTTTTGAAAACTCCCTGATAGCGATCGA
TCCAGACATCGGAGCCATGCCATATTGGAATGTTGCTTTCGACGCTTCAG
AGGGAAAATTCCGTGATGATCCGCAAAATCACATATTTTCGGATTCGTTC
TTTGGTTCATTCCGAGGAGATCCGCAACAGCGTTTTGCGGTGACTGATGG
CCTTTTCCCTTACTTTCCGATCATTAAGTACAATGCTTCGCGGCATGGGT
CAAAGTCAAATTCTAACCTTCGCTGTTTGCAAGAAGATTGGGTGCGTTTT
GAGCCTGCGTCAATCTGCCGTCGGTGTTGCGGAAAGGCAAGTTGTGTGTG
TGACGCTGAAAATGACGTGTTTGACACATTTTTGCGCAACTTTGACGAGT
GCTCGCCGTACGCCGTCAGGGACTATGAGCAATTTCCGCTCATAGACGGC
ACACGAGAATTGCTGTTTACCGAAAAAGACTTCAACACTTGCACCAACTC
CACTCTTATTCGCTCTTTTGATCAATGGCAGAGGTGCATCGAGATGGAGC
GAAGCAGCTGCTTCTTTCCCGGGATAGATGTTTCAGAAATTCCAGGTGAT
GATCAAATCAAAATCAAGACGCTGGCGTATCTCGCCACGGAGCCTACTGA
ATGTTCTCAGCAAGGGTTTTACTTCGATACAGACGGCGTTCTGAGAAGAG
TCAATTCCCACCATTCACAAGTACATGTCAAGCTAGCCGGTGACATCAGG
GATCCGGCGACTTCGCCGAATGATCCCATTTTCTTTAGCTATCACGCTGA
TGTGGACCGCAACCACATGACGTGGATGGCCAACACTCAGTATCTTGAGA
GAGAGTGGTGGAAATACCCACGTGATCAGAAAGTGCCCACTTATGCAAGA
GCCTCCTTTTCGGGCCCGTACAACATCTACCACCTCATGCAATGCGGGCT
GGTGAAGAGTACCATGTTTCCGCAGTATGAGCCGTACGCAAACGCCTGGA
TTCCCGGCACTCTGCTCGATGACATCATCAACTCCGGATATCCAATGTCC
AACCTCTTTGGCGAAACGTGCAGCACTGAGCCTTATACCGCTAGAAACAT
CATTGAGATGAGTACGCCATCAAACACCGTTTACACGTACGACACTCTAG
AATACCTGTACGACTCCTGCGTCGCCCCTGATTCGCGGAAATGCAGCGCC
TGA
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