Gvermi7682.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7682.t1
Unique NameGvermi7682.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:2243467..2244288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7682Gvermi7682Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 2243467..2244288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7682.t1Gvermi7682.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 2243467..2244288 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7682.t1.start1Gvermi7682.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 2243467..2243469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7682.t1.CDS1Gvermi7682.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2243467..2243660 +
Gvermi7682.t1.CDS2Gvermi7682.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 2243748..2244288 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7682.t1.exon1Gvermi7682.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2243467..2243660 +
Gvermi7682.t1.exon2Gvermi7682.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 2243748..2244288 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7682.t1.intron1Gvermi7682.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 2243661..2243747 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7682.t1.stop1Gvermi7682.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 2244286..2244288 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7682.t1 ID=Gvermi7682.t1|Name=Gvermi7682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=245bp
MLTSLCFAFWGLLIERLRATLVQESIKSKFETVADLLNCNVKPSEICILR
GGALEIFWQNSIAVDECHFQNPPKLYDSYNSLFKAVANRECKYAVMIETA
LMAATRMKYCRRFVIVGKPLFNNGLSMLLPKGSDMTDKMSQATLDLMGNQ
TQTYLDKYMSNLPRCRVDSGQTLSFNKLHGFFVLVYIVVGTLLLAMIFIP
QQTSKGIECQESPASALSNEVKQVSEECSKHSPCSETNTAEDTI*
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spliced messenger RNA

>Gvermi7682.t1 ID=Gvermi7682.t1|Name=Gvermi7682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=735bp|location=Sequence derived from alignment at ScGOVlb_64:2243467..2244288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAACCTCACTTTGTTTTGCTTTCTGGGGGCTTCTTATCGAGCGACT
CAGGGCCACTTTGGTACAAGAGTCCATCAAGTCAAAATTTGAAACGGTGG
CAGATCTTCTAAATTGTAATGTGAAACCCTCGGAAATATGCATCCTTAGG
GGAGGCGCTCTCGAGATTTTTTGGCAGAATTCTATCGCAGTTGATGAATG
CCATTTTCAGAATCCGCCAAAACTTTACGATTCTTACAACTCATTGTTTA
AGGCTGTTGCTAACCGAGAATGCAAGTATGCCGTCATGATCGAGACGGCA
TTAATGGCTGCAACTCGTATGAAGTATTGCAGACGCTTTGTGATTGTTGG
AAAGCCATTATTTAACAACGGACTTTCAATGCTTCTTCCAAAGGGAAGTG
ACATGACCGATAAAATGAGTCAAGCGACTCTCGATTTGATGGGAAATCAG
ACGCAAACATACCTTGACAAATATATGAGCAATCTTCCAAGGTGTAGAGT
TGATTCAGGCCAGACGCTAAGTTTCAACAAACTGCATGGTTTTTTTGTAT
TGGTGTATATAGTCGTAGGGACTTTGCTCTTGGCAATGATATTTATTCCG
CAACAGACTTCGAAAGGAATTGAATGTCAAGAATCTCCTGCCTCAGCTTT
ATCGAACGAAGTCAAGCAGGTTTCTGAGGAATGTTCAAAGCACTCTCCAT
GTTCTGAAACAAATACGGCCGAGGATACTATATGA
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protein sequence of Gvermi7682.t1

>Gvermi7682.t1 ID=Gvermi7682.t1|Name=Gvermi7682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=245bp
MLTSLCFAFWGLLIERLRATLVQESIKSKFETVADLLNCNVKPSEICILR
GGALEIFWQNSIAVDECHFQNPPKLYDSYNSLFKAVANRECKYAVMIETA
LMAATRMKYCRRFVIVGKPLFNNGLSMLLPKGSDMTDKMSQATLDLMGNQ
TQTYLDKYMSNLPRCRVDSGQTLSFNKLHGFFVLVYIVVGTLLLAMIFIP
QQTSKGIECQESPASALSNEVKQVSEECSKHSPCSETNTAEDTI*
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mRNA from alignment at ScGOVlb_64:2243467..2244288+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7682.t1 ID=Gvermi7682.t1|Name=Gvermi7682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=822bp|location=Sequence derived from alignment at ScGOVlb_64:2243467..2244288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTAACCTCACTTTGTTTTGCTTTCTGGGGGCTTCTTATCGAGCGACT
CAGGGCCACTTTGGTACAAGAGTCCATCAAGTCAAAATTTGAAACGGTGG
CAGATCTTCTAAATTGTAATGTGAAACCCTCGGAAATATGCATCCTTAGG
GGAGGCGCTCTCGAGATTTTTTGGCAGAATTCTATCGCAGTTGAGTAAGT
CACACTAATTTCTCTGAATTGATGTCTCATAGTTAAATATTCCATCTGAC
ATCTCTTCTGTCTGGCCCTTTTCCCAACAAGTGAATGCCATTTTCAGAAT
CCGCCAAAACTTTACGATTCTTACAACTCATTGTTTAAGGCTGTTGCTAA
CCGAGAATGCAAGTATGCCGTCATGATCGAGACGGCATTAATGGCTGCAA
CTCGTATGAAGTATTGCAGACGCTTTGTGATTGTTGGAAAGCCATTATTT
AACAACGGACTTTCAATGCTTCTTCCAAAGGGAAGTGACATGACCGATAA
AATGAGTCAAGCGACTCTCGATTTGATGGGAAATCAGACGCAAACATACC
TTGACAAATATATGAGCAATCTTCCAAGGTGTAGAGTTGATTCAGGCCAG
ACGCTAAGTTTCAACAAACTGCATGGTTTTTTTGTATTGGTGTATATAGT
CGTAGGGACTTTGCTCTTGGCAATGATATTTATTCCGCAACAGACTTCGA
AAGGAATTGAATGTCAAGAATCTCCTGCCTCAGCTTTATCGAACGAAGTC
AAGCAGGTTTCTGAGGAATGTTCAAAGCACTCTCCATGTTCTGAAACAAA
TACGGCCGAGGATACTATATGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:2243467..2244288+

>Gvermi7682.t1 ID=Gvermi7682.t1|Name=Gvermi7682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=735bp|location=Sequence derived from alignment at ScGOVlb_64:2243467..2244288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTAACCTCACTTTGTTTTGCTTTCTGGGGGCTTCTTATCGAGCGACT
CAGGGCCACTTTGGTACAAGAGTCCATCAAGTCAAAATTTGAAACGGTGG
CAGATCTTCTAAATTGTAATGTGAAACCCTCGGAAATATGCATCCTTAGG
GGAGGCGCTCTCGAGATTTTTTGGCAGAATTCTATCGCAGTTGATGAATG
CCATTTTCAGAATCCGCCAAAACTTTACGATTCTTACAACTCATTGTTTA
AGGCTGTTGCTAACCGAGAATGCAAGTATGCCGTCATGATCGAGACGGCA
TTAATGGCTGCAACTCGTATGAAGTATTGCAGACGCTTTGTGATTGTTGG
AAAGCCATTATTTAACAACGGACTTTCAATGCTTCTTCCAAAGGGAAGTG
ACATGACCGATAAAATGAGTCAAGCGACTCTCGATTTGATGGGAAATCAG
ACGCAAACATACCTTGACAAATATATGAGCAATCTTCCAAGGTGTAGAGT
TGATTCAGGCCAGACGCTAAGTTTCAACAAACTGCATGGTTTTTTTGTAT
TGGTGTATATAGTCGTAGGGACTTTGCTCTTGGCAATGATATTTATTCCG
CAACAGACTTCGAAAGGAATTGAATGTCAAGAATCTCCTGCCTCAGCTTT
ATCGAACGAAGTCAAGCAGGTTTCTGAGGAATGTTCAAAGCACTCTCCAT
GTTCTGAAACAAATACGGCCGAGGATACTATATGA
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