Gvermi7677.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7677.t1
Unique NameGvermi7677.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length584
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1927089..1928928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog68199.JNZO01000014_gene3725
PFAMsART,Macro
Max annot lvl201174|Actinobacteria
Evalue1.61e-87
EggNOG OGsCOG0692@1|root,COG0692@2|Bacteria,2GK8W@201174|Actinobacteria
DescriptionNAD:arginine ADP-ribosyltransferase
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7677Gvermi7677Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1927089..1928928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7677.t1Gvermi7677.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1927089..1928928 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7677.t1.start1Gvermi7677.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1927089..1927091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7677.t1.CDS1Gvermi7677.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1927089..1927538 +
Gvermi7677.t1.CDS2Gvermi7677.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1927627..1928928 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7677.t1.exon1Gvermi7677.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1927089..1927538 +
Gvermi7677.t1.exon2Gvermi7677.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1927627..1928928 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7677.t1.intron1Gvermi7677.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1927539..1927626 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7677.t1.stop1Gvermi7677.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1928926..1928928 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7677.t1 ID=Gvermi7677.t1|Name=Gvermi7677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=584bp
MSWEYEGALPISNAQISWYPFSEEISKKLSVLFQRYHSFEEKEHTVIIGL
NETLYTADIKEFKITHLQRETASNIRMANQSLSIKCMFNGGYGYKWEETL
TTMLGHMEKAACFIGPQRDKSIVPLRELTFQALKPLNPEDWRVIVVAQKP
SGSIDSAAGLAIYDPTLMNWDDKKLGTMTSMRCFFKAAAMTKYEIDPKVN
LNDLRSLVSAKEVVSPQELFQSMISQGVLFLNASFTNGGSYSISDHTAFW
LPVLKSIIGKILHAKTKLQNTDERLGLVLCWWGGDMKNTKVHFKKVLDRF
PQIPLRQIHWYSPAARGDLFCKKPLHLNEVNKHLANLEMRTIDWLPIKNQ
RKERGLVPAALRDFILKTRSWHAVHLGHLRGIFEFEKDVQPITGVRSTTP
EKLKLSHKTLQNTNVTTGIDRQNAGSILMLCSDEMNAFNEYRRLHGYLNS
SMRMKTCYKYYPFLSLFLKAHDKLRPASENLQLYRGIRINLRDTYKVNQI
VTWWGISSCSSDIAISRRYARPSGTIFFISARSAVSITAYSGISILKEYL
LAPGTRLQVMKIEQRNKFLHIYVREIPGERLVR*
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spliced messenger RNA

>Gvermi7677.t1 ID=Gvermi7677.t1|Name=Gvermi7677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1752bp|location=Sequence derived from alignment at ScGOVlb_64:1927089..1928928+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTGGGAATATGAAGGAGCACTACCCATTTCAAATGCACAGATTTC
GTGGTATCCTTTTTCGGAAGAGATTTCAAAGAAGCTCAGTGTTTTGTTTC
AGAGGTATCATTCATTTGAAGAAAAAGAACATACAGTTATAATCGGTCTC
AATGAAACTTTGTACACAGCTGACATAAAGGAATTTAAGATTACGCATCT
TCAAAGAGAAACTGCGTCAAATATTCGCATGGCTAACCAGTCTTTATCCA
TCAAATGCATGTTTAATGGAGGATATGGGTACAAATGGGAAGAAACTCTT
ACGACCATGCTCGGCCATATGGAAAAAGCTGCATGTTTCATAGGTCCTCA
AAGGGACAAGAGTATTGTTCCATTGAGAGAACTTACTTTTCAAGCTCTCA
AGCCATTGAATCCAGAAGATTGGAGAGTCATCGTAGTAGCCCAGAAACCT
TCTGGATCTATAGATTCCGCTGCAGGTTTGGCCATTTACGACCCGACATT
AATGAACTGGGACGACAAAAAACTTGGGACAATGACCTCTATGCGTTGCT
TCTTCAAAGCAGCTGCGATGACAAAGTATGAAATTGATCCGAAAGTTAAT
CTAAATGACTTGCGATCTTTAGTATCCGCAAAAGAAGTTGTATCCCCACA
AGAATTGTTTCAGAGCATGATTTCTCAGGGGGTTCTTTTTCTCAACGCTT
CCTTTACCAATGGCGGTTCCTACTCCATTTCAGATCACACTGCGTTCTGG
CTTCCTGTACTAAAATCTATCATAGGAAAAATATTACATGCAAAAACCAA
ACTGCAGAATACTGACGAGCGCTTAGGTTTGGTGCTCTGCTGGTGGGGTG
GCGATATGAAAAACACAAAAGTTCACTTTAAAAAGGTTTTGGATAGGTTT
CCGCAGATTCCATTGCGTCAAATACATTGGTACAGCCCTGCCGCTCGTGG
AGACTTGTTCTGCAAGAAACCGCTGCATTTGAACGAGGTTAATAAACATT
TGGCAAATCTAGAAATGAGAACAATAGATTGGCTTCCCATCAAGAATCAG
AGAAAAGAGAGAGGTCTAGTGCCGGCAGCTTTGAGAGATTTTATCTTAAA
AACAAGAAGCTGGCATGCTGTGCATCTTGGACATTTGCGTGGAATATTTG
AGTTTGAAAAGGATGTTCAACCAATCACCGGAGTAAGAAGCACAACTCCG
GAAAAGTTAAAGTTGTCTCATAAAACACTCCAGAATACGAATGTTACTAC
AGGAATAGATCGACAGAATGCCGGAAGCATCTTGATGTTATGCAGTGACG
AGATGAATGCTTTCAATGAGTACAGACGTTTACATGGGTATTTGAATTCT
AGTATGAGGATGAAAACTTGTTACAAATACTATCCATTTCTGTCTCTCTT
TCTGAAAGCTCATGACAAGCTCCGACCCGCTTCCGAGAATCTTCAACTAT
ATCGCGGAATACGCATTAATCTTCGCGATACATATAAGGTTAACCAAATC
GTAACTTGGTGGGGCATCAGTAGTTGCTCCTCGGACATTGCAATCTCACG
AAGATATGCTCGACCATCTGGTACTATTTTTTTTATATCTGCGAGAAGTG
CTGTGTCTATTACAGCGTACAGTGGAATTTCAATTCTGAAAGAATACTTA
CTTGCCCCTGGAACTCGGCTGCAGGTGATGAAAATAGAGCAGAGGAACAA
ATTTCTGCACATCTATGTACGCGAAATCCCTGGAGAAAGATTAGTGCGTT
AA
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protein sequence of Gvermi7677.t1

>Gvermi7677.t1 ID=Gvermi7677.t1|Name=Gvermi7677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=584bp
MSWEYEGALPISNAQISWYPFSEEISKKLSVLFQRYHSFEEKEHTVIIGL
NETLYTADIKEFKITHLQRETASNIRMANQSLSIKCMFNGGYGYKWEETL
TTMLGHMEKAACFIGPQRDKSIVPLRELTFQALKPLNPEDWRVIVVAQKP
SGSIDSAAGLAIYDPTLMNWDDKKLGTMTSMRCFFKAAAMTKYEIDPKVN
LNDLRSLVSAKEVVSPQELFQSMISQGVLFLNASFTNGGSYSISDHTAFW
LPVLKSIIGKILHAKTKLQNTDERLGLVLCWWGGDMKNTKVHFKKVLDRF
PQIPLRQIHWYSPAARGDLFCKKPLHLNEVNKHLANLEMRTIDWLPIKNQ
RKERGLVPAALRDFILKTRSWHAVHLGHLRGIFEFEKDVQPITGVRSTTP
EKLKLSHKTLQNTNVTTGIDRQNAGSILMLCSDEMNAFNEYRRLHGYLNS
SMRMKTCYKYYPFLSLFLKAHDKLRPASENLQLYRGIRINLRDTYKVNQI
VTWWGISSCSSDIAISRRYARPSGTIFFISARSAVSITAYSGISILKEYL
LAPGTRLQVMKIEQRNKFLHIYVREIPGERLVR*
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mRNA from alignment at ScGOVlb_64:1927089..1928928+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7677.t1 ID=Gvermi7677.t1|Name=Gvermi7677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1840bp|location=Sequence derived from alignment at ScGOVlb_64:1927089..1928928+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTTGGGAATATGAAGGAGCACTACCCATTTCAAATGCACAGATTTC
GTGGTATCCTTTTTCGGAAGAGATTTCAAAGAAGCTCAGTGTTTTGTTTC
AGAGGTATCATTCATTTGAAGAAAAAGAACATACAGTTATAATCGGTCTC
AATGAAACTTTGTACACAGCTGACATAAAGGAATTTAAGATTACGCATCT
TCAAAGAGAAACTGCGTCAAATATTCGCATGGCTAACCAGTCTTTATCCA
TCAAATGCATGTTTAATGGAGGATATGGGTACAAATGGGAAGAAACTCTT
ACGACCATGCTCGGCCATATGGAAAAAGCTGCATGTTTCATAGGTCCTCA
AAGGGACAAGAGTATTGTTCCATTGAGAGAACTTACTTTTCAAGCTCTCA
AGCCATTGAATCCAGAAGATTGGAGAGTCATCGTAGTAGCCCAGAAACCT
GTTCGTTATTTTCTCCGTTTTTTTTGGGACCTGCGTTCTGGATAACACTA
ACTTGTCTCATAATTCTTATGATTTTCATAAACAAAAGTCTGGATCTATA
GATTCCGCTGCAGGTTTGGCCATTTACGACCCGACATTAATGAACTGGGA
CGACAAAAAACTTGGGACAATGACCTCTATGCGTTGCTTCTTCAAAGCAG
CTGCGATGACAAAGTATGAAATTGATCCGAAAGTTAATCTAAATGACTTG
CGATCTTTAGTATCCGCAAAAGAAGTTGTATCCCCACAAGAATTGTTTCA
GAGCATGATTTCTCAGGGGGTTCTTTTTCTCAACGCTTCCTTTACCAATG
GCGGTTCCTACTCCATTTCAGATCACACTGCGTTCTGGCTTCCTGTACTA
AAATCTATCATAGGAAAAATATTACATGCAAAAACCAAACTGCAGAATAC
TGACGAGCGCTTAGGTTTGGTGCTCTGCTGGTGGGGTGGCGATATGAAAA
ACACAAAAGTTCACTTTAAAAAGGTTTTGGATAGGTTTCCGCAGATTCCA
TTGCGTCAAATACATTGGTACAGCCCTGCCGCTCGTGGAGACTTGTTCTG
CAAGAAACCGCTGCATTTGAACGAGGTTAATAAACATTTGGCAAATCTAG
AAATGAGAACAATAGATTGGCTTCCCATCAAGAATCAGAGAAAAGAGAGA
GGTCTAGTGCCGGCAGCTTTGAGAGATTTTATCTTAAAAACAAGAAGCTG
GCATGCTGTGCATCTTGGACATTTGCGTGGAATATTTGAGTTTGAAAAGG
ATGTTCAACCAATCACCGGAGTAAGAAGCACAACTCCGGAAAAGTTAAAG
TTGTCTCATAAAACACTCCAGAATACGAATGTTACTACAGGAATAGATCG
ACAGAATGCCGGAAGCATCTTGATGTTATGCAGTGACGAGATGAATGCTT
TCAATGAGTACAGACGTTTACATGGGTATTTGAATTCTAGTATGAGGATG
AAAACTTGTTACAAATACTATCCATTTCTGTCTCTCTTTCTGAAAGCTCA
TGACAAGCTCCGACCCGCTTCCGAGAATCTTCAACTATATCGCGGAATAC
GCATTAATCTTCGCGATACATATAAGGTTAACCAAATCGTAACTTGGTGG
GGCATCAGTAGTTGCTCCTCGGACATTGCAATCTCACGAAGATATGCTCG
ACCATCTGGTACTATTTTTTTTATATCTGCGAGAAGTGCTGTGTCTATTA
CAGCGTACAGTGGAATTTCAATTCTGAAAGAATACTTACTTGCCCCTGGA
ACTCGGCTGCAGGTGATGAAAATAGAGCAGAGGAACAAATTTCTGCACAT
CTATGTACGCGAAATCCCTGGAGAAAGATTAGTGCGTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1927089..1928928+

>Gvermi7677.t1 ID=Gvermi7677.t1|Name=Gvermi7677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1752bp|location=Sequence derived from alignment at ScGOVlb_64:1927089..1928928+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTTGGGAATATGAAGGAGCACTACCCATTTCAAATGCACAGATTTC
GTGGTATCCTTTTTCGGAAGAGATTTCAAAGAAGCTCAGTGTTTTGTTTC
AGAGGTATCATTCATTTGAAGAAAAAGAACATACAGTTATAATCGGTCTC
AATGAAACTTTGTACACAGCTGACATAAAGGAATTTAAGATTACGCATCT
TCAAAGAGAAACTGCGTCAAATATTCGCATGGCTAACCAGTCTTTATCCA
TCAAATGCATGTTTAATGGAGGATATGGGTACAAATGGGAAGAAACTCTT
ACGACCATGCTCGGCCATATGGAAAAAGCTGCATGTTTCATAGGTCCTCA
AAGGGACAAGAGTATTGTTCCATTGAGAGAACTTACTTTTCAAGCTCTCA
AGCCATTGAATCCAGAAGATTGGAGAGTCATCGTAGTAGCCCAGAAACCT
TCTGGATCTATAGATTCCGCTGCAGGTTTGGCCATTTACGACCCGACATT
AATGAACTGGGACGACAAAAAACTTGGGACAATGACCTCTATGCGTTGCT
TCTTCAAAGCAGCTGCGATGACAAAGTATGAAATTGATCCGAAAGTTAAT
CTAAATGACTTGCGATCTTTAGTATCCGCAAAAGAAGTTGTATCCCCACA
AGAATTGTTTCAGAGCATGATTTCTCAGGGGGTTCTTTTTCTCAACGCTT
CCTTTACCAATGGCGGTTCCTACTCCATTTCAGATCACACTGCGTTCTGG
CTTCCTGTACTAAAATCTATCATAGGAAAAATATTACATGCAAAAACCAA
ACTGCAGAATACTGACGAGCGCTTAGGTTTGGTGCTCTGCTGGTGGGGTG
GCGATATGAAAAACACAAAAGTTCACTTTAAAAAGGTTTTGGATAGGTTT
CCGCAGATTCCATTGCGTCAAATACATTGGTACAGCCCTGCCGCTCGTGG
AGACTTGTTCTGCAAGAAACCGCTGCATTTGAACGAGGTTAATAAACATT
TGGCAAATCTAGAAATGAGAACAATAGATTGGCTTCCCATCAAGAATCAG
AGAAAAGAGAGAGGTCTAGTGCCGGCAGCTTTGAGAGATTTTATCTTAAA
AACAAGAAGCTGGCATGCTGTGCATCTTGGACATTTGCGTGGAATATTTG
AGTTTGAAAAGGATGTTCAACCAATCACCGGAGTAAGAAGCACAACTCCG
GAAAAGTTAAAGTTGTCTCATAAAACACTCCAGAATACGAATGTTACTAC
AGGAATAGATCGACAGAATGCCGGAAGCATCTTGATGTTATGCAGTGACG
AGATGAATGCTTTCAATGAGTACAGACGTTTACATGGGTATTTGAATTCT
AGTATGAGGATGAAAACTTGTTACAAATACTATCCATTTCTGTCTCTCTT
TCTGAAAGCTCATGACAAGCTCCGACCCGCTTCCGAGAATCTTCAACTAT
ATCGCGGAATACGCATTAATCTTCGCGATACATATAAGGTTAACCAAATC
GTAACTTGGTGGGGCATCAGTAGTTGCTCCTCGGACATTGCAATCTCACG
AAGATATGCTCGACCATCTGGTACTATTTTTTTTATATCTGCGAGAAGTG
CTGTGTCTATTACAGCGTACAGTGGAATTTCAATTCTGAAAGAATACTTA
CTTGCCCCTGGAACTCGGCTGCAGGTGATGAAAATAGAGCAGAGGAACAA
ATTTCTGCACATCTATGTACGCGAAATCCCTGGAGAAAGATTAGTGCGTT
AA
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