Gvermi7675.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7675.t1
Unique NameGvermi7675.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1871402..1872541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1051632.TPY_2934
Max annot lvl186801|Clostridia
Evalue6.47e-43
EggNOG OGsCOG2357@1|root,COG2357@2|Bacteria,1UIQY@1239|Firmicutes,25F78@186801|Clostridia
DescriptionGlycosyl hydrolase family 53
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7675Gvermi7675Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1871402..1872541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7675.t1Gvermi7675.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1871402..1872541 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7675.t1.stop1Gvermi7675.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1871402..1871404 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7675.t1.CDS1Gvermi7675.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1871402..1872070 -
Gvermi7675.t1.CDS2Gvermi7675.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1872188..1872541 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7675.t1.exon1Gvermi7675.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1871402..1872070 -
Gvermi7675.t1.exon2Gvermi7675.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1872188..1872541 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7675.t1.intron1Gvermi7675.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1872071..1872187 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7675.t1.start1Gvermi7675.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1872539..1872541 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7675.t1 ID=Gvermi7675.t1|Name=Gvermi7675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=341bp
MHRPASLTLCALLLAAAAATVAANPALAVRGAAFSTGHDPTAYRYGYVPA
SLRQLRRTGSNYVQISVYARMRSLNAANATQQTDDASIRYIVRAAHRAGF
RVFLKPVIEIAGDTWRGFLPGTAAWFQNVYRPFIAHMATIAAQERVDIFS
VGSEYRNSEVQVRQWSSVIDLVRSVYRGPITYIANHDSYQRFRLWHRLDM
ISISAYFQLLPGERGPSPDMAATSALWRRKAAEIRAWRLARGLAAKKLLI
AEVGVQSKGDGVVYRVPWNWSVRAPVNFHEQEKMYAGICDAFSDPAWVAG
ILFWNWELQPYAGTSFPTSADYTPQNKPAEQVMRRCFARA*
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spliced messenger RNA

>Gvermi7675.t1 ID=Gvermi7675.t1|Name=Gvermi7675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at ScGOVlb_64:1871402..1872541- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCGCCCCGCCTCGCTCACCCTCTGCGCCCTGCTGCTGGCCGCCGC
CGCCGCCACCGTCGCCGCCAACCCCGCCCTGGCCGTGCGCGGCGCCGCCT
TCTCCACGGGCCACGACCCAACCGCCTACCGCTACGGCTACGTCCCGGCC
TCGCTGCGCCAGCTGCGCCGCACCGGGTCCAACTACGTCCAGATCTCCGT
CTACGCCCGCATGCGCTCCCTCAACGCCGCCAACGCCACCCAGCAGACCG
ACGACGCCTCCATCCGCTACATTGTGCGCGCCGCCCATCGCGCCGGCTTC
CGCGTCTTCCTCAAGCCTGTCATCGAGATCGCCGGCGACACTTGGCGAGG
CTTTCTGCCCGGCACCGCTGCCTGGTTCCAAAACGTGTACCGCCCGTTCA
TCGCCCACATGGCCACCATCGCCGCGCAGGAGCGCGTTGACATCTTCTCG
GTCGGCTCCGAGTACCGCAACAGCGAGGTGCAGGTGCGCCAGTGGAGCTC
CGTCATCGACCTCGTGCGCTCCGTGTACCGCGGCCCCATCACGTACATCG
CCAACCACGACTCGTACCAACGCTTCCGCCTGTGGCACCGCCTGGACATG
ATCTCCATCTCGGCCTACTTCCAGCTGCTCCCGGGCGAGCGCGGGCCGTC
GCCGGACATGGCGGCCACCTCGGCGCTGTGGCGCCGCAAGGCCGCCGAGA
TCCGCGCCTGGCGCCTGGCGCGCGGCCTCGCCGCCAAGAAGCTGCTCATC
GCCGAGGTCGGCGTGCAGAGCAAGGGCGACGGCGTCGTGTACCGCGTGCC
GTGGAACTGGAGCGTGCGCGCCCCCGTCAACTTTCACGAGCAGGAGAAGA
TGTACGCGGGCATCTGCGACGCCTTCAGCGACCCTGCCTGGGTCGCCGGC
ATCCTCTTCTGGAACTGGGAGCTGCAGCCGTACGCCGGCACCTCGTTCCC
GACCTCCGCCGACTACACGCCGCAGAACAAGCCCGCCGAGCAGGTCATGC
GCCGCTGCTTTGCGCGCGCCTGA
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protein sequence of Gvermi7675.t1

>Gvermi7675.t1 ID=Gvermi7675.t1|Name=Gvermi7675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=341bp
MHRPASLTLCALLLAAAAATVAANPALAVRGAAFSTGHDPTAYRYGYVPA
SLRQLRRTGSNYVQISVYARMRSLNAANATQQTDDASIRYIVRAAHRAGF
RVFLKPVIEIAGDTWRGFLPGTAAWFQNVYRPFIAHMATIAAQERVDIFS
VGSEYRNSEVQVRQWSSVIDLVRSVYRGPITYIANHDSYQRFRLWHRLDM
ISISAYFQLLPGERGPSPDMAATSALWRRKAAEIRAWRLARGLAAKKLLI
AEVGVQSKGDGVVYRVPWNWSVRAPVNFHEQEKMYAGICDAFSDPAWVAG
ILFWNWELQPYAGTSFPTSADYTPQNKPAEQVMRRCFARA*
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mRNA from alignment at ScGOVlb_64:1871402..1872541-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7675.t1 ID=Gvermi7675.t1|Name=Gvermi7675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at ScGOVlb_64:1871402..1872541- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACCGCCCCGCCTCGCTCACCCTCTGCGCCCTGCTGCTGGCCGCCGC
CGCCGCCACCGTCGCCGCCAACCCCGCCCTGGCCGTGCGCGGCGCCGCCT
TCTCCACGGGCCACGACCCAACCGCCTACCGCTACGGCTACGTCCCGGCC
TCGCTGCGCCAGCTGCGCCGCACCGGGTCCAACTACGTCCAGATCTCCGT
CTACGCCCGCATGCGCTCCCTCAACGCCGCCAACGCCACCCAGCAGACCG
ACGACGCCTCCATCCGCTACATTGTGCGCGCCGCCCATCGCGCCGGCTTC
CGCGTCTTCCTCAAGCCTGTCATCGAGATCGCCGGCGACACTTGGCGAGG
CTTTGTGCGTTGCCCTTTCTTTTCCCCCGCCGCGCGCCCCGCACCGCCAC
GCGTCCCCGAGCCGAGCTGACTCCCTTGTGTGTGTTTTTGACCTCCTGTT
ACTCTGTCGCGCGCCGCGCAGCTGCCCGGCACCGCTGCCTGGTTCCAAAA
CGTGTACCGCCCGTTCATCGCCCACATGGCCACCATCGCCGCGCAGGAGC
GCGTTGACATCTTCTCGGTCGGCTCCGAGTACCGCAACAGCGAGGTGCAG
GTGCGCCAGTGGAGCTCCGTCATCGACCTCGTGCGCTCCGTGTACCGCGG
CCCCATCACGTACATCGCCAACCACGACTCGTACCAACGCTTCCGCCTGT
GGCACCGCCTGGACATGATCTCCATCTCGGCCTACTTCCAGCTGCTCCCG
GGCGAGCGCGGGCCGTCGCCGGACATGGCGGCCACCTCGGCGCTGTGGCG
CCGCAAGGCCGCCGAGATCCGCGCCTGGCGCCTGGCGCGCGGCCTCGCCG
CCAAGAAGCTGCTCATCGCCGAGGTCGGCGTGCAGAGCAAGGGCGACGGC
GTCGTGTACCGCGTGCCGTGGAACTGGAGCGTGCGCGCCCCCGTCAACTT
TCACGAGCAGGAGAAGATGTACGCGGGCATCTGCGACGCCTTCAGCGACC
CTGCCTGGGTCGCCGGCATCCTCTTCTGGAACTGGGAGCTGCAGCCGTAC
GCCGGCACCTCGTTCCCGACCTCCGCCGACTACACGCCGCAGAACAAGCC
CGCCGAGCAGGTCATGCGCCGCTGCTTTGCGCGCGCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1871402..1872541-

>Gvermi7675.t1 ID=Gvermi7675.t1|Name=Gvermi7675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1023bp|location=Sequence derived from alignment at ScGOVlb_64:1871402..1872541- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACCGCCCCGCCTCGCTCACCCTCTGCGCCCTGCTGCTGGCCGCCGC
CGCCGCCACCGTCGCCGCCAACCCCGCCCTGGCCGTGCGCGGCGCCGCCT
TCTCCACGGGCCACGACCCAACCGCCTACCGCTACGGCTACGTCCCGGCC
TCGCTGCGCCAGCTGCGCCGCACCGGGTCCAACTACGTCCAGATCTCCGT
CTACGCCCGCATGCGCTCCCTCAACGCCGCCAACGCCACCCAGCAGACCG
ACGACGCCTCCATCCGCTACATTGTGCGCGCCGCCCATCGCGCCGGCTTC
CGCGTCTTCCTCAAGCCTGTCATCGAGATCGCCGGCGACACTTGGCGAGG
CTTTCTGCCCGGCACCGCTGCCTGGTTCCAAAACGTGTACCGCCCGTTCA
TCGCCCACATGGCCACCATCGCCGCGCAGGAGCGCGTTGACATCTTCTCG
GTCGGCTCCGAGTACCGCAACAGCGAGGTGCAGGTGCGCCAGTGGAGCTC
CGTCATCGACCTCGTGCGCTCCGTGTACCGCGGCCCCATCACGTACATCG
CCAACCACGACTCGTACCAACGCTTCCGCCTGTGGCACCGCCTGGACATG
ATCTCCATCTCGGCCTACTTCCAGCTGCTCCCGGGCGAGCGCGGGCCGTC
GCCGGACATGGCGGCCACCTCGGCGCTGTGGCGCCGCAAGGCCGCCGAGA
TCCGCGCCTGGCGCCTGGCGCGCGGCCTCGCCGCCAAGAAGCTGCTCATC
GCCGAGGTCGGCGTGCAGAGCAAGGGCGACGGCGTCGTGTACCGCGTGCC
GTGGAACTGGAGCGTGCGCGCCCCCGTCAACTTTCACGAGCAGGAGAAGA
TGTACGCGGGCATCTGCGACGCCTTCAGCGACCCTGCCTGGGTCGCCGGC
ATCCTCTTCTGGAACTGGGAGCTGCAGCCGTACGCCGGCACCTCGTTCCC
GACCTCCGCCGACTACACGCCGCAGAACAAGCCCGCCGAGCAGGTCATGC
GCCGCTGCTTTGCGCGCGCCTGA
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