Gvermi7674.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7674.t1
Unique NameGvermi7674.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1869887..1870561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7674Gvermi7674Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1869887..1870561 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7674.t1.stop1Gvermi7674.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1869887..1869889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7674.t1.CDS1Gvermi7674.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1869887..1870561 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7674.t1.exon1Gvermi7674.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1869887..1870561 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7674.t1.start1Gvermi7674.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1870559..1870561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7674.t1Gvermi7674.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1869887..1870561 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7674.t1 ID=Gvermi7674.t1|Name=Gvermi7674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=225bp
MRTSSVCFTLVSLALTFAACGADRICPNQCRANRQAAVNDCNNFNNEIYA
LCEVVSCQGGFSCSFPSNSFLIDYDQFANLEMVIEYTWSPEHRDLDTSTR
LMGSDVINVGFSCPGTSPIMSYGGDVASYGGTEYAVIDLQDSAGGLFDDS
VAIHAHAGWHGTQNHGPARVSVYMRGKADKVLAVGTVLSTEIYPGTQSGC
ANKHVATVVYFHGNDNTRITLSRA*
back to top

spliced messenger RNA

>Gvermi7674.t1 ID=Gvermi7674.t1|Name=Gvermi7674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=675bp|location=Sequence derived from alignment at ScGOVlb_64:1869887..1870561- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCACTTCATCTGTGTGTTTCACGCTGGTCTCCCTCGCGCTCACGTT
TGCCGCATGTGGCGCCGATCGCATCTGCCCGAATCAGTGCCGTGCCAATC
GACAGGCCGCCGTGAATGACTGCAACAACTTTAATAACGAGATTTATGCC
CTGTGCGAGGTGGTGAGCTGCCAAGGCGGCTTCTCATGCTCCTTCCCCTC
CAACTCCTTCCTAATCGATTACGATCAGTTCGCAAATCTCGAAATGGTCA
TCGAATACACGTGGTCGCCTGAGCACCGCGATTTGGACACCAGCACCAGG
CTCATGGGGTCCGACGTCATCAACGTGGGCTTTTCGTGCCCCGGCACCTC
CCCAATCATGTCGTACGGCGGCGACGTGGCCAGTTACGGCGGCACCGAGT
ATGCCGTGATAGACCTGCAGGACTCTGCCGGAGGGCTGTTTGACGATTCG
GTCGCCATCCATGCGCACGCCGGATGGCATGGCACGCAGAACCACGGCCC
GGCGCGCGTTTCCGTGTACATGCGGGGGAAGGCCGACAAGGTTTTGGCCG
TCGGAACTGTGCTGTCGACGGAGATCTACCCCGGAACGCAGAGCGGCTGT
GCGAACAAGCACGTTGCAACCGTGGTGTACTTCCACGGAAACGACAACAC
GCGCATCACGCTCTCCAGAGCATGA
back to top

protein sequence of Gvermi7674.t1

>Gvermi7674.t1 ID=Gvermi7674.t1|Name=Gvermi7674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=225bp
MRTSSVCFTLVSLALTFAACGADRICPNQCRANRQAAVNDCNNFNNEIYA
LCEVVSCQGGFSCSFPSNSFLIDYDQFANLEMVIEYTWSPEHRDLDTSTR
LMGSDVINVGFSCPGTSPIMSYGGDVASYGGTEYAVIDLQDSAGGLFDDS
VAIHAHAGWHGTQNHGPARVSVYMRGKADKVLAVGTVLSTEIYPGTQSGC
ANKHVATVVYFHGNDNTRITLSRA*
back to top

mRNA from alignment at ScGOVlb_64:1869887..1870561-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7674.t1 ID=Gvermi7674.t1|Name=Gvermi7674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=675bp|location=Sequence derived from alignment at ScGOVlb_64:1869887..1870561- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCACTTCATCTGTGTGTTTCACGCTGGTCTCCCTCGCGCTCACGTT
TGCCGCATGTGGCGCCGATCGCATCTGCCCGAATCAGTGCCGTGCCAATC
GACAGGCCGCCGTGAATGACTGCAACAACTTTAATAACGAGATTTATGCC
CTGTGCGAGGTGGTGAGCTGCCAAGGCGGCTTCTCATGCTCCTTCCCCTC
CAACTCCTTCCTAATCGATTACGATCAGTTCGCAAATCTCGAAATGGTCA
TCGAATACACGTGGTCGCCTGAGCACCGCGATTTGGACACCAGCACCAGG
CTCATGGGGTCCGACGTCATCAACGTGGGCTTTTCGTGCCCCGGCACCTC
CCCAATCATGTCGTACGGCGGCGACGTGGCCAGTTACGGCGGCACCGAGT
ATGCCGTGATAGACCTGCAGGACTCTGCCGGAGGGCTGTTTGACGATTCG
GTCGCCATCCATGCGCACGCCGGATGGCATGGCACGCAGAACCACGGCCC
GGCGCGCGTTTCCGTGTACATGCGGGGGAAGGCCGACAAGGTTTTGGCCG
TCGGAACTGTGCTGTCGACGGAGATCTACCCCGGAACGCAGAGCGGCTGT
GCGAACAAGCACGTTGCAACCGTGGTGTACTTCCACGGAAACGACAACAC
GCGCATCACGCTCTCCAGAGCATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_64:1869887..1870561-

>Gvermi7674.t1 ID=Gvermi7674.t1|Name=Gvermi7674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=675bp|location=Sequence derived from alignment at ScGOVlb_64:1869887..1870561- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCACTTCATCTGTGTGTTTCACGCTGGTCTCCCTCGCGCTCACGTT
TGCCGCATGTGGCGCCGATCGCATCTGCCCGAATCAGTGCCGTGCCAATC
GACAGGCCGCCGTGAATGACTGCAACAACTTTAATAACGAGATTTATGCC
CTGTGCGAGGTGGTGAGCTGCCAAGGCGGCTTCTCATGCTCCTTCCCCTC
CAACTCCTTCCTAATCGATTACGATCAGTTCGCAAATCTCGAAATGGTCA
TCGAATACACGTGGTCGCCTGAGCACCGCGATTTGGACACCAGCACCAGG
CTCATGGGGTCCGACGTCATCAACGTGGGCTTTTCGTGCCCCGGCACCTC
CCCAATCATGTCGTACGGCGGCGACGTGGCCAGTTACGGCGGCACCGAGT
ATGCCGTGATAGACCTGCAGGACTCTGCCGGAGGGCTGTTTGACGATTCG
GTCGCCATCCATGCGCACGCCGGATGGCATGGCACGCAGAACCACGGCCC
GGCGCGCGTTTCCGTGTACATGCGGGGGAAGGCCGACAAGGTTTTGGCCG
TCGGAACTGTGCTGTCGACGGAGATCTACCCCGGAACGCAGAGCGGCTGT
GCGAACAAGCACGTTGCAACCGTGGTGTACTTCCACGGAAACGACAACAC
GCGCATCACGCTCTCCAGAGCATGA
back to top