Gvermi7668.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7668.t1
Unique NameGvermi7668.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1685345..1686178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7668Gvermi7668Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1685345..1686178 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7668.t1Gvermi7668.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1685345..1686178 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7668.t1.stop1Gvermi7668.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1685345..1685347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7668.t1.CDS1Gvermi7668.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1685345..1685356 -
Gvermi7668.t1.CDS2Gvermi7668.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1685455..1686098 -
Gvermi7668.t1.CDS3Gvermi7668.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1686151..1686178 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7668.t1.exon1Gvermi7668.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1685345..1685356 -
Gvermi7668.t1.exon2Gvermi7668.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1685455..1686098 -
Gvermi7668.t1.exon3Gvermi7668.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1686151..1686178 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7668.t1.intron1Gvermi7668.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1685357..1685454 -
Gvermi7668.t1.intron2Gvermi7668.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1686099..1686150 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7668.t1.start1Gvermi7668.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1686176..1686178 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7668.t1 ID=Gvermi7668.t1|Name=Gvermi7668.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=228bp
MQPASMPSNVILFLILEVNYSTFSFSTTTKNKIIEKCVSVVPSLETGFEK
HQFSPEARTAVGSCLSVDGDEVSIRLGNFSLESKTMRVSCGEKVYFKFKL
NDTRELSTANSEPFCMLTEFGDECVRVKFGDKEDENVMWMTPVFDKYDID
DEKREFTKTEIMFPFRNHWQFFAKRMLRNENFLSVFFRIDVLLDAVNETC
VFEEDGATATVIPTGIFVVLIACWTRF*
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spliced messenger RNA

>Gvermi7668.t1 ID=Gvermi7668.t1|Name=Gvermi7668.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=684bp|location=Sequence derived from alignment at ScGOVlb_64:1685345..1686178- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCTGCTAGCATGCCGTCGAACGTTATTTTGTTTTTGATTCTCGA
AGTGAACTATTCAACATTTTCATTCTCCACAACAACGAAAAATAAGATTA
TTGAAAAGTGCGTTTCCGTGGTGCCAAGCCTAGAGACAGGATTCGAGAAG
CACCAGTTCTCGCCAGAAGCTCGAACAGCAGTCGGATCGTGCCTCAGTGT
TGATGGCGATGAGGTGTCCATCCGCCTCGGAAATTTCAGCCTCGAGTCCA
AAACAATGCGTGTGAGCTGCGGCGAAAAGGTGTACTTCAAATTTAAACTT
AATGATACGCGTGAGCTTTCAACCGCAAACAGTGAGCCATTTTGCATGTT
AACCGAATTCGGAGACGAGTGTGTGAGAGTCAAATTTGGTGACAAAGAAG
ACGAAAACGTTATGTGGATGACACCGGTTTTTGACAAATACGACATAGAT
GATGAAAAGCGGGAGTTTACAAAGACCGAAATTATGTTTCCCTTTCGGAA
TCATTGGCAGTTCTTCGCCAAACGCATGCTTCGCAATGAAAATTTCCTCT
CTGTATTTTTCCGCATTGACGTACTACTTGACGCGGTGAATGAAACATGT
GTGTTTGAGGAGGACGGAGCAACGGCAACGGTCATTCCAACCGGGATTTT
TGTTGTATTGATAGCTTGTTGGACGCGCTTCTGA
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protein sequence of Gvermi7668.t1

>Gvermi7668.t1 ID=Gvermi7668.t1|Name=Gvermi7668.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=228bp
MQPASMPSNVILFLILEVNYSTFSFSTTTKNKIIEKCVSVVPSLETGFEK
HQFSPEARTAVGSCLSVDGDEVSIRLGNFSLESKTMRVSCGEKVYFKFKL
NDTRELSTANSEPFCMLTEFGDECVRVKFGDKEDENVMWMTPVFDKYDID
DEKREFTKTEIMFPFRNHWQFFAKRMLRNENFLSVFFRIDVLLDAVNETC
VFEEDGATATVIPTGIFVVLIACWTRF*
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mRNA from alignment at ScGOVlb_64:1685345..1686178-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7668.t1 ID=Gvermi7668.t1|Name=Gvermi7668.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=834bp|location=Sequence derived from alignment at ScGOVlb_64:1685345..1686178- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACCTGCTAGCATGCCGTCGAACGGTACGAATGCAGTCTCATAAAC
GCCGCATCAAGTTTTTAACCGTATGCACAGTTATTTTGTTTTTGATTCTC
GAAGTGAACTATTCAACATTTTCATTCTCCACAACAACGAAAAATAAGAT
TATTGAAAAGTGCGTTTCCGTGGTGCCAAGCCTAGAGACAGGATTCGAGA
AGCACCAGTTCTCGCCAGAAGCTCGAACAGCAGTCGGATCGTGCCTCAGT
GTTGATGGCGATGAGGTGTCCATCCGCCTCGGAAATTTCAGCCTCGAGTC
CAAAACAATGCGTGTGAGCTGCGGCGAAAAGGTGTACTTCAAATTTAAAC
TTAATGATACGCGTGAGCTTTCAACCGCAAACAGTGAGCCATTTTGCATG
TTAACCGAATTCGGAGACGAGTGTGTGAGAGTCAAATTTGGTGACAAAGA
AGACGAAAACGTTATGTGGATGACACCGGTTTTTGACAAATACGACATAG
ATGATGAAAAGCGGGAGTTTACAAAGACCGAAATTATGTTTCCCTTTCGG
AATCATTGGCAGTTCTTCGCCAAACGCATGCTTCGCAATGAAAATTTCCT
CTCTGTATTTTTCCGCATTGACGTACTACTTGACGCGGTGAATGAAACAT
GTGTGTTTGAGGAGGACGGAGCAACGGCAACGGTCATTCCAACCGGGATT
TTTGTTGTATTGATAGCTTGTTGGGTCGTCACCCTGTTTGCTTTCACAAC
GACTGCCTTTTTTCTGCATGGCAGGAGGTTTTACAACATCGAAAATGCCT
TTGATTTTGCTCGAAAGACAAGACGCGCTTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1685345..1686178-

>Gvermi7668.t1 ID=Gvermi7668.t1|Name=Gvermi7668.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=684bp|location=Sequence derived from alignment at ScGOVlb_64:1685345..1686178- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACCTGCTAGCATGCCGTCGAACGTTATTTTGTTTTTGATTCTCGA
AGTGAACTATTCAACATTTTCATTCTCCACAACAACGAAAAATAAGATTA
TTGAAAAGTGCGTTTCCGTGGTGCCAAGCCTAGAGACAGGATTCGAGAAG
CACCAGTTCTCGCCAGAAGCTCGAACAGCAGTCGGATCGTGCCTCAGTGT
TGATGGCGATGAGGTGTCCATCCGCCTCGGAAATTTCAGCCTCGAGTCCA
AAACAATGCGTGTGAGCTGCGGCGAAAAGGTGTACTTCAAATTTAAACTT
AATGATACGCGTGAGCTTTCAACCGCAAACAGTGAGCCATTTTGCATGTT
AACCGAATTCGGAGACGAGTGTGTGAGAGTCAAATTTGGTGACAAAGAAG
ACGAAAACGTTATGTGGATGACACCGGTTTTTGACAAATACGACATAGAT
GATGAAAAGCGGGAGTTTACAAAGACCGAAATTATGTTTCCCTTTCGGAA
TCATTGGCAGTTCTTCGCCAAACGCATGCTTCGCAATGAAAATTTCCTCT
CTGTATTTTTCCGCATTGACGTACTACTTGACGCGGTGAATGAAACATGT
GTGTTTGAGGAGGACGGAGCAACGGCAACGGTCATTCCAACCGGGATTTT
TGTTGTATTGATAGCTTGTTGGACGCGCTTCTGA
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