Gvermi7661.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7661.t1
Unique NameGvermi7661.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1492840..1493421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog936053.I1BSB5
PFAMsAsp_protease_2,RVT_1,Retrotrans_gag,gag-asp_proteas,rve,zf-CCHC
Max annot lvl4751|Fungi
Evalue1.26e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3NVKU@4751|Fungi,1GWQ7@112252|Fungi incertae sedis
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7661Gvermi7661Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1492840..1493421 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7661.t1.stop1Gvermi7661.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1492840..1492842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7661.t1.CDS1Gvermi7661.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1492840..1493421 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7661.t1.exon1Gvermi7661.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1492840..1493421 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7661.t1.start1Gvermi7661.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1493419..1493421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7661.t1Gvermi7661.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1492840..1493421 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7661.t1 ID=Gvermi7661.t1|Name=Gvermi7661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=194bp
MFTPHPLAMLPTKLTSADVLGLVQSSDETASAEGFLTEEVDSSALAIDPE
SGAEEHTDTSYDKLGPVKALEELDLSHLPDSHRERLHHMLREYTSMWDGS
LGEINSTEHRIDLLPHACPVAQPPYRAGPKAREEEQFHVDKMLRAGVIEF
AQSLWATPVVLALKGGRDLAVLCGLPSTERRYGPRHLPHTPYG*
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spliced messenger RNA

>Gvermi7661.t1 ID=Gvermi7661.t1|Name=Gvermi7661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=582bp|location=Sequence derived from alignment at ScGOVlb_64:1492840..1493421- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCACGCCGCATCCGCTCGCAATGCTCCCCACGAAGCTCACAAGCGC
TGACGTACTCGGCCTGGTCCAGTCTTCAGACGAAACCGCATCCGCGGAAG
GCTTCTTGACCGAGGAGGTAGACAGCTCAGCGCTTGCTATTGACCCGGAA
TCGGGAGCGGAAGAGCACACTGATACCAGTTACGACAAACTGGGCCCAGT
GAAGGCACTCGAAGAATTGGATCTCAGCCACCTACCCGACTCGCACCGCG
AAAGACTCCACCATATGTTGCGGGAGTATACCTCAATGTGGGATGGCTCA
CTTGGGGAGATCAATTCCACGGAACACCGGATCGACTTGTTGCCGCACGC
TTGTCCGGTTGCGCAACCCCCATATAGGGCAGGCCCGAAAGCTCGGGAAG
AGGAGCAGTTCCATGTGGACAAGATGCTCCGAGCTGGAGTGATCGAGTTT
GCGCAGTCGCTATGGGCGACCCCAGTCGTACTGGCACTGAAGGGCGGACG
GGACCTGGCGGTTCTGTGTGGACTACCGTCGACTGAACGCCGTTACGGTC
CGCGACACCTACCCCATACCCCATATGGATGA
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protein sequence of Gvermi7661.t1

>Gvermi7661.t1 ID=Gvermi7661.t1|Name=Gvermi7661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=194bp
MFTPHPLAMLPTKLTSADVLGLVQSSDETASAEGFLTEEVDSSALAIDPE
SGAEEHTDTSYDKLGPVKALEELDLSHLPDSHRERLHHMLREYTSMWDGS
LGEINSTEHRIDLLPHACPVAQPPYRAGPKAREEEQFHVDKMLRAGVIEF
AQSLWATPVVLALKGGRDLAVLCGLPSTERRYGPRHLPHTPYG*
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mRNA from alignment at ScGOVlb_64:1492840..1493421-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7661.t1 ID=Gvermi7661.t1|Name=Gvermi7661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=582bp|location=Sequence derived from alignment at ScGOVlb_64:1492840..1493421- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCACGCCGCATCCGCTCGCAATGCTCCCCACGAAGCTCACAAGCGC
TGACGTACTCGGCCTGGTCCAGTCTTCAGACGAAACCGCATCCGCGGAAG
GCTTCTTGACCGAGGAGGTAGACAGCTCAGCGCTTGCTATTGACCCGGAA
TCGGGAGCGGAAGAGCACACTGATACCAGTTACGACAAACTGGGCCCAGT
GAAGGCACTCGAAGAATTGGATCTCAGCCACCTACCCGACTCGCACCGCG
AAAGACTCCACCATATGTTGCGGGAGTATACCTCAATGTGGGATGGCTCA
CTTGGGGAGATCAATTCCACGGAACACCGGATCGACTTGTTGCCGCACGC
TTGTCCGGTTGCGCAACCCCCATATAGGGCAGGCCCGAAAGCTCGGGAAG
AGGAGCAGTTCCATGTGGACAAGATGCTCCGAGCTGGAGTGATCGAGTTT
GCGCAGTCGCTATGGGCGACCCCAGTCGTACTGGCACTGAAGGGCGGACG
GGACCTGGCGGTTCTGTGTGGACTACCGTCGACTGAACGCCGTTACGGTC
CGCGACACCTACCCCATACCCCATATGGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1492840..1493421-

>Gvermi7661.t1 ID=Gvermi7661.t1|Name=Gvermi7661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=582bp|location=Sequence derived from alignment at ScGOVlb_64:1492840..1493421- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCACGCCGCATCCGCTCGCAATGCTCCCCACGAAGCTCACAAGCGC
TGACGTACTCGGCCTGGTCCAGTCTTCAGACGAAACCGCATCCGCGGAAG
GCTTCTTGACCGAGGAGGTAGACAGCTCAGCGCTTGCTATTGACCCGGAA
TCGGGAGCGGAAGAGCACACTGATACCAGTTACGACAAACTGGGCCCAGT
GAAGGCACTCGAAGAATTGGATCTCAGCCACCTACCCGACTCGCACCGCG
AAAGACTCCACCATATGTTGCGGGAGTATACCTCAATGTGGGATGGCTCA
CTTGGGGAGATCAATTCCACGGAACACCGGATCGACTTGTTGCCGCACGC
TTGTCCGGTTGCGCAACCCCCATATAGGGCAGGCCCGAAAGCTCGGGAAG
AGGAGCAGTTCCATGTGGACAAGATGCTCCGAGCTGGAGTGATCGAGTTT
GCGCAGTCGCTATGGGCGACCCCAGTCGTACTGGCACTGAAGGGCGGACG
GGACCTGGCGGTTCTGTGTGGACTACCGTCGACTGAACGCCGTTACGGTC
CGCGACACCTACCCCATACCCCATATGGATGA
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