Gvermi7659.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7659.t1
Unique NameGvermi7659.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length623
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1487014..1488882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7659Gvermi7659Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1487014..1488882 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7659.t1.start1Gvermi7659.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1487014..1487016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7659.t1.CDS1Gvermi7659.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1487014..1488882 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7659.t1.exon1Gvermi7659.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1487014..1488882 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7659.t1.stop1Gvermi7659.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1488880..1488882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7659.t1Gvermi7659.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1487014..1488882 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7659.t1 ID=Gvermi7659.t1|Name=Gvermi7659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=623bp
MPPNQPPNNPPQGYFPGFWSVPHPSAGRGGQPGMGTSLNAAQPGMKTSAN
AAQPGLGASVHTPQTVAAQPPGFVPSPFMVPYPMPMGSWLAAHLLPAAHS
AAGGHVWTAFDSPVGLNPNNPRHAMRLRLAPWFHPVAVLDKGLTSAYADA
SEDLPGDLPGIVTTSWDWRHRIFIPVHHIRRLPRESVASAHAAFVTIAYQ
RQTHAPFETPIPPGFWFDIGLYRTRGEVAYYKRLAALETLAWRRIPIARH
EALCWDRPILRAEFRYLSRDYRYNFLQHFIRFERSWRSRLGYFVPYQIIE
VERIAAPHRRGRYVPLPDWWAALQVYRGCYVELPPLLNYMGSYPMTDPHA
GLWSVVVTEWATRVAAYILAEAYDQYRLWYATPRVRPAIRILDLRVPFGA
EENAEDLFTLLDFIDGVDWSVVPITQRMCDQAAAGSGPVLGRNTALAGDY
VFFDLWEYRELTGAEAGEFCEAPRRIPEGHPIGFVDSDDYQQAYLGGDPM
VDKDSDSGGEAPYAMDVASAGGVSGRSPSGVGDVAPNVPSEGTSATAVGS
HGGGAGSGSAGYAAGAAAPGSNASSAGEAEVIARYIRSSGLSAHEAGGDV
STMRDALASRFLGDPSPPGGCG*
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spliced messenger RNA

>Gvermi7659.t1 ID=Gvermi7659.t1|Name=Gvermi7659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1869bp|location=Sequence derived from alignment at ScGOVlb_64:1487014..1488882+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcctccgaatcagccgccaaacaaccctccacaaggatacttccccgg
gttctggtccgtgccacacccgtcagcgggtcgtggtggccaacctggta
tggggactagtttaaacgcagcgcaacccggtatgaagacaagtgcaaac
gcagcgcaacccggcctcggggcatccgtacacacccctcaaaccgtcgc
cgcgcaaccgccaggcttcgtaccttccccattcatggttccgtacccaa
tgccgatggggagctggcttgctgcccacctgctccccgcggctcattcg
gcggcaggaggccatgtgtggacagcctttgactcccccgtagggctgaa
cccgaacaatcctcggcatgcgatgcgtttgcgcttggcgccgtggttcc
acccggtcgctgtccttgataagggtcttacctccgcatacgcggacgcc
tcggaagacttgcccggcgatcttcccggtatcgttacgacctcgtggga
ttggcgtcaccgaattttcattccggttcatcacatccgtcggcttcccc
gggaaagcgtagcctccgcacatgcggcattcgttaccatcgcgtatcag
cggcagacccacgcgccgtttgagacgccgatacctccgggcttttggtt
tgacatcgggttgtaccgcacacgcggggaggtcgcgtactacaagcgct
tagccgcgctggaaacgttggcatggcgccgtatcccgatcgctcggcat
gaagccctatgttgggatcgaccgattcttcgggcagagttccgatatct
ctcacgagactatcggtacaactttctgcagcacttcatccgtttcgaac
ggagttggcgatcccgactcgggtacttcgttccatatcaaatcatagaa
gtcgaacgcatcgcagctccccaccggcggggtaggtatgtacctctccc
ggattggtgggcagcgttacaggtctatcgcggatgctacgtcgaacttc
ccccgctgctgaactacatggggtcgtatcctatgacggatccccacgca
gggttatggtccgtggtggtcacggagtgggctacccgcgtcgcggcata
tatcctcgctgaggcatacgaccaatatcgcttgtggtatgctactcccc
gagtacggccggcgatccgaattctggatcttcgtgttccctttggggcc
gaggagaacgccgaggacctctttactctcctggacttcatcgacggagt
cgattggagtgtggtccccataacgcagagaatgtgcgaccaagcggccg
ctggttcaggtcctgttctcgggcgcaataccgcactcgcgggcgattat
gtgtttttcgacctctgggagtatagagaactgacgggcgcagaggcggg
agaattttgcgaagcgccgcgccggattcccgaagggcaccccattgggt
tcgtcgattcggacgactaccaacaggcatatctgggtggtgacccaatg
gtggataaagattccgactcgggtggtgaagcgccttatgcgatggatgt
cgcctccgcgggcggtgttagtggccgttccccatccggggtgggcgatg
tcgcgccgaatgtccccagcgagggtacgtctgcgacagccgtcggctcc
catggagggggtgctggatccggctcggctggttacgcggcgggggcggc
agcgccgggctccaacgcgagcagtgccggcgaagccgaggtcatcgcga
ggtacatccggagttccggtttgagtgcccacgaggcggggggtgacgtc
tccacgatgcgggatgcgctcgcgagccgctttctcggggacccttcccc
acctgggggctgcggttaa
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protein sequence of Gvermi7659.t1

>Gvermi7659.t1 ID=Gvermi7659.t1|Name=Gvermi7659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=623bp
MPPNQPPNNPPQGYFPGFWSVPHPSAGRGGQPGMGTSLNAAQPGMKTSAN
AAQPGLGASVHTPQTVAAQPPGFVPSPFMVPYPMPMGSWLAAHLLPAAHS
AAGGHVWTAFDSPVGLNPNNPRHAMRLRLAPWFHPVAVLDKGLTSAYADA
SEDLPGDLPGIVTTSWDWRHRIFIPVHHIRRLPRESVASAHAAFVTIAYQ
RQTHAPFETPIPPGFWFDIGLYRTRGEVAYYKRLAALETLAWRRIPIARH
EALCWDRPILRAEFRYLSRDYRYNFLQHFIRFERSWRSRLGYFVPYQIIE
VERIAAPHRRGRYVPLPDWWAALQVYRGCYVELPPLLNYMGSYPMTDPHA
GLWSVVVTEWATRVAAYILAEAYDQYRLWYATPRVRPAIRILDLRVPFGA
EENAEDLFTLLDFIDGVDWSVVPITQRMCDQAAAGSGPVLGRNTALAGDY
VFFDLWEYRELTGAEAGEFCEAPRRIPEGHPIGFVDSDDYQQAYLGGDPM
VDKDSDSGGEAPYAMDVASAGGVSGRSPSGVGDVAPNVPSEGTSATAVGS
HGGGAGSGSAGYAAGAAAPGSNASSAGEAEVIARYIRSSGLSAHEAGGDV
STMRDALASRFLGDPSPPGGCG*
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mRNA from alignment at ScGOVlb_64:1487014..1488882+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7659.t1 ID=Gvermi7659.t1|Name=Gvermi7659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1869bp|location=Sequence derived from alignment at ScGOVlb_64:1487014..1488882+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcctccgaatcagccgccaaacaaccctccacaaggatacttccccgg
gttctggtccgtgccacacccgtcagcgggtcgtggtggccaacctggta
tggggactagtttaaacgcagcgcaacccggtatgaagacaagtgcaaac
gcagcgcaacccggcctcggggcatccgtacacacccctcaaaccgtcgc
cgcgcaaccgccaggcttcgtaccttccccattcatggttccgtacccaa
tgccgatggggagctggcttgctgcccacctgctccccgcggctcattcg
gcggcaggaggccatgtgtggacagcctttgactcccccgtagggctgaa
cccgaacaatcctcggcatgcgatgcgtttgcgcttggcgccgtggttcc
acccggtcgctgtccttgataagggtcttacctccgcatacgcggacgcc
tcggaagacttgcccggcgatcttcccggtatcgttacgacctcgtggga
ttggcgtcaccgaattttcattccggttcatcacatccgtcggcttcccc
gggaaagcgtagcctccgcacatgcggcattcgttaccatcgcgtatcag
cggcagacccacgcgccgtttgagacgccgatacctccgggcttttggtt
tgacatcgggttgtaccgcacacgcggggaggtcgcgtactacaagcgct
tagccgcgctggaaacgttggcatggcgccgtatcccgatcgctcggcat
gaagccctatgttgggatcgaccgattcttcgggcagagttccgatatct
ctcacgagactatcggtacaactttctgcagcacttcatccgtttcgaac
ggagttggcgatcccgactcgggtacttcgttccatatcaaatcatagaa
gtcgaacgcatcgcagctccccaccggcggggtaggtatgtacctctccc
ggattggtgggcagcgttacaggtctatcgcggatgctacgtcgaacttc
ccccgctgctgaactacatggggtcgtatcctatgacggatccccacgca
gggttatggtccgtggtggtcacggagtgggctacccgcgtcgcggcata
tatcctcgctgaggcatacgaccaatatcgcttgtggtatgctactcccc
gagtacggccggcgatccgaattctggatcttcgtgttccctttggggcc
gaggagaacgccgaggacctctttactctcctggacttcatcgacggagt
cgattggagtgtggtccccataacgcagagaatgtgcgaccaagcggccg
ctggttcaggtcctgttctcgggcgcaataccgcactcgcgggcgattat
gtgtttttcgacctctgggagtatagagaactgacgggcgcagaggcggg
agaattttgcgaagcgccgcgccggattcccgaagggcaccccattgggt
tcgtcgattcggacgactaccaacaggcatatctgggtggtgacccaatg
gtggataaagattccgactcgggtggtgaagcgccttatgcgatggatgt
cgcctccgcgggcggtgttagtggccgttccccatccggggtgggcgatg
tcgcgccgaatgtccccagcgagggtacgtctgcgacagccgtcggctcc
catggagggggtgctggatccggctcggctggttacgcggcgggggcggc
agcgccgggctccaacgcgagcagtgccggcgaagccgaggtcatcgcga
ggtacatccggagttccggtttgagtgcccacgaggcggggggtgacgtc
tccacgatgcgggatgcgctcgcgagccgctttctcggggacccttcccc
acctgggggctgcggttaa
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Coding sequence (CDS) from alignment at ScGOVlb_64:1487014..1488882+

>Gvermi7659.t1 ID=Gvermi7659.t1|Name=Gvermi7659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1869bp|location=Sequence derived from alignment at ScGOVlb_64:1487014..1488882+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcctccgaatcagccgccaaacaaccctccacaaggatacttccccgg
gttctggtccgtgccacacccgtcagcgggtcgtggtggccaacctggta
tggggactagtttaaacgcagcgcaacccggtatgaagacaagtgcaaac
gcagcgcaacccggcctcggggcatccgtacacacccctcaaaccgtcgc
cgcgcaaccgccaggcttcgtaccttccccattcatggttccgtacccaa
tgccgatggggagctggcttgctgcccacctgctccccgcggctcattcg
gcggcaggaggccatgtgtggacagcctttgactcccccgtagggctgaa
cccgaacaatcctcggcatgcgatgcgtttgcgcttggcgccgtggttcc
acccggtcgctgtccttgataagggtcttacctccgcatacgcggacgcc
tcggaagacttgcccggcgatcttcccggtatcgttacgacctcgtggga
ttggcgtcaccgaattttcattccggttcatcacatccgtcggcttcccc
gggaaagcgtagcctccgcacatgcggcattcgttaccatcgcgtatcag
cggcagacccacgcgccgtttgagacgccgatacctccgggcttttggtt
tgacatcgggttgtaccgcacacgcggggaggtcgcgtactacaagcgct
tagccgcgctggaaacgttggcatggcgccgtatcccgatcgctcggcat
gaagccctatgttgggatcgaccgattcttcgggcagagttccgatatct
ctcacgagactatcggtacaactttctgcagcacttcatccgtttcgaac
ggagttggcgatcccgactcgggtacttcgttccatatcaaatcatagaa
gtcgaacgcatcgcagctccccaccggcggggtaggtatgtacctctccc
ggattggtgggcagcgttacaggtctatcgcggatgctacgtcgaacttc
ccccgctgctgaactacatggggtcgtatcctatgacggatccccacgca
gggttatggtccgtggtggtcacggagtgggctacccgcgtcgcggcata
tatcctcgctgaggcatacgaccaatatcgcttgtggtatgctactcccc
gagtacggccggcgatccgaattctggatcttcgtgttccctttggggcc
gaggagaacgccgaggacctctttactctcctggacttcatcgacggagt
cgattggagtgtggtccccataacgcagagaatgtgcgaccaagcggccg
ctggttcaggtcctgttctcgggcgcaataccgcactcgcgggcgattat
gtgtttttcgacctctgggagtatagagaactgacgggcgcagaggcggg
agaattttgcgaagcgccgcgccggattcccgaagggcaccccattgggt
tcgtcgattcggacgactaccaacaggcatatctgggtggtgacccaatg
gtggataaagattccgactcgggtggtgaagcgccttatgcgatggatgt
cgcctccgcgggcggtgttagtggccgttccccatccggggtgggcgatg
tcgcgccgaatgtccccagcgagggtacgtctgcgacagccgtcggctcc
catggagggggtgctggatccggctcggctggttacgcggcgggggcggc
agcgccgggctccaacgcgagcagtgccggcgaagccgaggtcatcgcga
ggtacatccggagttccggtttgagtgcccacgaggcggggggtgacgtc
tccacgatgcgggatgcgctcgcgagccgctttctcggggacccttcccc
acctgggggctgcggttaa
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