Gvermi7656.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7656.t1
Unique NameGvermi7656.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length112
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1449814..1454723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7656Gvermi7656Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1449814..1454723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7656.t1Gvermi7656.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1449814..1454723 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7656.t1.stop1Gvermi7656.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1449814..1449816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7656.t1.CDS1Gvermi7656.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1449814..1449817 -
Gvermi7656.t1.CDS2Gvermi7656.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1454205..1454208 -
Gvermi7656.t1.CDS3Gvermi7656.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1454292..1454532 -
Gvermi7656.t1.CDS4Gvermi7656.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1454637..1454723 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7656.t1.exon1Gvermi7656.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1449814..1449817 -
Gvermi7656.t1.exon2Gvermi7656.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1454205..1454208 -
Gvermi7656.t1.exon3Gvermi7656.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1454292..1454532 -
Gvermi7656.t1.exon4Gvermi7656.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1454637..1454723 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7656.t1.intron1Gvermi7656.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1449818..1454204 -
Gvermi7656.t1.intron2Gvermi7656.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1454209..1454291 -
Gvermi7656.t1.intron3Gvermi7656.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1454533..1454636 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7656.t1.start1Gvermi7656.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1454721..1454723 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7656.t1 ID=Gvermi7656.t1|Name=Gvermi7656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=112bp
MKPVRSGAVDQLPALHIPCKYDVRTSVPKIYRHNAQAQNATLTCDRPPPT
NQSESPKYLCEVDITVIRNRNCTLFITERYLFPYTTGRDARREIPLIERQ
QTATNVVAKQR*
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spliced messenger RNA

>Gvermi7656.t1 ID=Gvermi7656.t1|Name=Gvermi7656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=336bp|location=Sequence derived from alignment at ScGOVlb_64:1449814..1454723- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCTGTTCGATCAGGCGCTGTTGACCAGCTCCCTGCTCTTCACAT
CCCATGCAAATACGACGTGCGCACATCCGTTCCTAAGATCTACCGCCATA
ACGCTCAGGCCCAGAACGCCACTTTAACATGCGACAGACCTCCGCCCACA
AACCAGTCCGAGTCCCCAAAGTATCTCTGCGAGGTCGATATCACTGTTAT
CCGCAACCGTAACTGCACCCTGTTTATCACCGAGCGTTATCTCTTCCCGT
ACACAACCGGCCGAGATGCCAGGCGCGAAATCCCGCTCATCGAGCGGCAG
CAGACTGCCACAAACGTTGTCGCCAAACAAAGGTAA
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protein sequence of Gvermi7656.t1

>Gvermi7656.t1 ID=Gvermi7656.t1|Name=Gvermi7656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=112bp
MKPVRSGAVDQLPALHIPCKYDVRTSVPKIYRHNAQAQNATLTCDRPPPT
NQSESPKYLCEVDITVIRNRNCTLFITERYLFPYTTGRDARREIPLIERQ
QTATNVVAKQR*
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mRNA from alignment at ScGOVlb_64:1449814..1454723-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7656.t1 ID=Gvermi7656.t1|Name=Gvermi7656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=4910bp|location=Sequence derived from alignment at ScGOVlb_64:1449814..1454723- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCTGTTCGATCAGGCGCTGTTGACCAGCTCCCTGCTCTTCACAT
CCCATGCAAATACGACGTGCGCACATCCGTTCCTAAGGTAGTAACATCCT
TGCGCCGCCGAGCGCCCTCCACCCGCCATCAAGGCGAGTTACAACAACGC
TAATGACACAATTGCTGGTCGTGCTTACGCTCCTTTTCCAGATCTACCGC
CATAACGCTCAGGCCCAGAACGCCACTTTAACATGCGACAGACCTCCGCC
CACAAACCAGTCCGAGTCCCCAAAGTATCTCTGCGAGGTCGATATCACTG
TTATCCGCAACCGTAACTGCACCCTGTTTATCACCGAGCGTTATCTCTTC
CCGTACACAACCGGCCGAGATGCCAGGCGCGAAATCCCGCTCATCGAGCG
GCAGCAGACTGCCACAAACGTTGTCGCCAAACGTGACAACAAAACAGTCT
TTACCGCAGACGAACTTCGCTCCAAAGACGGTCGCAACGAAGCTCTCGTG
AGGTTTCCCACCAAGAAAGGTAACCGCTCCACGCTGTTCACGCTGCAGTA
CACGCTCGACAGCGGCGTGACCCGCTTCACGACATTGTGCCCGGAAACAG
ACGCCGAGCCGCCGGAAGGCGCAATTGTGAATGTCCTGCGGTGGAGGACG
GGCACCTGGGACCAGAAATTCGACAAAATGCGGGTTAAATTTATCAACGC
CGGTGGAAACGCTTCACTGAGCGTGGCGGCTGCTCCAAAGGCTGTTTCGT
CGTCCTTCTCCGGAAGAAACTCTACCGTGACGCTGGTGTGGAACAATGTG
GCGGAGCCCATAGACGTATTGGTTGCTGAGCAGGGTACAGAATTGTGCTC
GAGTGATCTTCAATGCTTTTCAGAGGGCGGGGGTTCCCTTTCTATATTCG
CGATAATCATCATCGCTGGTGTGTCCTTGTATTCATTTTGCTTTTTGGGA
GTTGTTTTAAGTGGCAATGCCGGAGGTGGAAGGAGATTTGCAAGTGCTGG
CGTTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGAGGTGGAG
GTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGCGGTTGAGCA
TTGGTGAAAAAGTTTATGCGTCGTTTTGACAAACTGCATGTTATTGAATG
TCTTTTTAAATCACAAAACATCAGCTTCAAAAGCTCAAAGCTTCACGACG
TGCCTAACGTCTTCTTCTTCCTCTTTAATATGCAAGTTGTGTTCTATTTC
CAAGCACAACCAGGATCTATCTTTTCAGATACTTCTCTTTCTTCAGAAAA
CCTAAAGCTTTGCTAGGCGCTATAAGTAGCGGTTCATTAGACGACATGAT
GCGCTGCTCTTCCTCATCTTTATGCAGATCGCGACGACTACTGGCAGTCA
ACGGAAATATCGAAACCACATGTTTGCTACCATTATCAGCGTTCAATACA
CATTTGCATCGAAGGGTTCTGTCTTTCGCATAGATATCAAGTTTTTAGAT
ATCAATGTATATTTTATTTATTTTTGAAAACAATGCAAACTTATGTGGTA
CGATTCATATTTCTGTCGAGCACAAGATTGTCTCCAGCCATGAAAAAATA
TTAACGTTTTTAGACTCTGGGTGGAACAAAAAAAATATTTTCCTCTCATC
AGGGCAAAGGTTGCCTATCATAAATATAAAAGAAGATCAAGAGCAAAAAT
AATTGTTAGACACTGCACTTGATTAAAAAAAAATAGGAAAAGCAATATTG
ATGCTTTTTAAAACTTGTTTGCACAGGCTACATAAAGATGTACCTAGATA
TTGTGTTTTCCGGCTAGAATTATTATTTCCTACTTGGTTCATTCTTGCCA
GCTCTCTACGTTCGTTAACCAAAAAAGGACTTCGTCGTCGCTTCGCATTC
GCTTCGCTTCGCGCTTAAAGAAAAAACAATATTTTTGTCAACAACAACAA
TTATTTAATTTGTACGAAGCTATTACTAAAAACTAAATCCACGCGAAGCA
CCGTGCGAGCACTTAGTCCAAGATGGCCTACCCACCCCCCAGCAACCCCA
TCCGCCAGTCGACTACCCTAGAACCCAAAAAATTCCATTAGAGTCCGACA
ATCAGGATTTTCCGATTTAAAACAGAATTTTTTAGAACTGCTCAAAATAT
CGTTCAAAACTGAAAATGACCCCGCAGAAAAATTACTAAGTCCAAGAGTC
TCCCCGACTAACCAACCTGAGAACCCAAGTAATTCCGTAAAAATTCCTAA
GTCCCAGGATGTTCCCGCTGTTTCCAAAAAATTGATTAATTTTGATTTCG
CACCAGAAAAGTTGAATCTGTGCAAAAAACCGTTTAAAACCGACTTCGAG
TTACGCGAGAAAAAATTCCTAAGTCCAAGACATTTCCCATTGAAAAAATT
CCGAAGTCCAAAACCGCTTCCAAAAAACTTCTTATCTTCTTTCCATTTCC
ATTAGGCTTCCTGTCCAAATACTTGTGCTTGCACTGACTCCCGACCCCCA
ACCCAACAGGGTGGCGAAACGTTGAAGAACGTTGATGCGCTGGTAACCAC
CGCCTGAAAATCGAGTCGCTGGCGTTCCGTCAGAGTCTTGAGAAAACTAT
ACATACGATGAGGCTGAATGTAAAGTTTAGCATTCTTCTCGGACTGCCAG
CGACCACGGTTCTTAATTTCATGGTCGGGGAGGCGACCATAAAGTTTATC
AGTCGTGGCACCACCAAAACGCAACATATGGGGGGTCACAATTTGGGAGA
TTCCCAGTCGTTGCATAGCACGTCGCAGATGAGCTCTAAATCGAGCGGCT
GGTACGGCGAAGAGTTTGAGTTCTCTTAATAGCCGTTTCCGCTCTACGAG
CCGAGACAATAAAACCGTGAGGAAGTAAGGCCGGATTGTCACTGTTTCGT
TACGCCCTCGCTTCGAAATTGAAATATTCATGCTGGCGTAATGCGGCCGA
GGTGTGGTTAACTCCAGGATAACGACATCATCCGTGTGTAAACCCAAAAG
GTCACCAAGCCGCAAATAGCCTTCGAAGAGGAGCAACATTCCAGTGCCAA
TATCCGGCTCCCCATGCCGGAAGTGGTCAAAAGCCAAGGCATATGCGACC
GACTCCGGACAAACCCCATGATGGCGAACTGGTTTTGCCTTCATCCACCC
CTGAATGCTAAGCGTAGACAGAGGTAGATTTCCAGCTAATTCATGGTAAA
AGAACTCCAAGCCAGCCTTTGCTTGGGCCGCTTGGGCCCACTGCAGATCA
GGGTTTGCCGTATGTCTTTCGACACAATACCTTGTAAATAACTTATCAAC
CTCCTTTATTGATGAATAATTTCGTTCTGAATCATCCAGCGTTTTTAACC
ACTCGACAAAATGTTCCAGATTTTTTCGATAATTTTTGAGAGTACTAGGC
TTTACTCTTTTGTGGGCGAGCTCATAAAGCCCGGGAGGGTTCATCAGCCG
GATTGATGGCTGATGGCACATAAAATGGCTCAAGCCCAAGGTTGCCCACT
AAGAGTATCGCCGCAACTCTACGACATATTCGATTAAATCTTTTAACACT
GCTAGGTCCTTTGCGCAACGCTCCAATGAGCGCTTGATTATCAATAAAGA
CTACAAGACGTTTGCCAAAATGTTTTTGCTGTCTTTGCGCCCAGCGGAGG
CCTAGTATGCATGCTTCCCCCTCTAAAAGGTGTATTGGTGAAGTTTTATG
CCACTTGTTTCTGATGGCCAGCTTCCATGGTTGTGCTTCAATCCAAGTAG
CTTGGTTTTCTGCGGATTCTCGCAGCAAACTGAAAGGATTTGTTGTCAAG
GTGTAAACAACGCCACCACCCCAGAAGCTGGCGTCAAAGCAGATAACCGT
CGCTGAGACCTCTCGAGTTAAATCGACGCGTATTAAAGGTGAGAGAGCCA
CGAGCAGAGACAATTCCTGTTTGGCAGCTTGTGACGCTACCACGGAGTCT
GTTTCTGCCCGACTCAACTTATATACTACGGATAAAACCGAGAACAATGG
TCGTTGGAGTAACAAGAACCACGCCCACTTGCCTAACACTCTTTGTAGCA
TCTTCACTTTCCATCTTCGCCGCTGGATAATTGCTTTTGTAGACCCGATT
AAATTTCGCAACTTTACTGCGTCAGGTAGCAATAACCCAGAGAGGTGTAC
TTCAATGCCTAGTACCTCCGTAAAGCTCCTTTCCCCAGGCCACGCAATTT
TTTGTGGCTTTGAGGGCAGGTTACTTTTTCTAGACTCGCCGACATCCGCT
TTCAGATTTTCTATTCCTTTTTGCATGTTCGTTCCCAAAGAAAAATAATC
ATCGACATACGCCCCAAATTGGAACTCCGAAATTTCTGTCACGTTCGTAA
TCCAATCATGCTGTTCCAGCCCAGCCCGCTCAAGCAGATATCTGTGTACG
CTTTGCGCAATAAAGACAGAGTGCGACCATCCCATTGGCATTGAGCATAT
AACAGGGTATTTCTGCGAGCAAGCTAGATTTGTACTAGGCAATCCGAAAA
ACTTTCGCGACCATTCGGGCATCCTCATGCGGTGATACTGGTTATCCATA
TCGGTTTTCCCAACATATAATTTTTTACCGTGCGGTAAGTATAATTTAGC
TAGGTGTCCCGGATTAGGCAACTCTGCATCTGGCGCCGCTACGAAAGCCT
TATTCGCATTTCGAGCGTCAATGATCAGGCGCTGAACGCCTTTCTCTTTT
TTGGGGACCGCGAACACACCGTTAACAATTTCTGCTTGTTCCCTTTCCAT
TGAAATTATTCCGACTTCTTCGAGTTTTTTGATAAGCTTAACATATTCTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AGAAAGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1449814..1454723-

>Gvermi7656.t1 ID=Gvermi7656.t1|Name=Gvermi7656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=336bp|location=Sequence derived from alignment at ScGOVlb_64:1449814..1454723- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCTGTTCGATCAGGCGCTGTTGACCAGCTCCCTGCTCTTCACAT
CCCATGCAAATACGACGTGCGCACATCCGTTCCTAAGATCTACCGCCATA
ACGCTCAGGCCCAGAACGCCACTTTAACATGCGACAGACCTCCGCCCACA
AACCAGTCCGAGTCCCCAAAGTATCTCTGCGAGGTCGATATCACTGTTAT
CCGCAACCGTAACTGCACCCTGTTTATCACCGAGCGTTATCTCTTCCCGT
ACACAACCGGCCGAGATGCCAGGCGCGAAATCCCGCTCATCGAGCGGCAG
CAGACTGCCACAAACGTTGTCGCCAAACAAAGGTAA
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