Gvermi7653.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7653.t1
Unique NameGvermi7653.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1363940..1364821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5888.CAK81398
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K02218
KEGG Pathwayko04011,ko04392,map04011,map04392
Evalue1.57e-14
EggNOG OGsKOG1164@1|root,KOG1164@2759|Eukaryota
EC2.7.11.1
Descriptionprotein kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7653Gvermi7653Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1363940..1364821 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7653.t1.stop1Gvermi7653.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1363940..1363942 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7653.t1.CDS1Gvermi7653.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1363940..1364821 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7653.t1.exon1Gvermi7653.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1363940..1364821 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7653.t1.start1Gvermi7653.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1364819..1364821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7653.t1Gvermi7653.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1363940..1364821 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7653.t1 ID=Gvermi7653.t1|Name=Gvermi7653.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=294bp
MSSSNDSAEYTPPDFTGDTINDRWVVGEILGTGSVGAVYSVTDNTQEHAN
AVVKFAVVQSGDEEELQDAQDDLEEEYSNLRELNISAPNLKIPKAFAFGT
HNEFTYMVMSRFGDSVETAFGDAETGLSNAAIVVMTMQVFKTVRALHNLN
FKHGDIKEGNVVRGYTADEKDQWFLIDFGLGGVLNAYSQINDVGDLIQMM
VRLFRNGEEGLIPEGELSEYLWYNLSDDQMAVVKNNFEKAVATRNDKGQP
IPENIKILVDEAISMQPPNYERMNTLLQQTIDQIVDPNQNLFD*
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spliced messenger RNA

>Gvermi7653.t1 ID=Gvermi7653.t1|Name=Gvermi7653.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=882bp|location=Sequence derived from alignment at ScGOVlb_64:1363940..1364821- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCTTCTAACGATTCGGCAGAGTACACGCCTCCTGACTTTACTGG
AGATACAATAAACGACAGATGGGTTGTTGGTGAGATCTTGGGCACAGGAT
CCGTTGGTGCGGTTTACTCTGTAACAGATAACACTCAAGAGCATGCAAAT
GCGGTAGTCAAATTTGCAGTGGTTCAGAGCGGCGACGAGGAAGAGCTGCA
AGATGCTCAGGATGACTTAGAGGAAGAGTACAGCAACCTGCGAGAGTTGA
ACATTAGTGCGCCAAATCTAAAAATTCCCAAAGCTTTTGCGTTTGGAACT
CACAACGAGTTCACTTACATGGTGATGAGCAGATTTGGAGACTCTGTAGA
AACAGCATTCGGTGACGCAGAAACAGGTCTTTCAAACGCAGCCATCGTAG
TGATGACTATGCAGGTTTTCAAGACTGTGAGGGCGCTGCATAATTTGAAC
TTTAAGCACGGGGATATCAAAGAAGGAAATGTAGTGCGCGGATACACCGC
AGATGAGAAAGATCAATGGTTTTTGATTGATTTTGGTTTGGGCGGGGTTC
TGAACGCCTACAGTCAGATCAACGATGTTGGCGATTTGATTCAGATGATG
GTGAGGCTGTTTCGCAATGGCGAGGAAGGTCTGATTCCTGAAGGGGAGCT
TAGCGAGTACTTATGGTACAATCTCTCGGATGACCAAATGGCTGTTGTCA
AGAACAACTTTGAAAAGGCTGTTGCAACGAGAAATGACAAGGGGCAGCCA
ATTCCGGAAAACATCAAAATTTTGGTGGACGAGGCAATTTCCATGCAGCC
GCCGAACTATGAGCGCATGAATACGTTGTTGCAGCAGACGATTGACCAAA
TTGTAGATCCGAACCAGAACCTGTTTGACTAA
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protein sequence of Gvermi7653.t1

>Gvermi7653.t1 ID=Gvermi7653.t1|Name=Gvermi7653.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=294bp
MSSSNDSAEYTPPDFTGDTINDRWVVGEILGTGSVGAVYSVTDNTQEHAN
AVVKFAVVQSGDEEELQDAQDDLEEEYSNLRELNISAPNLKIPKAFAFGT
HNEFTYMVMSRFGDSVETAFGDAETGLSNAAIVVMTMQVFKTVRALHNLN
FKHGDIKEGNVVRGYTADEKDQWFLIDFGLGGVLNAYSQINDVGDLIQMM
VRLFRNGEEGLIPEGELSEYLWYNLSDDQMAVVKNNFEKAVATRNDKGQP
IPENIKILVDEAISMQPPNYERMNTLLQQTIDQIVDPNQNLFD*
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mRNA from alignment at ScGOVlb_64:1363940..1364821-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7653.t1 ID=Gvermi7653.t1|Name=Gvermi7653.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=882bp|location=Sequence derived from alignment at ScGOVlb_64:1363940..1364821- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCTCTTCTAACGATTCGGCAGAGTACACGCCTCCTGACTTTACTGG
AGATACAATAAACGACAGATGGGTTGTTGGTGAGATCTTGGGCACAGGAT
CCGTTGGTGCGGTTTACTCTGTAACAGATAACACTCAAGAGCATGCAAAT
GCGGTAGTCAAATTTGCAGTGGTTCAGAGCGGCGACGAGGAAGAGCTGCA
AGATGCTCAGGATGACTTAGAGGAAGAGTACAGCAACCTGCGAGAGTTGA
ACATTAGTGCGCCAAATCTAAAAATTCCCAAAGCTTTTGCGTTTGGAACT
CACAACGAGTTCACTTACATGGTGATGAGCAGATTTGGAGACTCTGTAGA
AACAGCATTCGGTGACGCAGAAACAGGTCTTTCAAACGCAGCCATCGTAG
TGATGACTATGCAGGTTTTCAAGACTGTGAGGGCGCTGCATAATTTGAAC
TTTAAGCACGGGGATATCAAAGAAGGAAATGTAGTGCGCGGATACACCGC
AGATGAGAAAGATCAATGGTTTTTGATTGATTTTGGTTTGGGCGGGGTTC
TGAACGCCTACAGTCAGATCAACGATGTTGGCGATTTGATTCAGATGATG
GTGAGGCTGTTTCGCAATGGCGAGGAAGGTCTGATTCCTGAAGGGGAGCT
TAGCGAGTACTTATGGTACAATCTCTCGGATGACCAAATGGCTGTTGTCA
AGAACAACTTTGAAAAGGCTGTTGCAACGAGAAATGACAAGGGGCAGCCA
ATTCCGGAAAACATCAAAATTTTGGTGGACGAGGCAATTTCCATGCAGCC
GCCGAACTATGAGCGCATGAATACGTTGTTGCAGCAGACGATTGACCAAA
TTGTAGATCCGAACCAGAACCTGTTTGACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1363940..1364821-

>Gvermi7653.t1 ID=Gvermi7653.t1|Name=Gvermi7653.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=882bp|location=Sequence derived from alignment at ScGOVlb_64:1363940..1364821- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCTCTTCTAACGATTCGGCAGAGTACACGCCTCCTGACTTTACTGG
AGATACAATAAACGACAGATGGGTTGTTGGTGAGATCTTGGGCACAGGAT
CCGTTGGTGCGGTTTACTCTGTAACAGATAACACTCAAGAGCATGCAAAT
GCGGTAGTCAAATTTGCAGTGGTTCAGAGCGGCGACGAGGAAGAGCTGCA
AGATGCTCAGGATGACTTAGAGGAAGAGTACAGCAACCTGCGAGAGTTGA
ACATTAGTGCGCCAAATCTAAAAATTCCCAAAGCTTTTGCGTTTGGAACT
CACAACGAGTTCACTTACATGGTGATGAGCAGATTTGGAGACTCTGTAGA
AACAGCATTCGGTGACGCAGAAACAGGTCTTTCAAACGCAGCCATCGTAG
TGATGACTATGCAGGTTTTCAAGACTGTGAGGGCGCTGCATAATTTGAAC
TTTAAGCACGGGGATATCAAAGAAGGAAATGTAGTGCGCGGATACACCGC
AGATGAGAAAGATCAATGGTTTTTGATTGATTTTGGTTTGGGCGGGGTTC
TGAACGCCTACAGTCAGATCAACGATGTTGGCGATTTGATTCAGATGATG
GTGAGGCTGTTTCGCAATGGCGAGGAAGGTCTGATTCCTGAAGGGGAGCT
TAGCGAGTACTTATGGTACAATCTCTCGGATGACCAAATGGCTGTTGTCA
AGAACAACTTTGAAAAGGCTGTTGCAACGAGAAATGACAAGGGGCAGCCA
ATTCCGGAAAACATCAAAATTTTGGTGGACGAGGCAATTTCCATGCAGCC
GCCGAACTATGAGCGCATGAATACGTTGTTGCAGCAGACGATTGACCAAA
TTGTAGATCCGAACCAGAACCTGTTTGACTAA
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