Gvermi765.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi765.t1
Unique Name	Gvermi765.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	611

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2952	contig	ScGOVlb_2952:2..2752 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	400682.PAC_15712703
PFAMs	RVT_1,SCAN,rve,zf-CCHC,zf-H2C2
Max annot lvl	33208\|Metazoa
Evalue	1.13e-100
EggNOG OGs	COG2801@1\|root,KOG1721@1\|root,KOG0017@2759\|Eukaryota,KOG1721@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa
Description	K02A2.6-like
COG category	OU

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi765	Gvermi765	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2952 2..2752 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi765.t1	Gvermi765.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2952 2..2752 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi765.t1.CDS1	Gvermi765.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2952 2..659 +
Gvermi765.t1.CDS2	Gvermi765.t1.CDS2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2952 743..1879 +
Gvermi765.t1.CDS3	Gvermi765.t1.CDS3	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2952 2716..2752 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi765.t1.exon1	Gvermi765.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2952 2..659 +
Gvermi765.t1.exon2	Gvermi765.t1.exon2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2952 743..1879 +
Gvermi765.t1.exon3	Gvermi765.t1.exon3	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2952 2716..2752 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi765.t1.intron1	Gvermi765.t1.intron1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	intron	ScGOVlb_2952 660..742 +
Gvermi765.t1.intron2	Gvermi765.t1.intron2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	intron	ScGOVlb_2952 1880..2715 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi765.t1.stop1	Gvermi765.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2952 2750..2752 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2952:2..2752+
coding sequence from alignment at ScGOVlb_2952:2..2752+

mRNA sequence

>Gvermi765.t1 ID=Gvermi765.t1|Name=Gvermi765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=611bp
XPTPSGTDVPNSSGDATPTSSEDRPESPGDHLKDPVQELEQLGLSHVPGL
HRDRLRHMLREFTPMWDESLGKIAIAEHRIDLLPNTRPIAQPPYRAGPTA
REEKKAQVEKMLRAGVIEPAQSPWASPVVLAPKPDGSWRFCIDYRKFNAA
TVKDVYPIPRMHECIDSLGKAKVFTTLDANWGYWQVPIQEEERDKTAFVC
HQGLYRFNRMPFGLTNAPATDLDIHLTHVRDVLRVLRDAGITLKLGKCEF
FPDTVKYLGHIIRPGRRSVDAARVKSLKQAKHPQTQTELRSFLGLCNVYR
RFIPRFADTAAPLNELLRKGQPVKLEAFDDRQASAFTSLIEAVTLPPILT
LPRAGLTYAVDMDASNFRIGCALFQNTESYKRMPLGFWSRSLNVHERNNS
VPEKECLAEVWALQTLRPYLMGSHFVVHTDHSALRWLLSIADPSGRLMRW
RLRLAEFTFDVQYKKGTLNTQADALSRLPTAAEAKPDGDLEIPCFLAEDS
HNEAESDSEGWDICEAVLAVSDTDSVPGSSVPVTPEELLREQHTDPSCRE
IRSRVNGGAQLPFVEDDKGILVRTVSARPQIVVPHSLQSRVLRLSHYANA
ANIVRLRRST*

spliced messenger RNA

>Gvermi765.t1 ID=Gvermi765.t1|Name=Gvermi765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1832bp|location=Sequence derived from alignment at ScGOVlb_2952:2..2752+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
GGCCGACaccgtcgggaacggatgttccgaactcgtcgggagacgccacg
ccgacctcgtcggaagataggccagaatcccctggggatcatttgaaaga
tcccgtacaggaactggagcaattaggcctgagccatgtgccagggttgc
accgtgatcgtttacggcatatgcttcgtgagttcacgcccatgtgggac
gagtcccttgggaaaatcgcgattgccgaacatcggattgatctacttcc
gaatactcggccaattgcgcaacccccttacagggcaggaccgacagctc
gggaagaaaaaaaggcccaagttgagaagatgctccgggccggagtcatt
gagcctgctcaatcgccatgggcttcgcccgtggtcctggcgcccaagcc
tgatgggtcctggagattctgtatcgactaccgcaagttcaacgcggcga
ccgtgaaggacgtttatcctatcccacggatgcacgaatgcatcgattcg
ttgggaaaggcaaaggtgttcaccaccctggacgccaattggggatattg
gcaggtgcccattcaggaagaggaacgtgataaaacggctttcgtttgcc
atcaggggctgtaccgattcaatcggatgccctttggtctcacaaacgcg
cccgccactgacctggacatccacctaacccatgtacgggacgtgctgcg
agtcctgcgggatgcaggcataaccctcaagttgggcaaatgcgagttct
ttcccgatacggtcaaatacctcggtcatattatccgtccgggacggcgg
tcggtcgatgctgctcgtgtgaagtccttgaaacaggctaagcacccgca
gactcaaacggaactccgatcatttctcggtctgtgcaatgtgtatcgcc
gcttcataccgcggtttgcggacaccgccgcaccgttgaatgaactccta
cggaaaggtcagccagtgaaactggaagcgttcgacgaccgacaagcatc
ggcattcacttcgctgattgaggccgtaacgttgccgccgatactgaccc
tgccgagagctgggctaacgtatgccgttgacatggacgcgagcaacttc
cggattggatgtgccctctttcagaacacagagagttacaagcgaatgcc
acttgggttttggtctcgaagcctcaacgttcacgagaggaataattcag
tccccgagaaggagtgtcttgcagaggtctgggccctgcagacgttgaga
ccctacttgatgggcagtcactttgtagtgcataccgatcattcggccct
tcgatggctgctttctattgcagacccatctggccgcttgatgcggtggc
gccttcgtctggcggagttcacgtttgacgtgcaatacaagaaagggacc
ctgaatacccaggccgatgccctttcccgcttgccaacagcggccgaagc
aaagccagacggtgacctggaaattccgtgcttcttggcggaagacagtc
ataatgaagccgaaagcgattcggaaggttgggacatctgcgaagcagta
ctggccgtttcagacacggactctgtaccgggatcttctgtcccggttac
gccggaagaattactccgggagcagcacacggacccgtcatgtcgggaga
ttcgtagccgtgtcaacggtggagcgcagctgcccttcgtcgaggacgac
aagggaattctagtccgaacagtctcggcccgaccacaaatcgtggtgcc
gcactcgcttcaatcgcgagtattgcgcttgtcgcattatgcgaatgcgg
ccaacatcgtgcggttaagacgctcaacctga

protein sequence of Gvermi765.t1

>Gvermi765.t1 ID=Gvermi765.t1|Name=Gvermi765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=611bp
XPTPSGTDVPNSSGDATPTSSEDRPESPGDHLKDPVQELEQLGLSHVPGL
HRDRLRHMLREFTPMWDESLGKIAIAEHRIDLLPNTRPIAQPPYRAGPTA
REEKKAQVEKMLRAGVIEPAQSPWASPVVLAPKPDGSWRFCIDYRKFNAA
TVKDVYPIPRMHECIDSLGKAKVFTTLDANWGYWQVPIQEEERDKTAFVC
HQGLYRFNRMPFGLTNAPATDLDIHLTHVRDVLRVLRDAGITLKLGKCEF
FPDTVKYLGHIIRPGRRSVDAARVKSLKQAKHPQTQTELRSFLGLCNVYR
RFIPRFADTAAPLNELLRKGQPVKLEAFDDRQASAFTSLIEAVTLPPILT
LPRAGLTYAVDMDASNFRIGCALFQNTESYKRMPLGFWSRSLNVHERNNS
VPEKECLAEVWALQTLRPYLMGSHFVVHTDHSALRWLLSIADPSGRLMRW
RLRLAEFTFDVQYKKGTLNTQADALSRLPTAAEAKPDGDLEIPCFLAEDS
HNEAESDSEGWDICEAVLAVSDTDSVPGSSVPVTPEELLREQHTDPSCRE
IRSRVNGGAQLPFVEDDKGILVRTVSARPQIVVPHSLQSRVLRLSHYANA
ANIVRLRRST*

mRNA from alignment at ScGOVlb_2952:2..2752+

Legend: polypeptideCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi765.t1 ID=Gvermi765.t1|Name=Gvermi765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2751bp|location=Sequence derived from alignment at ScGOVlb_2952:2..2752+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GGCCGACaccgtcgggaacggatgttccgaactcgtcgggagacgccacg
ccgacctcgtcggaagataggccagaatcccctggggatcatttgaaaga
tcccgtacaggaactggagcaattaggcctgagccatgtgccagggttgc
accgtgatcgtttacggcatatgcttcgtgagttcacgcccatgtgggac
gagtcccttgggaaaatcgcgattgccgaacatcggattgatctacttcc
gaatactcggccaattgcgcaacccccttacagggcaggaccgacagctc
gggaagaaaaaaaggcccaagttgagaagatgctccgggccggagtcatt
gagcctgctcaatcgccatgggcttcgcccgtggtcctggcgcccaagcc
tgatgggtcctggagattctgtatcgactaccgcaagttcaacgcggcga
ccgtgaaggacgtttatcctatcccacggatgcacgaatgcatcgattcg
ttgggaaaggcaaaggtgttcaccaccctggacgccaattggggatattg
gcaggtgcccattcaggaagaggaacgtgataaaacggctttcgtttgcc
atcaggggctgtaccgattcaatcggatgccctttggtctcacaaacgcg
cccgccacgtttcaacgagcagtggacatattgttagccacaagtggaaa
acttgcctggtctacctggacgacatcattgtcttctccagtgacctgga
catccacctaacccatgtacgggacgtgctgcgagtcctgcgggatgcag
gcataaccctcaagttgggcaaatgcgagttctttcccgatacggtcaaa
tacctcggtcatattatccgtccgggacggcggtcggtcgatgctgctcg
tgtgaagtccttgaaacaggctaagcacccgcagactcaaacggaactcc
gatcatttctcggtctgtgcaatgtgtatcgccgcttcataccgcggttt
gcggacaccgccgcaccgttgaatgaactcctacggaaaggtcagccagt
gaaactggaagcgttcgacgaccgacaagcatcggcattcacttcgctga
ttgaggccgtaacgttgccgccgatactgaccctgccgagagctgggcta
acgtatgccgttgacatggacgcgagcaacttccggattggatgtgccct
ctttcagaacacagagagttacaagcgaatgccacttgggttttggtctc
gaagcctcaacgttcacgagaggaataattcagtccccgagaaggagtgt
cttgcagaggtctgggccctgcagacgttgagaccctacttgatgggcag
tcactttgtagtgcataccgatcattcggcccttcgatggctgctttcta
ttgcagacccatctggccgcttgatgcggtggcgccttcgtctggcggag
ttcacgtttgacgtgcaatacaagaaagggaccctgaatacccaggccga
tgccctttcccgcttgccaacagcggccgaagcaaagccagacggtgacc
tggaaattccgtgcttcttggcggaagacagtcataatgaagccgaaagc
gattcggaaggttgggacatctgcgaagcagtactggccgtttcagacac
ggactctgtaccgggatcttctgtcccggttacgccggaagaattactcc
gggagcagcacacggacccgtcatgtcgggagattcgtagccgtgtcaac
ggtggagcgcagctgcccttcgtcgaggacgacaagggaattctagtccg
aacagtctcggcccgaccacaaatcgtggtgccgcactcgcttcaatcgc
gagtattgcgcttgtcgcattatgcgaagttgtcagcccaccctgggggt
cggaagatgtattacaccctcaggagggacttttactggccNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcaccagag
cggtaggacggtccgatgacggcgtgaccgatactgccggcaagtcagcc
agtccgcgagtagaatgcgggaggacagacggggatggcgacgcgtccgt
agtagcggcggcctccattggagtgccgtccgacaaagtcggaccaacga
cctgaataggcggccgtggcgcgggtgttacgcgatccaacgaaatgcgc
tcaagcgcgcccttgatatcaaggagtaccgttgtgtcagtcgtagcaat
cacccgatagggtccgttcgcaaccggcgacagcttatgccggcgttcct
tctccggattataatattccttccggacgaaggcgaagtccccagaactg
agctcaggggcgttcttgcacacccgtgcgtcgaagttacgcttgtatgc
ggcctgcgcttttgcgatttgttccccaacttttgggactattcgcgtca
gccagtccttccaggcagccctgtgaaggcgcggcgatgggaacttgttc
agcgtaggctgggactcgatggccaccgatggtggaactttcgacagtac
caagtcgaacggagcgatttgtgtcgtgcgatggacctgtatattgtagg
cgtaggtcaccgcgtcggtgaacagatcccagtctgacggatgatcgacc
acggacgtccgtagtgcggccaacatcgtgcggttaagacgctcaacctg
a

Coding sequence (CDS) from alignment at ScGOVlb_2952:2..2752+

>Gvermi765.t1 ID=Gvermi765.t1|Name=Gvermi765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1832bp|location=Sequence derived from alignment at ScGOVlb_2952:2..2752+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GGCCGACaccgtcgggaacggatgttccgaactcgtcgggagacgccacg
ccgacctcgtcggaagataggccagaatcccctggggatcatttgaaaga
tcccgtacaggaactggagcaattaggcctgagccatgtgccagggttgc
accgtgatcgtttacggcatatgcttcgtgagttcacgcccatgtgggac
gagtcccttgggaaaatcgcgattgccgaacatcggattgatctacttcc
gaatactcggccaattgcgcaacccccttacagggcaggaccgacagctc
gggaagaaaaaaaggcccaagttgagaagatgctccgggccggagtcatt
gagcctgctcaatcgccatgggcttcgcccgtggtcctggcgcccaagcc
tgatgggtcctggagattctgtatcgactaccgcaagttcaacgcggcga
ccgtgaaggacgtttatcctatcccacggatgcacgaatgcatcgattcg
ttgggaaaggcaaaggtgttcaccaccctggacgccaattggggatattg
gcaggtgcccattcaggaagaggaacgtgataaaacggctttcgtttgcc
atcaggggctgtaccgattcaatcggatgccctttggtctcacaaacgcg
cccgccactgacctggacatccacctaacccatgtacgggacgtgctgcg
agtcctgcgggatgcaggcataaccctcaagttgggcaaatgcgagttct
ttcccgatacggtcaaatacctcggtcatattatccgtccgggacggcgg
tcggtcgatgctgctcgtgtgaagtccttgaaacaggctaagcacccgca
gactcaaacggaactccgatcatttctcggtctgtgcaatgtgtatcgcc
gcttcataccgcggtttgcggacaccgccgcaccgttgaatgaactccta
cggaaaggtcagccagtgaaactggaagcgttcgacgaccgacaagcatc
ggcattcacttcgctgattgaggccgtaacgttgccgccgatactgaccc
tgccgagagctgggctaacgtatgccgttgacatggacgcgagcaacttc
cggattggatgtgccctctttcagaacacagagagttacaagcgaatgcc
acttgggttttggtctcgaagcctcaacgttcacgagaggaataattcag
tccccgagaaggagtgtcttgcagaggtctgggccctgcagacgttgaga
ccctacttgatgggcagtcactttgtagtgcataccgatcattcggccct
tcgatggctgctttctattgcagacccatctggccgcttgatgcggtggc
gccttcgtctggcggagttcacgtttgacgtgcaatacaagaaagggacc
ctgaatacccaggccgatgccctttcccgcttgccaacagcggccgaagc
aaagccagacggtgacctggaaattccgtgcttcttggcggaagacagtc
ataatgaagccgaaagcgattcggaaggttgggacatctgcgaagcagta
ctggccgtttcagacacggactctgtaccgggatcttctgtcccggttac
gccggaagaattactccgggagcagcacacggacccgtcatgtcgggaga
ttcgtagccgtgtcaacggtggagcgcagctgcccttcgtcgaggacgac
aagggaattctagtccgaacagtctcggcccgaccacaaatcgtggtgcc
gcactcgcttcaatcgcgagtattgcgcttgtcgcattatgcgaatgcgg
ccaacatcgtgcggttaagacgctcaacctga