Gvermi7646.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7646.t1
Unique NameGvermi7646.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1197951..1202331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7646Gvermi7646Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1197951..1202331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7646.t1Gvermi7646.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1197951..1202331 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7646.t1.stop1Gvermi7646.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1197951..1197953 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7646.t1.CDS1Gvermi7646.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1197951..1198133 -
Gvermi7646.t1.CDS2Gvermi7646.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1201717..1202331 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7646.t1.exon1Gvermi7646.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1197951..1198133 -
Gvermi7646.t1.exon2Gvermi7646.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1201717..1202331 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7646.t1.intron1Gvermi7646.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1198134..1201716 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7646.t1.start1Gvermi7646.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1202329..1202331 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7646.t1 ID=Gvermi7646.t1|Name=Gvermi7646.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=266bp
MCVSEFGDVVQCPFVPTQKVHILHGNRSQFGDVRIKKAWEVTDIDEKALE
TFKVVNFQQTNPVCKAESIFLWRPEQSFGGNAISNDKVVSGQPLEDVGTS
SSSSFGWQGNEGGQFPTSHGGTEANQGISVGASGVSTGSGGNASKESTEP
SVSGLEGSGASSINDTFENDLNESGASTGHGPGMDIGSDEGFGMGGGDDV
ESIGGGGFVRGFGRSIATEAEAFGVKGNSSALDPMKPMETIAESLTATGA
SDEYISALQDVKDDP*
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spliced messenger RNA

>Gvermi7646.t1 ID=Gvermi7646.t1|Name=Gvermi7646.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=798bp|location=Sequence derived from alignment at ScGOVlb_64:1197951..1202331- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGTTTCTGAATTCGGAGATGTAGTACAATGCCCTTTTGTTCCGAC
CCAAAAAGTGCACATTCTCCACGGCAATCGATCGCAATTTGGAGATGTAA
GAATAAAGAAGGCATGGGAAGTAACGGACATCGACGAAAAGGCACTCGAG
ACATTTAAGGTGGTGAACTTCCAGCAGACCAATCCAGTTTGTAAAGCCGA
GAGTATATTCTTATGGAGGCCGGAACAATCCTTTGGAGGCAATGCGATCA
GTAATGATAAAGTTGTCTCAGGGCAGCCTTTGGAGGATGTAGGCACTTCT
TCTTCCTCTTCTTTTGGGTGGCAAGGCAACGAAGGTGGACAATTTCCTAC
ATCTCACGGAGGCACTGAAGCAAATCAGGGCATCTCAGTTGGCGCGAGCG
GTGTTTCCACTGGTTCGGGGGGAAATGCTAGTAAGGAAAGCACAGAACCC
TCCGTATCTGGACTTGAAGGTTCCGGAGCATCGAGCATTAATGATACTTT
TGAGAATGATTTGAATGAAAGCGGCGCTTCCACTGGCCACGGACCTGGTA
TGGATATTGGGAGTGATGAGGGCTTCGGCATGGGAGGTGGCGATGACGTT
GAAAGTATCGGCGGAGGTGGATTTGTTAGAGGCTTTGGTCGGTCAATTGC
AACGGAAGCCGAAGCCTTTGGTGTAAAGGGAAATAGTTCTGCACTGGATC
CCATGAAGCCGATGGAAACAATTGCAGAATCTTTGACAGCCACCGGAGCA
TCGGATGAGTATATTTCTGCATTGCAAGATGTGAAGGATGACCCCTAG
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protein sequence of Gvermi7646.t1

>Gvermi7646.t1 ID=Gvermi7646.t1|Name=Gvermi7646.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=266bp
MCVSEFGDVVQCPFVPTQKVHILHGNRSQFGDVRIKKAWEVTDIDEKALE
TFKVVNFQQTNPVCKAESIFLWRPEQSFGGNAISNDKVVSGQPLEDVGTS
SSSSFGWQGNEGGQFPTSHGGTEANQGISVGASGVSTGSGGNASKESTEP
SVSGLEGSGASSINDTFENDLNESGASTGHGPGMDIGSDEGFGMGGGDDV
ESIGGGGFVRGFGRSIATEAEAFGVKGNSSALDPMKPMETIAESLTATGA
SDEYISALQDVKDDP*
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mRNA from alignment at ScGOVlb_64:1197951..1202331-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7646.t1 ID=Gvermi7646.t1|Name=Gvermi7646.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=4381bp|location=Sequence derived from alignment at ScGOVlb_64:1197951..1202331- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCGTTTCTGAATTCGGAGATGTAGTACAATGCCCTTTTGTTCCGAC
CCAAAAAGTGCACATTCTCCACGGCAATCGATCGCAATTTGGAGATGTAA
GAATAAAGAAGGCATGGGAAGTAACGGACATCGACGAAAAGGCACTCGAG
ACATTTAAGGTGGTGAACTTCCAGCAGACCAATCCAGTTTGTAAAGCCGA
GAGTATATTCTTATGGAGGCCGGAACAATCCTTTGGAGGCAATGCGATCA
GTAATGATAAAGTTGTCTCAGGGCAGCCTTTGGAGGATGTAGGCACTTCT
TCTTCCTCTTCTTTTGGGTGGCAAGGCAACGAAGGTGGACAATTTCCTAC
ATCTCACGGAGGCACTGAAGCAAATCAGGGCATCTCAGTTGGCGCGAGCG
GTGTTTCCACTGGTTCGGGGGGAAATGCTAGTAAGGAAAGCACAGAACCC
TCCGTATCTGGACTTGAAGGTTCCGGAGCATCGAGCATTAATGATACTTT
TGAGAATGATTTGAATGAAAGCGGCGCTTCCACTGGCCACGGACCTGGTA
TGGATATTGGGAGTGATGAGGGCTTCGGCATGGGAGGTGGCGATGACGTT
GAAAGTATCGGCGGAGTCGGAGGTGTCGGCGGCGGCGGTGGCTTCGAATT
CTTCGGGGGAGGCCATGGTAGCCATGGAAGTAACGGTTTCTTTGAAGGTG
TCCCCTTCGGCGACGGTGGCATGGGAGGTAACGGAGGAGTTGGTGGTGGC
TTGCAGTCCTGCAGAGCACAATGGGTCGTCATTCATGGAAATGTTCGCAT
GTGCTGCAGATGATAGTCAACGTGACCATTTAAATGCAGTACATGTTAGT
TGTAACACCGATGGAGGTATTGGGCCACACAGAACCACAAAGATAGTCTA
CAAGCCACACTGTCGTCAAGTACTGTCTCGAAGACAGTCTTCAAGCTATA
CTGTCTGTGAGTATTGAATCGAATCAGGTCTTGTGAGTTTAAGCTAGATT
AGCAATCGCAGCGCATTATCTACTATTGAAGACGAAGAGTCTGTTGTTCT
TCTGCGAGAACCAGCTGAACCTCTTTTCGTATTGCATCTTCCGCTGCGCC
TTGTCACATTTTAAGTCGGAATAAATATAATCCGTCGCTGAAATCAACAA
CAAATTTGACGGTTCTTAGAACTAAAGTTCGGGACACCAGTTCTCGAACA
CATCGAAGTGAACATGTCTCGGAAGTACCGTTCAAGTACCGATATCAATT
CCATGCAAACGGCATTAACAGACCGTTTATGAGCTGGTCTCGGAATTGCA
TAATGAGAGCTCACTGCGCAACGGGCTCGCGTTTGCCGTTGCTGCGCAAT
TCTCGAAGGCGGAAAAGAAAAACGGTTGGGCTCCAGGGGAAGTGCTGCTG
TGATTTCGCTGATCGTTGTGGAAGTGCCTGTACTGCAGTCAAATTACTGT
ACGGGTGTTTAACATGGTAGCCGTGTAAAAGTAGGACGTGCGCAAGTTAT
TTTAAAAAAATAAAGGCGGTATCCGTATGGACGTAGAAAGTATCCTTTTC
CGGCCGGGTATGATGAATCGGTATGGGAAAATTTTGACAAATATTGAGGA
ATTGGTACTTTGTTGTACAGGTCTTCAAGAGTTTCGATTGATTGATTGAG
TTTCAGGAAGTCGGCTGAAGTCACGTAATATCAAACAGCGTTGAGTGTGT
CTGGTATTGCGATTGCAGGGTTCGTTTTGAAAAACAAAAAACCTCGAAAG
CCACCCTCATCGGCGCACAATATCGAGCTCCGTTATGGTGCGCTTCGAAT
TGAAGGCAAGAAGTGAGCTACTGCGTGCAACTTCGTGAAAAGCTCAAGGA
AACGAAAGCATTGTTCAGTTCTAGAGGTTGCACGGTCAATAAGATTGCCT
TCCAGTTCCCAAATTTGTGGTCGACGGCACAGTAACGTATAGAAAATCGG
GAGCAACAACTCATAAACGTTACGCACACCGTGAGGCCTTGACCCTTTAA
AGGTGGTATTTTGTTACTTCATGAAACGCTAAGTAGGAGCTCAAGTTAAG
CCAAACTACCCATTTGAAGATTAATTTTGAAGGTTCGAAGACTATATGAA
CCTTTCGGTCTAGAAGAAATTTTGAAACAGTTGTTTCAAGTTCCCCTGAG
AACTGGAAGCCATTTCTTAGCAGTGTGTTCTTTTGAATATCAAAAACAGA
CTTGATTAATAATATGTGGGCATGTTTCAAATTTCACTTTGTTTCAATTT
ACCGTGCCGGGAGAGGGTAACCTGAGAGAAGGAATTGTGCTCGTGTGAAA
ATAATTCAGGCTCAATTACAGTCACGTGGTTGGCCAATGATACGTCTTGA
TTACTTTTGAAGCCGGGCGGCACACCGCCGACACGTGCGCTTTGGGGTTC
AATTTAGTTTTCTTTCACAAAACACTTTTCCTTCGTCTACGAAACTATGC
AGAGCGGTAGATATCTGCAACGAGCTATTTAACAAAACTTCCAGATTGAA
GATCATACAGCCAAAAGCAGAAGCTTGGGCTTTGTAATTCATGCCGTCTG
TGCAATGAAGCTCATCCGAATAATGTACCTTCACCCTTCCAACATCGACG
CAAAAGCAAAAGCACTGGATGGCAGATGATTCAAATCTCGAAAGGTATGG
TATCAGGACACATAATTGGCCCTGATTTGATACCTGACGTGCTTTTAGTT
ATCGTTCAAGAAACTGTCATTGGAGAATGATAGTTGAGTTACCGAAAATG
TAATTTTTATGGGAACTACCGATAAGAGGAGCTTAACTACAGTCGCAAGT
GGTAGCCTCTCCTCTGCTGATAGAAACGCCCGATACCGTATGCGTCGTCG
CACTCTGTCTCAAATATCTAACCAATTTAAACACCCTACCCAACCATCCA
AGGAAGAAACCTGCAGTGCTTCGCCATGCTCCTACTCTGTGACAACTCTT
CAAAATGCAATCCAAACTCTCGGCGAACCTATGCAGATCTACTTTGTGTC
TGCAACCAACCACTGAACCGTGCCTTCGGGTATTCGTGTCACAAGTGGGA
ACTGATGAAAGTCACATTAAGCGTATTCATCACAATTTTCTTGATATGTG
TCTTTCATGTCAAAAATAAAAGTTTCATAACCCCAAAAACCGTACGAAAT
CCCAATATTATAAAATGTGGACATACATTCGCAGCCCTCTTGTTTTGGTC
TAAACGCTACTGTCAATAACCATGTTCTGCTTCAAGCATCGCCTACTTTG
CCATCGTCGAGTGTTCCTCATAGTCACTGTCTGTCGAATCGATGTTTTAC
CTTGTGCAGCAATGTCGGACACTACGAGAGTTTTATTTGAGCTACCTTAA
AGTCAGCTTCACCGTCTTATATTAACTTCGGCTATATCCTGTGACAACTG
CCTTCCACGCTTAATCCTGTTATGAACGAAAAGTAATCCAGATGTTCGTC
AGATTAGAGTTGAGTGTTTCTAGAGTTGGTTTCATATTCCTTCCTTTTGT
TGGAGCAAACTGCTCCTATTGCAATTGTGACAGCAATTTGTCCGAGATCC
AAAATCTCTACAGACAAAGACAACCAATTGCTTCCAAAAAATCACCGGGC
TAAAACCCCATCATCAACCGCAAGAGTTGACGCAAAAGTGAAAGACTTTT
CCGCATGTTGAATCGCTTCAGTAGGAATCGATTTCATAAGAGCTCAAGAC
TCGAGAGCTGTACCAGCCATGTTCTTTCCGATCAGGCACGCTACCAGCGG
CAAGCATTTTGCATTTACAACTGAAGTAAAAAAATCCACATCATTTACAC
AAGGAAATAGCGCAGGGCGCAGAAGGATGTCAGCTAATTGGTGCTTTCTC
CGTGCTCCCACTTACTCATGCAGGCATGAGGTTTTCTCTTCATCTCTTTT
AGCATCCACCATGGATCTCAGAATAATCTCTTCCAGCACATGAGAAAAAA
AAGAAGTGTGGAACACGGATCTCGATACCTCAGGGGTGAGTTGTACGACA
TGATTTCGCACTATAAAATGGTCAAATGATGAACAACTGCTGCAAATCTA
GAATTTCACCCTACCGTACTCTTGAAGAACAAGTGACGCTTTCCAGCATC
TTCTCTTTGTCTCATATGAGCCCTCTACATTTTTTCACAGACATAGGAAG
TCATTTCTAAACATGGCAAAAACTGATGTTTTTTGTGTTGATGCACAGGG
TGGATTTGTTAGAGGCTTTGGTCGGTCAATTGCAACGGAAGCCGAAGCCT
TTGGTGTAAAGGGAAATAGTTCTGCACTGGATCCCATGAAGCCGATGGAA
ACAATTGCAGAATCTTTGACAGCCACCGGAGCATCGGATGAGTATATTTC
TGCATTGCAAGATGTGAAGGATGACCCCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:1197951..1202331-

>Gvermi7646.t1 ID=Gvermi7646.t1|Name=Gvermi7646.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=798bp|location=Sequence derived from alignment at ScGOVlb_64:1197951..1202331- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCGTTTCTGAATTCGGAGATGTAGTACAATGCCCTTTTGTTCCGAC
CCAAAAAGTGCACATTCTCCACGGCAATCGATCGCAATTTGGAGATGTAA
GAATAAAGAAGGCATGGGAAGTAACGGACATCGACGAAAAGGCACTCGAG
ACATTTAAGGTGGTGAACTTCCAGCAGACCAATCCAGTTTGTAAAGCCGA
GAGTATATTCTTATGGAGGCCGGAACAATCCTTTGGAGGCAATGCGATCA
GTAATGATAAAGTTGTCTCAGGGCAGCCTTTGGAGGATGTAGGCACTTCT
TCTTCCTCTTCTTTTGGGTGGCAAGGCAACGAAGGTGGACAATTTCCTAC
ATCTCACGGAGGCACTGAAGCAAATCAGGGCATCTCAGTTGGCGCGAGCG
GTGTTTCCACTGGTTCGGGGGGAAATGCTAGTAAGGAAAGCACAGAACCC
TCCGTATCTGGACTTGAAGGTTCCGGAGCATCGAGCATTAATGATACTTT
TGAGAATGATTTGAATGAAAGCGGCGCTTCCACTGGCCACGGACCTGGTA
TGGATATTGGGAGTGATGAGGGCTTCGGCATGGGAGGTGGCGATGACGTT
GAAAGTATCGGCGGAGGTGGATTTGTTAGAGGCTTTGGTCGGTCAATTGC
AACGGAAGCCGAAGCCTTTGGTGTAAAGGGAAATAGTTCTGCACTGGATC
CCATGAAGCCGATGGAAACAATTGCAGAATCTTTGACAGCCACCGGAGCA
TCGGATGAGTATATTTCTGCATTGCAAGATGTGAAGGATGACCCCTAG
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