Gvermi7645.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7645.t1
Unique NameGvermi7645.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length490
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1195314..1197363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7645Gvermi7645Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1195314..1197363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7645.t1Gvermi7645.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1195314..1197363 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7645.t1.stop1Gvermi7645.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1195314..1195316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7645.t1.CDS1Gvermi7645.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1195314..1195422 -
Gvermi7645.t1.CDS2Gvermi7645.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1195573..1195915 -
Gvermi7645.t1.CDS3Gvermi7645.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1196178..1196564 -
Gvermi7645.t1.CDS4Gvermi7645.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1196733..1197363 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7645.t1.exon1Gvermi7645.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1195314..1195422 -
Gvermi7645.t1.exon2Gvermi7645.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1195573..1195915 -
Gvermi7645.t1.exon3Gvermi7645.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1196178..1196564 -
Gvermi7645.t1.exon4Gvermi7645.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1196733..1197363 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7645.t1.intron1Gvermi7645.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1195423..1195572 -
Gvermi7645.t1.intron2Gvermi7645.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1195916..1196177 -
Gvermi7645.t1.intron3Gvermi7645.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1196565..1196732 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7645.t1.start1Gvermi7645.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1197361..1197363 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7645.t1 ID=Gvermi7645.t1|Name=Gvermi7645.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=490bp
MLGKVSHGVQGVTGSYGVAMRSIHIAAGNEMISNAERRLQEKQIADEEYQ
TIMRNALFCTAQEVLGIGDGLNNICILVQEKLSKRVSTIAKAPARQAARV
GLRFALAVEEAFAIGMGSTSIVKNAIAADDARKSGNLGKAAIYGIMTSID
CVTVALDGVTMVLDFIPGIGTALSLVVDLINTVLAVINMVTGFFADMVDT
RTFTSMTRQTESDGSLIEILDGRQKDDLILAGVGAETLYGYAGDDILFGE
AGNVKLYGRPGNDFLNRSKSIDELIGGYGDNLLRSEPGIDAMGKRGKGND
TLQISPDFFPYSYVSFTNALVFLLGSIHSVYVNFSSRNDEGNRVIAKAIF
NVDDISPDLEFYRERDRCMAYSYDGKELEAMFVFALKRGGLISGIENVTE
TLLDDVGNNIDISTQVIGDEHVRLIDIGYGYNEYGYKEDGDTVVLISLSD
SAQWESNHANKNAWNISGESKVERGVFMEEYTDYSAFKF*
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spliced messenger RNA

>Gvermi7645.t1 ID=Gvermi7645.t1|Name=Gvermi7645.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at ScGOVlb_64:1195314..1197363- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGGGAAAGTAAGTCATGGTGTTCAAGGTGTAACTGGTAGTTACGG
GGTGGCTATGAGAAGCATCCATATAGCTGCTGGAAATGAAATGATTAGTA
ATGCAGAACGCCGTCTTCAAGAGAAGCAAATTGCAGACGAAGAGTATCAG
ACAATCATGCGCAATGCTCTGTTTTGCACGGCTCAAGAAGTGCTTGGAAT
TGGTGACGGACTCAATAATATCTGCATTCTGGTGCAGGAAAAACTCAGCA
AGAGAGTGAGCACAATTGCAAAAGCTCCTGCTCGTCAAGCAGCCCGTGTT
GGTCTTCGTTTTGCTTTAGCTGTAGAAGAAGCATTTGCAATTGGGATGGG
AAGTACGTCGATCGTCAAAAATGCGATAGCTGCAGATGATGCGCGGAAAA
GCGGAAATTTAGGAAAAGCTGCAATTTATGGGATCATGACCAGTATAGAT
TGTGTGACCGTCGCTTTAGATGGAGTGACCATGGTCCTCGACTTCATTCC
TGGTATCGGCACTGCATTGTCCCTTGTGGTCGATCTAATTAATACTGTCC
TCGCAGTCATCAATATGGTTACTGGATTCTTCGCAGACATGGTAGATACA
AGGACGTTTACATCGATGACCAGGCAGACAGAGAGTGATGGAAGCCTCAT
TGAAATATTAGATGGAAGGCAAAAAGACGACCTGATCCTGGCTGGTGTTG
GAGCAGAAACTCTTTACGGATATGCTGGTGATGATATTTTATTTGGGGAA
GCAGGAAATGTTAAACTCTACGGGAGGCCAGGAAATGACTTTTTGAATAG
GAGTAAATCTATCGATGAATTGATCGGTGGATATGGTGACAATTTGTTGC
GGTCCGAACCGGGAATCGATGCAATGGGCAAGAGAGGAAAGGGTAACGAC
ACTCTTCAGATTTCGCCTGATTTTTTCCCTTATAGTTATGTATCCTTCAC
AAATGCGCTTGTGTTCCTTCTTGGCTCTATCCATAGTGTTTATGTCAACT
TTTCTTCACGGAATGATGAAGGGAACAGGGTGATTGCAAAGGCCATATTT
AATGTGGATGACATCAGCCCTGATTTGGAGTTTTATAGAGAACGTGATCG
TTGCATGGCATATTCGTATGACGGGAAAGAACTGGAGGCAATGTTTGTTT
TTGCTTTAAAACGAGGAGGATTGATTTCAGGAATTGAAAATGTCACTGAA
ACATTATTGGATGACGTTGGGAACAATATCGACATCAGTACTCAGGTCAT
CGGTGATGAGCACGTTCGCTTGATAGATATCGGTTATGGGTATAATGAGT
ATGGATACAAAGAAGACGGAGACACAGTGGTGCTCATATCTCTATCAGAC
TCAGCCCAATGGGAATCAAATCATGCAAACAAGAATGCATGGAATATCTC
AGGTGAAAGCAAGGTTGAGCGAGGGGTATTCATGGAAGAATATACAGACT
ACTCAGCTTTTAAGTTCTAG
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protein sequence of Gvermi7645.t1

>Gvermi7645.t1 ID=Gvermi7645.t1|Name=Gvermi7645.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=490bp
MLGKVSHGVQGVTGSYGVAMRSIHIAAGNEMISNAERRLQEKQIADEEYQ
TIMRNALFCTAQEVLGIGDGLNNICILVQEKLSKRVSTIAKAPARQAARV
GLRFALAVEEAFAIGMGSTSIVKNAIAADDARKSGNLGKAAIYGIMTSID
CVTVALDGVTMVLDFIPGIGTALSLVVDLINTVLAVINMVTGFFADMVDT
RTFTSMTRQTESDGSLIEILDGRQKDDLILAGVGAETLYGYAGDDILFGE
AGNVKLYGRPGNDFLNRSKSIDELIGGYGDNLLRSEPGIDAMGKRGKGND
TLQISPDFFPYSYVSFTNALVFLLGSIHSVYVNFSSRNDEGNRVIAKAIF
NVDDISPDLEFYRERDRCMAYSYDGKELEAMFVFALKRGGLISGIENVTE
TLLDDVGNNIDISTQVIGDEHVRLIDIGYGYNEYGYKEDGDTVVLISLSD
SAQWESNHANKNAWNISGESKVERGVFMEEYTDYSAFKF*
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mRNA from alignment at ScGOVlb_64:1195314..1197363-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7645.t1 ID=Gvermi7645.t1|Name=Gvermi7645.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2050bp|location=Sequence derived from alignment at ScGOVlb_64:1195314..1197363- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGGGAAAGTAAGTCATGGTGTTCAAGGTGTAACTGGTAGTTACGG
GGTGGCTATGAGAAGCATCCATATAGCTGCTGGAAATGAAATGATTAGTA
ATGCAGAACGCCGTCTTCAAGAGAAGCAAATTGCAGACGAAGAGTATCAG
ACAATCATGCGCAATGCTCTGTTTTGCACGGCTCAAGAAGTGCTTGGAAT
TGGTGACGGACTCAATAATATCTGCATTCTGGTGCAGGAAAAACTCAGCA
AGAGAGTGAGCACAATTGCAAAAGCTCCTGCTCGTCAAGCAGCCCGTGTT
GGTCTTCGTTTTGCTTTAGCTGTAGAAGAAGCATTTGCAATTGGGATGGG
AAGTACGTCGATCGTCAAAAATGCGATAGCTGCAGATGATGCGCGGAAAA
GCGGAAATTTAGGAAAAGCTGCAATTTATGGGATCATGACCAGTATAGAT
TGTGTGACCGTCGCTTTAGATGGAGTGACCATGGTCCTCGACTTCATTCC
TGGTATCGGCACTGCATTGTCCCTTGTGGTCGATCTAATTAATACTGTCC
TCGCAGTCATCAATATGGTTACTGGATTCTTCGCAGACATGGTAGATACA
AGGACGTTTACATCGATGACCAGGCAGACAGGTATAAGGCAGAAGGATAT
GGTCTTTTCATATTTCTGACTGATGCCGCTGCCATTGGGCTTGCAGAAGA
AGGTGCATATGAAACTAGTGTTAAAGAGAAAATTGTGCGGCAACTTGGCG
AAAAAGCCAAAGCCAACGGAGAGGATCAAAGCCTTGGGATTGATCTGAGA
GAGTGATGGAAGCCTCATTGAAATATTAGATGGAAGGCAAAAAGACGACC
TGATCCTGGCTGGTGTTGGAGCAGAAACTCTTTACGGATATGCTGGTGAT
GATATTTTATTTGGGGAAGCAGGAAATGTTAAACTCTACGGGAGGCCAGG
AAATGACTTTTTGAATAGGAGTAAATCTATCGATGAATTGATCGGTGGAT
ATGGTGACAATTTGTTGCGGTCCGAACCGGGAATCGATGCAATGGGCAAG
AGAGGAAAGGGTAACGACACTCTTCAGATTTCGCCTGATTTTTTCCCTTA
TAGTTATGTATCCTTCACAAATGCGCTTGTGTTCCTTCTTGGCTCTATCC
ATAGTGTTTATGTCAACTTTTCTTCACGGAATGATGGTGAAGGTTTTGGT
GATATTTCTCTTGGAGTATCGACAAACAACTTTGAAGAACTATGGAACGC
AAAGCACAAGACTGCTTTTAATTCAAACTCGGAGATGGCAAGGAGATTTG
TGGACATTTTCTTTAACCCGAAACAGGGAGACGACAATATCCAATGAAAC
CCTCAACGGAACGTTCTTGTGGTATCTTCTCAACAAGAGCCACTAAGATT
ATTTTACGGATGGTCATTTCTTCTGTGCATGTGACGAATGGGCCACAGAA
GGGAACAGGGTGATTGCAAAGGCCATATTTAATGTGGATGACATCAGCCC
TGATTTGGAGTTTTATAGAGAACGTGATCGTTGCATGGCATATTCGTATG
ACGGGAAAGAACTGGAGGCAATGTTTGTTTTTGCTTTAAAACGAGGAGGA
TTGATTTCAGGAATTGAAAATGTCACTGAAACATTATTGGATGACGTTGG
GAACAATATCGACATCAGTACTCAGGTCATCGGTGATGAGCACGTTCGCT
TGATAGATATCGGTTATGGGTATAATGAGTATGGATACAAAGAAGACGGA
GACACAGTGGTGCTCATATCTCTATCAGACTCAGCCCAATGGTAAATATG
CAAGTATGTTGTTGGGGGATCAGGAAACGTTAAGTTAGTTATTAACGATG
GAAACAGATCGGCTTCTCGCCCGAGCGGAAGGAATGCAATAAGTCAAATT
CTACTTCTTGATCATAACATTGACTTGCGTCTCGCAAACAGGGAATCAAA
TCATGCAAACAAGAATGCATGGAATATCTCAGGTGAAAGCAAGGTTGAGC
GAGGGGTATTCATGGAAGAATATACAGACTACTCAGCTTTTAAGTTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:1195314..1197363-

>Gvermi7645.t1 ID=Gvermi7645.t1|Name=Gvermi7645.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1470bp|location=Sequence derived from alignment at ScGOVlb_64:1195314..1197363- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGGGAAAGTAAGTCATGGTGTTCAAGGTGTAACTGGTAGTTACGG
GGTGGCTATGAGAAGCATCCATATAGCTGCTGGAAATGAAATGATTAGTA
ATGCAGAACGCCGTCTTCAAGAGAAGCAAATTGCAGACGAAGAGTATCAG
ACAATCATGCGCAATGCTCTGTTTTGCACGGCTCAAGAAGTGCTTGGAAT
TGGTGACGGACTCAATAATATCTGCATTCTGGTGCAGGAAAAACTCAGCA
AGAGAGTGAGCACAATTGCAAAAGCTCCTGCTCGTCAAGCAGCCCGTGTT
GGTCTTCGTTTTGCTTTAGCTGTAGAAGAAGCATTTGCAATTGGGATGGG
AAGTACGTCGATCGTCAAAAATGCGATAGCTGCAGATGATGCGCGGAAAA
GCGGAAATTTAGGAAAAGCTGCAATTTATGGGATCATGACCAGTATAGAT
TGTGTGACCGTCGCTTTAGATGGAGTGACCATGGTCCTCGACTTCATTCC
TGGTATCGGCACTGCATTGTCCCTTGTGGTCGATCTAATTAATACTGTCC
TCGCAGTCATCAATATGGTTACTGGATTCTTCGCAGACATGGTAGATACA
AGGACGTTTACATCGATGACCAGGCAGACAGAGAGTGATGGAAGCCTCAT
TGAAATATTAGATGGAAGGCAAAAAGACGACCTGATCCTGGCTGGTGTTG
GAGCAGAAACTCTTTACGGATATGCTGGTGATGATATTTTATTTGGGGAA
GCAGGAAATGTTAAACTCTACGGGAGGCCAGGAAATGACTTTTTGAATAG
GAGTAAATCTATCGATGAATTGATCGGTGGATATGGTGACAATTTGTTGC
GGTCCGAACCGGGAATCGATGCAATGGGCAAGAGAGGAAAGGGTAACGAC
ACTCTTCAGATTTCGCCTGATTTTTTCCCTTATAGTTATGTATCCTTCAC
AAATGCGCTTGTGTTCCTTCTTGGCTCTATCCATAGTGTTTATGTCAACT
TTTCTTCACGGAATGATGAAGGGAACAGGGTGATTGCAAAGGCCATATTT
AATGTGGATGACATCAGCCCTGATTTGGAGTTTTATAGAGAACGTGATCG
TTGCATGGCATATTCGTATGACGGGAAAGAACTGGAGGCAATGTTTGTTT
TTGCTTTAAAACGAGGAGGATTGATTTCAGGAATTGAAAATGTCACTGAA
ACATTATTGGATGACGTTGGGAACAATATCGACATCAGTACTCAGGTCAT
CGGTGATGAGCACGTTCGCTTGATAGATATCGGTTATGGGTATAATGAGT
ATGGATACAAAGAAGACGGAGACACAGTGGTGCTCATATCTCTATCAGAC
TCAGCCCAATGGGAATCAAATCATGCAAACAAGAATGCATGGAATATCTC
AGGTGAAAGCAAGGTTGAGCGAGGGGTATTCATGGAAGAATATACAGACT
ACTCAGCTTTTAAGTTCTAG
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