Gvermi7644.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7644.t1
Unique NameGvermi7644.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length581
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1192021..1195138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7644Gvermi7644Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1192021..1195138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7644.t1Gvermi7644.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1192021..1195138 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7644.t1.stop1Gvermi7644.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1192021..1192023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7644.t1.CDS1Gvermi7644.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1192021..1192402 -
Gvermi7644.t1.CDS2Gvermi7644.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1192903..1193561 -
Gvermi7644.t1.CDS3Gvermi7644.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1193667..1194032 -
Gvermi7644.t1.CDS4Gvermi7644.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1194803..1195138 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7644.t1.exon1Gvermi7644.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1192021..1192402 -
Gvermi7644.t1.exon2Gvermi7644.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1192903..1193561 -
Gvermi7644.t1.exon3Gvermi7644.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1193667..1194032 -
Gvermi7644.t1.exon4Gvermi7644.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1194803..1195138 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7644.t1.intron1Gvermi7644.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1192403..1192902 -
Gvermi7644.t1.intron2Gvermi7644.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1193562..1193666 -
Gvermi7644.t1.intron3Gvermi7644.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_64 1194033..1194802 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7644.t1.start1Gvermi7644.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1195136..1195138 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7644.t1 ID=Gvermi7644.t1|Name=Gvermi7644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=581bp
MLNMELCEMEEMMDIDLDIAPGHSSGNLSGIGVSLLLNNMNSVRGNAYNR
SLRGHHVGGNLLMASGGLCKVIATGGSNALIAMRGKHIMNGDPVQDSYEL
YGPLVSKFTVITFNGRDEDADLFGAEVFTFLGEKLTPLQVQCNSCSNTID
TKSITGDDIDVQDGDNFTLSRRRNVHYRAGYVKNIFDYTRLGTDQGGTMT
QTRVRAGPKDLVVASTNTLESIQIQSIQENGNTNLVVTNYIPDMIMFKAL
NGSVIPDDPSADLILVHDVSDFLAKRKSNPRFAYRSIYNSNSEQKLWLED
YDHDDFKLKISVMTSGFAITLMGDGLSLYTSWTETSPKFSQESTTPFSFD
AMGVAEILRLEFKKGIIFSDCQLEPECIPDLVMDCVRSPERHIRTGSPSF
QYVVHTSALPSPHMIGEGDALIYADRSGGEVYCGVGNNVIIVTDSNHTVN
TGRSTGLIEMTKADLAILIAIFIPRGIRFRDRSVGPDEITDHLESVTSIS
EVVRITPTDGESTISLHESIRNNYLYAKYLAALQSCSQGLEIRNIHASRK
FMGNHGEVQIPRMDTENGETNGPQQPVLIE*
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spliced messenger RNA

>Gvermi7644.t1 ID=Gvermi7644.t1|Name=Gvermi7644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1743bp|location=Sequence derived from alignment at ScGOVlb_64:1192021..1195138- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAAATATGGAGCTCTGTGAGATGGAAGAAATGATGGATATTGACCT
TGACATCGCTCCTGGTCACAGTTCTGGAAACCTATCCGGAATCGGTGTTA
GTCTACTGCTGAATAACATGAATAGCGTTCGAGGTAACGCGTACAATCGG
AGTCTAAGGGGGCACCATGTTGGTGGCAATCTTCTGATGGCGAGTGGTGG
ACTTTGTAAAGTAATTGCGACTGGTGGCAGCAACGCACTAATTGCGATGC
GAGGAAAACACATCATGAATGGTGATCCTGTACAAGATAGTTATGAGCTC
TATGGACCTCTTGTTTCGAAATTTACAGTGATCACGTTTAATGGGAGAGA
TGAGGATGCAGATCTTTTTGGAGCAGAGGTTTTCACGTTTCTTGGTGAGA
AGTTAACACCGTTACAAGTTCAGTGCAATTCATGCAGCAACACGATTGAC
ACCAAATCTATCACAGGGGATGATATTGATGTTCAAGATGGAGACAACTT
TACACTTTCCCGGCGTCGCAACGTACATTATAGAGCTGGATATGTAAAAA
ATATATTTGATTATACTCGGCTCGGTACTGACCAGGGGGGAACAATGACT
CAAACAAGGGTACGAGCTGGTCCTAAAGATTTAGTCGTTGCCTCTACAAA
CACCCTTGAGTCAATTCAAATCCAGAGTATTCAGGAAAACGGAAACACAA
ACCTGGTCGTCACAAATTATATTCCGGATATGATAATGTTCAAAGCTTTA
AATGGGAGTGTCATCCCTGATGACCCTTCAGCCGATCTTATTCTGGTCCA
CGATGTCAGTGATTTTCTGGCAAAAAGGAAATCGAATCCACGTTTTGCAT
ATCGGAGTATTTACAATAGCAACAGTGAACAAAAACTGTGGCTTGAGGAT
TATGATCATGATGATTTTAAGTTGAAAATATCCGTTATGACCAGCGGGTT
TGCTATCACTCTAATGGGAGACGGATTGTCTTTGTATACATCCTGGACTG
AAACCTCGCCAAAATTTTCTCAGGAAAGCACGACTCCGTTTTCTTTTGAT
GCAATGGGGGTTGCAGAAATACTGCGGCTGGAATTCAAGAAGGGGATAAT
CTTTTCAGACTGTCAACTGGAACCTGAATGTATCCCAGATCTTGTAATGG
ATTGCGTAAGGTCTCCTGAACGGCACATACGTACGGGATCACCTTCCTTC
CAATATGTTGTTCATACCTCGGCATTGCCAAGCCCTCACATGATTGGAGA
AGGAGATGCGCTGATTTACGCAGATCGTAGTGGAGGTGAAGTTTATTGTG
GGGTAGGCAACAATGTGATAATTGTCACGGACTCCAACCACACCGTCAAC
ACAGGACGTTCAACCGGGTTAATCGAGATGACGAAAGCCGATTTGGCGAT
ATTGATAGCGATCTTTATACCGAGGGGAATTCGATTCCGTGATCGTTCAG
TTGGACCAGATGAGATCACAGACCATCTGGAAAGTGTCACTTCAATATCT
GAAGTCGTTAGAATCACCCCTACTGACGGGGAATCGACCATTTCTCTGCA
CGAAAGCATTAGAAACAATTACCTGTATGCGAAATACCTAGCCGCTTTGC
AAAGTTGCAGCCAAGGGTTGGAGATAAGAAACATTCATGCAAGCAGAAAG
TTTATGGGAAATCACGGAGAAGTGCAAATTCCGAGAATGGATACAGAAAA
CGGGGAGACAAATGGTCCACAACAGCCTGTGCTTATCGAATGA
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protein sequence of Gvermi7644.t1

>Gvermi7644.t1 ID=Gvermi7644.t1|Name=Gvermi7644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=581bp
MLNMELCEMEEMMDIDLDIAPGHSSGNLSGIGVSLLLNNMNSVRGNAYNR
SLRGHHVGGNLLMASGGLCKVIATGGSNALIAMRGKHIMNGDPVQDSYEL
YGPLVSKFTVITFNGRDEDADLFGAEVFTFLGEKLTPLQVQCNSCSNTID
TKSITGDDIDVQDGDNFTLSRRRNVHYRAGYVKNIFDYTRLGTDQGGTMT
QTRVRAGPKDLVVASTNTLESIQIQSIQENGNTNLVVTNYIPDMIMFKAL
NGSVIPDDPSADLILVHDVSDFLAKRKSNPRFAYRSIYNSNSEQKLWLED
YDHDDFKLKISVMTSGFAITLMGDGLSLYTSWTETSPKFSQESTTPFSFD
AMGVAEILRLEFKKGIIFSDCQLEPECIPDLVMDCVRSPERHIRTGSPSF
QYVVHTSALPSPHMIGEGDALIYADRSGGEVYCGVGNNVIIVTDSNHTVN
TGRSTGLIEMTKADLAILIAIFIPRGIRFRDRSVGPDEITDHLESVTSIS
EVVRITPTDGESTISLHESIRNNYLYAKYLAALQSCSQGLEIRNIHASRK
FMGNHGEVQIPRMDTENGETNGPQQPVLIE*
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mRNA from alignment at ScGOVlb_64:1192021..1195138-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7644.t1 ID=Gvermi7644.t1|Name=Gvermi7644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3118bp|location=Sequence derived from alignment at ScGOVlb_64:1192021..1195138- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTAAATATGGAGCTCTGTGAGATGGAAGAAATGATGGATATTGACCT
TGACATCGCTCCTGGTCACAGTTCTGGAAACCTATCCGGAATCGGTGTTA
GTCTACTGCTGAATAACATGAATAGCGTTCGAGGTAACGCGTACAATCGG
AGTCTAAGGGGGCACCATGTTGGTGGCAATCTTCTGATGGCGAGTGGTGG
ACTTTGTAAAGTAATTGCGACTGGTGGCAGCAACGCACTAATTGCGATGC
GAGGAAAACACATCATGAATGGTGATCCTGTACAAGATAGTTATGAGCTC
TATGGACCTCTTGTTTCGAAATTTACAGTGATCACGGTGACGAACAGGGA
AGGAATAGTTGCTCCAGCATCAAAGAGAACTTGGTCGAGTTCGAGACTTA
CCATCTGTTGATCCGAGGAGAGTCGAAGAAGTTCAATCAGACACCTGACG
GTCTCTCTAGAGTTTACGTAGATGAAGCGAGCCCTTTACAGTGCTCGGAT
GTCGCTCAATGGAACTACAAGATTTCTAGTGCGCATACGCGCATGCGTAA
GTGTGCATGACTGTTTCATTCTATTACGTCATGGTTTCCCAAACGAGATA
ATGCAAGACTTGAGTTTGAATTGTGTTGAATCCTCTCAAGGTCTTGAATT
TCGCCGTACCCGGATGAATCTAGTTTAATCTACTGTGTACGTCATGGCAC
TGTCGATAGTCTCGACGATGACGATCAAAGCATAAGTCACACCCAAATCA
AAATTGTGGAAGCAACTGGTCAAGTTGTGAGTGAAAAAGGTCTTGTGCAC
ATAAAGTAAACAATGACAAGCGAAGAATTGTTTATGAACCGGGCACATCC
TTTAATTCACTGGAGCACACCTACGACTCTCAAGTAAATATTCTAGAGAC
GGGTGGAGGAAATAGACAGCAACTGAGGGGTTTCACGGATAACTCCCAAA
TACCTTTGAGTTCCTTCGAAAACGGTGACTTGCAATGCACCGACACGAGC
GCGTTTGGTTCTCATTCACAAACACTGGGGAAACTTGCATTGACTTAGAA
TTCGATATCTAGATTATGTTACGGTTAATTTTGCTGCCCGGTTCGACGCC
GTCCAGTTTAATGGGAGAGATGAGGATGCAGATCTTTTTGGAGCAGAGGT
TTTCACGTTTCTTGGTGAGAAGTTAACACCGTTACAAGTTCAGTGCAATT
CATGCAGCAACACGATTGACACCAAATCTATCACAGGGGATGATATTGAT
GTTCAAGATGGAGACAACTTTACACTTTCCCGGCGTCGCAACGTACATTA
TAGAGCTGGATATGTAAAAAATATATTTGATTATACTCGGCTCGGTACTG
ACCAGGGGGGAACAATGACTCAAACAAGGGTACGAGCTGGTCCTAAAGAT
TTAGTCGTTGCCTCTACAAACACCCTTGAGTCAATTCAAATCCAGAGTAT
TCAGGAAAACGGAAACACAAACGTGAGGAGGAAAACTTTGGTCATCCATG
GACTCAATCCGAACGAGATACTGAAGTAGTGAGGCAGACTGGTTCAGAGT
GTTCTTTTTTCCTCATCTGCGGGAAAGCTGGTCGTCACAAATTATATTCC
GGATATGATAATGTTCAAAGCTTTAAATGGGAGTGTCATCCCTGATGACC
CTTCAGCCGATCTTATTCTGGTCCACGATGTCAGTGATTTTCTGGCAAAA
AGGAAATCGAATCCACGTTTTGCATATCGGAGTATTTACAATAGCAACAG
TGAACAAAAACTGTGGCTTGAGGATTATGATCATGATGATTTTAAGTTGA
AAATATCCGTTATGACCAGCGGGTTTGCTATCACTCTAATGGGAGACGGA
TTGTCTTTGTATACATCCTGGACTGAAACCTCGCCAAAATTTTCTCAGGA
AAGCACGACTCCGTTTTCTTTTGATGCAATGGGGGTTGCAGAAATACTGC
GGCTGGAATTCAAGAAGGGGATAATCTTTTCAGACTGTCAACTGGAACCT
GAATGTATCCCAGATCTTGTAATGGATTGCGTAAGGTCTCCTGAACGGCA
CATACGTACGGGATCACCTTCCTTCCAATATGTTGTTCATACCTCGGCAT
TGCCAAGCCCTCACATGATTGGAGAAGGAGATGCGCTGATTTACGCAGAT
CGTAGTGGAGGTGAAGTTTATTGTGGGGTAGGCAACAATGTGATAATTGT
CACGGACTCCAACCACACCGTCAACACAGGACGTTCGTAAGGCAACGAAG
AGGAGAGGCACGACATCGTTCGCAATAAAGAATATACAAGCAATACTACC
GTCCAGCTTAGAGGAAAAGGGGATGGATACGAAATTGGACATAAGTATGA
TATGGTTGAAGGTTTATCAATTGACTCTGTATCTTTCGTGGATTTTCATA
ATGCGGTTTTCAGTGAATACCATGGGAGTTCCAGCGATTTTATCATGAAA
AAAGGAGCCAACACAGTGACCACATTTGATTTCAGTCCTTCCCACTTCCT
ACTTAAGGTCAATGATGAATACGAAATAATTGAGGACGCATTTTACTGTA
TGACACACAGAGCAAGAGGAAGTTGGAACAAGCGTTGGATTTTGAGCAGG
AAGTTGATGGCTCTTTTTCTGCTGCGGATATTAACTCCAACGACCTTTTC
TTTCGTATCCGCTCATCGAACCGTGGCTTATTCGTGACTTTGAAGACCTC
TCAGATCTATTTCATTGAATCAATATAAGTTGCCAGAACCGGGTTAATCG
AGATGACGAAAGCCGATTTGGCGATATTGATAGCGATCTTTATACCGAGG
GGAATTCGATTCCGTGATCGTTCAGTTGGACCAGATGAGATCACAGACCA
TCTGGAAAGTGTCACTTCAATATCTGAAGTCGTTAGAATCACCCCTACTG
ACGGGGAATCGACCATTTCTCTGCACGAAAGCATTAGAAACAATTACCTG
TATGCGAAATACCTAGCCGCTTTGCAAAGTTGCAGCCAAGGGTTGGAGAT
AAGAAACATTCATGCAAGCAGAAAGTTTATGGGAAATCACGGAGAAGTGC
AAATTCCGAGAATGGATACAGAAAACGGGGAGACAAATGGTCCACAACAG
CCTGTGCTTATCGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1192021..1195138-

>Gvermi7644.t1 ID=Gvermi7644.t1|Name=Gvermi7644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1743bp|location=Sequence derived from alignment at ScGOVlb_64:1192021..1195138- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTAAATATGGAGCTCTGTGAGATGGAAGAAATGATGGATATTGACCT
TGACATCGCTCCTGGTCACAGTTCTGGAAACCTATCCGGAATCGGTGTTA
GTCTACTGCTGAATAACATGAATAGCGTTCGAGGTAACGCGTACAATCGG
AGTCTAAGGGGGCACCATGTTGGTGGCAATCTTCTGATGGCGAGTGGTGG
ACTTTGTAAAGTAATTGCGACTGGTGGCAGCAACGCACTAATTGCGATGC
GAGGAAAACACATCATGAATGGTGATCCTGTACAAGATAGTTATGAGCTC
TATGGACCTCTTGTTTCGAAATTTACAGTGATCACGTTTAATGGGAGAGA
TGAGGATGCAGATCTTTTTGGAGCAGAGGTTTTCACGTTTCTTGGTGAGA
AGTTAACACCGTTACAAGTTCAGTGCAATTCATGCAGCAACACGATTGAC
ACCAAATCTATCACAGGGGATGATATTGATGTTCAAGATGGAGACAACTT
TACACTTTCCCGGCGTCGCAACGTACATTATAGAGCTGGATATGTAAAAA
ATATATTTGATTATACTCGGCTCGGTACTGACCAGGGGGGAACAATGACT
CAAACAAGGGTACGAGCTGGTCCTAAAGATTTAGTCGTTGCCTCTACAAA
CACCCTTGAGTCAATTCAAATCCAGAGTATTCAGGAAAACGGAAACACAA
ACCTGGTCGTCACAAATTATATTCCGGATATGATAATGTTCAAAGCTTTA
AATGGGAGTGTCATCCCTGATGACCCTTCAGCCGATCTTATTCTGGTCCA
CGATGTCAGTGATTTTCTGGCAAAAAGGAAATCGAATCCACGTTTTGCAT
ATCGGAGTATTTACAATAGCAACAGTGAACAAAAACTGTGGCTTGAGGAT
TATGATCATGATGATTTTAAGTTGAAAATATCCGTTATGACCAGCGGGTT
TGCTATCACTCTAATGGGAGACGGATTGTCTTTGTATACATCCTGGACTG
AAACCTCGCCAAAATTTTCTCAGGAAAGCACGACTCCGTTTTCTTTTGAT
GCAATGGGGGTTGCAGAAATACTGCGGCTGGAATTCAAGAAGGGGATAAT
CTTTTCAGACTGTCAACTGGAACCTGAATGTATCCCAGATCTTGTAATGG
ATTGCGTAAGGTCTCCTGAACGGCACATACGTACGGGATCACCTTCCTTC
CAATATGTTGTTCATACCTCGGCATTGCCAAGCCCTCACATGATTGGAGA
AGGAGATGCGCTGATTTACGCAGATCGTAGTGGAGGTGAAGTTTATTGTG
GGGTAGGCAACAATGTGATAATTGTCACGGACTCCAACCACACCGTCAAC
ACAGGACGTTCAACCGGGTTAATCGAGATGACGAAAGCCGATTTGGCGAT
ATTGATAGCGATCTTTATACCGAGGGGAATTCGATTCCGTGATCGTTCAG
TTGGACCAGATGAGATCACAGACCATCTGGAAAGTGTCACTTCAATATCT
GAAGTCGTTAGAATCACCCCTACTGACGGGGAATCGACCATTTCTCTGCA
CGAAAGCATTAGAAACAATTACCTGTATGCGAAATACCTAGCCGCTTTGC
AAAGTTGCAGCCAAGGGTTGGAGATAAGAAACATTCATGCAAGCAGAAAG
TTTATGGGAAATCACGGAGAAGTGCAAATTCCGAGAATGGATACAGAAAA
CGGGGAGACAAATGGTCCACAACAGCCTGTGCTTATCGAATGA
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