Gvermi7636.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7636.t1
Unique NameGvermi7636.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length524
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:1019218..1020789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7636Gvermi7636Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 1019218..1020789 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7636.t1.start1Gvermi7636.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 1019218..1019220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7636.t1.CDS1Gvermi7636.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 1019218..1020789 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7636.t1.exon1Gvermi7636.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 1019218..1020789 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7636.t1.stop1Gvermi7636.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 1020787..1020789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7636.t1Gvermi7636.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 1019218..1020789 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7636.t1 ID=Gvermi7636.t1|Name=Gvermi7636.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=524bp
MTPAVAVAVAVVLLAACAAPPRAQIVPPRADVSDEALENPKSRTPSPENT
NLFHLLPDARKSAPSLLSRLAPVHPEMRQLLALVADVDVIVTNYTRDPAG
APLTTCNYQSATSDWHDAATNFFDHRVLAGPTAVPDIACVTDAYDAALQN
ASRRASALRPPAYSSHRLFRLVRAYGRKLDRLAPALAAAAAAPGWTRFAD
ARRSGGLQHDDRSQRCVHDFVGFAKLRGAWYINTRVTNKDPLLTLGAGER
LFLNELDGGLPPAAAAAAAAAAAALSVYPVTLVPLGSPTRGGTRDDNSTF
EVWRSDAWVRSNTAFEIQTGAAFASQFGNIFSADNLAVRLALERGKHSAE
LAFDATTPSNIAILALPLAMNVVPVALIADVNTLGMLVYTLLTDVLTAIP
LAIKGIEVLLIGKRTKRAAVFRISGGNLFSPDDEQSYKAAELWVAECQPM
SNYITKGSSLLAVALLFMVGGLVAEVAAKHWVQRKRRLDIENFVNEQSIA
QSLLSPQAAALVMAQDNARGKRD*
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spliced messenger RNA

>Gvermi7636.t1 ID=Gvermi7636.t1|Name=Gvermi7636.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at ScGOVlb_64:1019218..1020789+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCAGCCGTCGCAGTCGCAGTCGCCGTCGTCCTGCTCGCCGCCTG
CGCCGCCCCGCCCCGCGCCCAGATCGTCCCGCCCCGCGCGGACGTCTCCG
ACGAGGCGCTGGAGAACCCCAAATCCCGCACTCCAAGCCCCGAAAACACC
AACCTGTTCCACCTGCTGCCCGACGCGCGCAAGTCGGCGCCCAGCCTGCT
CAGCCGCCTGGCGCCCGTGCACCCCGAGATGCGCCAGCTGCTCGCGCTCG
TCGCCGACGTGGACGTCATCGTCACCAACTACACGCGCGACCCCGCCGGC
GCCCCGCTCACCACCTGCAACTACCAGTCCGCCACCTCGGACTGGCACGA
CGCCGCCACCAACTTCTTCGACCACCGCGTGCTGGCCGGCCCCACCGCCG
TGCCGGACATCGCCTGCGTCACGGACGCGTACGACGCCGCGCTGCAGAAC
GCGTCGCGCCGCGCCTCCGCGCTGCGCCCGCCCGCCTACTCGTCGCACCG
CCTGTTCCGCCTCGTGCGCGCCTACGGCCGCAAGCTGGACCGCCTGGCGC
CCGCGCTCGCCGCCGCCGCCGCCGCGCCCGGCTGGACGCGCTTCGCCGAC
GCGCGCCGCTCGGGCGGCCTGCAGCACGACGACCGCTCGCAGCGCTGCGT
GCACGACTTTGTCGGCTTTGCCAAGCTGCGCGGCGCGTGGTACATCAACA
CGCGCGTCACCAACAAGGACCCGCTGCTCACGCTGGGCGCCGGCGAGCGC
CTCTTCCTCAACGAGCTGGACGGCGGGCTgccgcccgccgccgccgccgc
cgccgccgccgctgccgccgccCTGTCCGTCTACCCCGTCACGCTCGTGC
CGCTCGGCTCGCCGACAAGGGGCGGCACGCGCGACGACAACAGCACGTTC
GAGGTGTGGCGCTCGGACGCGTGGGTGCGGTCCAACACCGCCTTCGAGAT
TCAGACCGGCGCCGCGTTTGCGTCGCAGTTTGGCAACATCTTCTCGGCCG
ACAACCTCGCCGTGCGGCTGGCGCTGGAGCGCGGCAAGCACAGCGCCGAG
CTGGCGTTCGACGCCACCACGCCCAGCAACATCGCCATCCTGGCGCTGCC
GCTGGCCATGAACGTGGTGCCCGTCGCGCTCATTGCCGACGTCAACACGT
TGGGCATGCTCGTGTACACGCTGCTGACCGACGTGCTGACGGCCATCCCG
CTGGCCATCAAGGGCATCGAGGTGCTGCTGATCGGCAAGCGCACCAAGCG
CGCCGCCGTGTTCCGCATCAGCGGCGGCAACCTGTTCAGCCCCGACGACG
AGCAGTCGTACAAGGCCGCCGAGCTGTGGGTGGCCGAGTGCCAGCCCATG
AGCAACTACATCACCAAGGGGTCGTCGCTGCTGGCCGTGGCGCTGTTGTT
CATGGTGGGCGGGCTCGTCGCCGAGGTGGCGGCCAAACACTGGGTGCAGC
GCAAGCGGCGGCTCGACATTGAAAACTTTGTCAACGAGCAGAGCATTGCG
CAGTCGCTGCTGTCGCCGCAGGCCGCCGCGCTCGTCATGGCTCAGGACAA
CGCCAGGGGCAAGCGCGACTGA
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protein sequence of Gvermi7636.t1

>Gvermi7636.t1 ID=Gvermi7636.t1|Name=Gvermi7636.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=524bp
MTPAVAVAVAVVLLAACAAPPRAQIVPPRADVSDEALENPKSRTPSPENT
NLFHLLPDARKSAPSLLSRLAPVHPEMRQLLALVADVDVIVTNYTRDPAG
APLTTCNYQSATSDWHDAATNFFDHRVLAGPTAVPDIACVTDAYDAALQN
ASRRASALRPPAYSSHRLFRLVRAYGRKLDRLAPALAAAAAAPGWTRFAD
ARRSGGLQHDDRSQRCVHDFVGFAKLRGAWYINTRVTNKDPLLTLGAGER
LFLNELDGGLPPAAAAAAAAAAAALSVYPVTLVPLGSPTRGGTRDDNSTF
EVWRSDAWVRSNTAFEIQTGAAFASQFGNIFSADNLAVRLALERGKHSAE
LAFDATTPSNIAILALPLAMNVVPVALIADVNTLGMLVYTLLTDVLTAIP
LAIKGIEVLLIGKRTKRAAVFRISGGNLFSPDDEQSYKAAELWVAECQPM
SNYITKGSSLLAVALLFMVGGLVAEVAAKHWVQRKRRLDIENFVNEQSIA
QSLLSPQAAALVMAQDNARGKRD*
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mRNA from alignment at ScGOVlb_64:1019218..1020789+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7636.t1 ID=Gvermi7636.t1|Name=Gvermi7636.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at ScGOVlb_64:1019218..1020789+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCCAGCCGTCGCAGTCGCAGTCGCCGTCGTCCTGCTCGCCGCCTG
CGCCGCCCCGCCCCGCGCCCAGATCGTCCCGCCCCGCGCGGACGTCTCCG
ACGAGGCGCTGGAGAACCCCAAATCCCGCACTCCAAGCCCCGAAAACACC
AACCTGTTCCACCTGCTGCCCGACGCGCGCAAGTCGGCGCCCAGCCTGCT
CAGCCGCCTGGCGCCCGTGCACCCCGAGATGCGCCAGCTGCTCGCGCTCG
TCGCCGACGTGGACGTCATCGTCACCAACTACACGCGCGACCCCGCCGGC
GCCCCGCTCACCACCTGCAACTACCAGTCCGCCACCTCGGACTGGCACGA
CGCCGCCACCAACTTCTTCGACCACCGCGTGCTGGCCGGCCCCACCGCCG
TGCCGGACATCGCCTGCGTCACGGACGCGTACGACGCCGCGCTGCAGAAC
GCGTCGCGCCGCGCCTCCGCGCTGCGCCCGCCCGCCTACTCGTCGCACCG
CCTGTTCCGCCTCGTGCGCGCCTACGGCCGCAAGCTGGACCGCCTGGCGC
CCGCGCTCGCCGCCGCCGCCGCCGCGCCCGGCTGGACGCGCTTCGCCGAC
GCGCGCCGCTCGGGCGGCCTGCAGCACGACGACCGCTCGCAGCGCTGCGT
GCACGACTTTGTCGGCTTTGCCAAGCTGCGCGGCGCGTGGTACATCAACA
CGCGCGTCACCAACAAGGACCCGCTGCTCACGCTGGGCGCCGGCGAGCGC
CTCTTCCTCAACGAGCTGGACGGCGGGCTgccgcccgccgccgccgccgc
cgccgccgccgctgccgccgccCTGTCCGTCTACCCCGTCACGCTCGTGC
CGCTCGGCTCGCCGACAAGGGGCGGCACGCGCGACGACAACAGCACGTTC
GAGGTGTGGCGCTCGGACGCGTGGGTGCGGTCCAACACCGCCTTCGAGAT
TCAGACCGGCGCCGCGTTTGCGTCGCAGTTTGGCAACATCTTCTCGGCCG
ACAACCTCGCCGTGCGGCTGGCGCTGGAGCGCGGCAAGCACAGCGCCGAG
CTGGCGTTCGACGCCACCACGCCCAGCAACATCGCCATCCTGGCGCTGCC
GCTGGCCATGAACGTGGTGCCCGTCGCGCTCATTGCCGACGTCAACACGT
TGGGCATGCTCGTGTACACGCTGCTGACCGACGTGCTGACGGCCATCCCG
CTGGCCATCAAGGGCATCGAGGTGCTGCTGATCGGCAAGCGCACCAAGCG
CGCCGCCGTGTTCCGCATCAGCGGCGGCAACCTGTTCAGCCCCGACGACG
AGCAGTCGTACAAGGCCGCCGAGCTGTGGGTGGCCGAGTGCCAGCCCATG
AGCAACTACATCACCAAGGGGTCGTCGCTGCTGGCCGTGGCGCTGTTGTT
CATGGTGGGCGGGCTCGTCGCCGAGGTGGCGGCCAAACACTGGGTGCAGC
GCAAGCGGCGGCTCGACATTGAAAACTTTGTCAACGAGCAGAGCATTGCG
CAGTCGCTGCTGTCGCCGCAGGCCGCCGCGCTCGTCATGGCTCAGGACAA
CGCCAGGGGCAAGCGCGACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:1019218..1020789+

>Gvermi7636.t1 ID=Gvermi7636.t1|Name=Gvermi7636.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1572bp|location=Sequence derived from alignment at ScGOVlb_64:1019218..1020789+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCCAGCCGTCGCAGTCGCAGTCGCCGTCGTCCTGCTCGCCGCCTG
CGCCGCCCCGCCCCGCGCCCAGATCGTCCCGCCCCGCGCGGACGTCTCCG
ACGAGGCGCTGGAGAACCCCAAATCCCGCACTCCAAGCCCCGAAAACACC
AACCTGTTCCACCTGCTGCCCGACGCGCGCAAGTCGGCGCCCAGCCTGCT
CAGCCGCCTGGCGCCCGTGCACCCCGAGATGCGCCAGCTGCTCGCGCTCG
TCGCCGACGTGGACGTCATCGTCACCAACTACACGCGCGACCCCGCCGGC
GCCCCGCTCACCACCTGCAACTACCAGTCCGCCACCTCGGACTGGCACGA
CGCCGCCACCAACTTCTTCGACCACCGCGTGCTGGCCGGCCCCACCGCCG
TGCCGGACATCGCCTGCGTCACGGACGCGTACGACGCCGCGCTGCAGAAC
GCGTCGCGCCGCGCCTCCGCGCTGCGCCCGCCCGCCTACTCGTCGCACCG
CCTGTTCCGCCTCGTGCGCGCCTACGGCCGCAAGCTGGACCGCCTGGCGC
CCGCGCTCGCCGCCGCCGCCGCCGCGCCCGGCTGGACGCGCTTCGCCGAC
GCGCGCCGCTCGGGCGGCCTGCAGCACGACGACCGCTCGCAGCGCTGCGT
GCACGACTTTGTCGGCTTTGCCAAGCTGCGCGGCGCGTGGTACATCAACA
CGCGCGTCACCAACAAGGACCCGCTGCTCACGCTGGGCGCCGGCGAGCGC
CTCTTCCTCAACGAGCTGGACGGCGGGCTgccgcccgccgccgccgccgc
cgccgccgccgctgccgccgccCTGTCCGTCTACCCCGTCACGCTCGTGC
CGCTCGGCTCGCCGACAAGGGGCGGCACGCGCGACGACAACAGCACGTTC
GAGGTGTGGCGCTCGGACGCGTGGGTGCGGTCCAACACCGCCTTCGAGAT
TCAGACCGGCGCCGCGTTTGCGTCGCAGTTTGGCAACATCTTCTCGGCCG
ACAACCTCGCCGTGCGGCTGGCGCTGGAGCGCGGCAAGCACAGCGCCGAG
CTGGCGTTCGACGCCACCACGCCCAGCAACATCGCCATCCTGGCGCTGCC
GCTGGCCATGAACGTGGTGCCCGTCGCGCTCATTGCCGACGTCAACACGT
TGGGCATGCTCGTGTACACGCTGCTGACCGACGTGCTGACGGCCATCCCG
CTGGCCATCAAGGGCATCGAGGTGCTGCTGATCGGCAAGCGCACCAAGCG
CGCCGCCGTGTTCCGCATCAGCGGCGGCAACCTGTTCAGCCCCGACGACG
AGCAGTCGTACAAGGCCGCCGAGCTGTGGGTGGCCGAGTGCCAGCCCATG
AGCAACTACATCACCAAGGGGTCGTCGCTGCTGGCCGTGGCGCTGTTGTT
CATGGTGGGCGGGCTCGTCGCCGAGGTGGCGGCCAAACACTGGGTGCAGC
GCAAGCGGCGGCTCGACATTGAAAACTTTGTCAACGAGCAGAGCATTGCG
CAGTCGCTGCTGTCGCCGCAGGCCGCCGCGCTCGTCATGGCTCAGGACAA
CGCCAGGGGCAAGCGCGACTGA
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