Gvermi7635.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7635.t1
Unique NameGvermi7635.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length555
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:997204..998868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1453501.JELR01000002_gene98
Max annot lvl1236|Gammaproteobacteria
Evalue2.21e-74
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1QX4P@1224|Proteobacteria,1T5MB@1236|Gammaproteobacteria
Descriptioncalcium- and calmodulin-responsive adenylate cyclase activity
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7635Gvermi7635Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 997204..998868 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7635.t1.stop1Gvermi7635.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 997204..997206 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7635.t1.CDS1Gvermi7635.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 997204..998868 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7635.t1.exon1Gvermi7635.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 997204..998868 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7635.t1.start1Gvermi7635.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 998866..998868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7635.t1Gvermi7635.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 997204..998868 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7635.t1 ID=Gvermi7635.t1|Name=Gvermi7635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=555bp
MGTIVTEASSPSGRVSLQKQLSIVDMKIALGVLSLLISATLLCAVEAQRT
QNTIERESQAYVFDLFPNVFNDVTTEGVETPIQIRAFFYLNLAVFNAWAS
YHPTAVDIFGRSRFRRPPSEHTVQNKNIAIYYSLFRLYQNNPASFGGASG
IPVFRERMMLQGLNPDDTSLNMSTPIGIGNRAGLDTGRLMLIDGWNSDGS
LTSSNPFYAQPFSDYTSYTPVNTPWKIRFPFRWQPLLETDGSGFFFRQEH
VTPFAGRAIAFSETPAQAGGRKVRSPYRNSRAALAGANAKDVADLRRYAR
AVLRRSARLTERQRLLAELLDNKVLGFRTAERPLGTESVAAAVRLFIFGA
GLDLSYDDELIYGLASNIVTYDATTAVWREKVRQDAIRPTGQTMQLLFGD
APVRVWGGPGRQTATIRAGEWRPYLRTMPHSEFPSASACVCTAFIEHALV
FSGGRDYFPYNLTFPKGSSRLYRGQVPRRDVTISIDRLSEWARICGESRL
WGGVHFEPAIAGGVQLCKGLGVKAQHVVDRLVRGQPDLTWLRWLPRDVER
FWER*
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spliced messenger RNA

>Gvermi7635.t1 ID=Gvermi7635.t1|Name=Gvermi7635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1665bp|location=Sequence derived from alignment at ScGOVlb_64:997204..998868- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTACCATCGTGACGGAGGCTAGCTCACCGTCGGGTCGCGTATCCCT
CCAAAAGCAACTTTCCATCGTGGATATGAAAATAGCCCTGGGTGTTTTGT
CTTTGCTCATCAGCGCGACTCTGCTGTGCGCTGTTGAAGCCCAACGTACG
CAGAACACGATAGAGCGTGAAAGCCAAGCTTACGTGTTCGACCTCTTTCC
CAATGTGTTCAATGACGTCACAACCGAAGGCGTGGAAACTCCGATTCAAA
TCCGTGCCTTCTTCTACCTCAACCTCGCCGTTTTCAACGCCTGGGCCAGC
TATCACCCGACCGCCGTCGATATCTTTGGTCGATCACGTTTCAGGCGCCC
GCCTTCGGAGCACACAGTGCAGAACAAAAACATCGCCATCTACTACTCCC
TGTTCCGGCTGTACCAAAATAACCCGGCGAGCTTTGGCGGAGCGTCTGGA
ATTCCGGTCTTTCGAGAACGCATGATGTTACAGGGCCTCAACCCGGACGA
CACCAGCCTCAATATGTCCACCCCCATCGGCATCGGCAACCGCGCCGGTT
TGGACACGGGAAGGCTCATGTTGATTGATGGTTGGAACTCTGACGGCTCG
CTGACTTCGAGCAACCCTTTCTATGCTCAGCCCTTTTCGGACTATACGTC
GTACACTCCAGTGAACACACCTTGGAAGATTCGCTTCCCATTCCGCTGGC
AGCCGCTGCTCGAAACCGACGGAAGTGGCTTCTTCTTCCGCCAAGAGCAC
GTCACGCCGTTCGCGGGCCGCGCCATAGCGTTCAGCGAAACGCCGGCACA
GGCCGGTGGGCGAAAGGTGCGGTCGCCGTACCGCAATTCGCGCGCAGCGT
TGGCAGGAGCCAACGCCAAAGACGTGGCCGACCTGCGGCGCTACGCGCGC
GCGGTTCTGCGCCGCTCGGCGCGGCTGACAGAGAGGCAGCGGCTGCTGGC
GGAGCTGCTGGACAACAAGGTGCTCGGGTTCCGGACGGCGGAGCGGCCGC
TCGGCACGGAGAGCGTGGCGGCGGCCGTGCGGCTGTTCATCTTTGGCGCC
GGGCTGGACCTTTCGTACGACGACGAGCTGATTTACGGGCTGGCGTCGAA
CATCGTGACGTACGACGCGACCACGGCGGTGTGGCGCGAGAAGGTGCGGC
AGGACGCCATCCGGCCGACGGGGCAGACGATGCAGCTGCTGTTCGGCGAC
GCGCCGGTGCGCGTGTGGGGCGGGCCGGGGCGGCAGACGGCGACGATTCG
CGCGGGGGAGTGGCGGCCGTATCTGCGCACGATGCCGCACAGCGAGTTCC
CGTCGGCGTCGGCGTGCGTGTGCACGGCGTTCATCGAGCACGCGCTGGTG
TTCAGCGGGGGGCGCGACTACTTCCCGTACAACCTGACGTTTCCGAAGGG
GTCGAGCCGGTTGTACCGCGGGCAGGTGCCGCGCCGCGACGTGACGATCA
GCATCGACCGGCTGTCGGAGTGGGCGAGGATCTGCGGGGAGTCGCGGCTG
TGGGGCGGGGTGCACTTCGAGCCGGCGATTGCGGGCGGCGTGCAGCTGTG
CAAGGGGCTGGGCGTCAAGGCGCAGCACGTGGTGGACAGGCTGGTGCGCG
GGCAGCCGGACCTGACGTGGTTGCGCTGGCTGCCCCGCGACGTCGAGCGC
TTCTGGGAACGCTGA
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protein sequence of Gvermi7635.t1

>Gvermi7635.t1 ID=Gvermi7635.t1|Name=Gvermi7635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=555bp
MGTIVTEASSPSGRVSLQKQLSIVDMKIALGVLSLLISATLLCAVEAQRT
QNTIERESQAYVFDLFPNVFNDVTTEGVETPIQIRAFFYLNLAVFNAWAS
YHPTAVDIFGRSRFRRPPSEHTVQNKNIAIYYSLFRLYQNNPASFGGASG
IPVFRERMMLQGLNPDDTSLNMSTPIGIGNRAGLDTGRLMLIDGWNSDGS
LTSSNPFYAQPFSDYTSYTPVNTPWKIRFPFRWQPLLETDGSGFFFRQEH
VTPFAGRAIAFSETPAQAGGRKVRSPYRNSRAALAGANAKDVADLRRYAR
AVLRRSARLTERQRLLAELLDNKVLGFRTAERPLGTESVAAAVRLFIFGA
GLDLSYDDELIYGLASNIVTYDATTAVWREKVRQDAIRPTGQTMQLLFGD
APVRVWGGPGRQTATIRAGEWRPYLRTMPHSEFPSASACVCTAFIEHALV
FSGGRDYFPYNLTFPKGSSRLYRGQVPRRDVTISIDRLSEWARICGESRL
WGGVHFEPAIAGGVQLCKGLGVKAQHVVDRLVRGQPDLTWLRWLPRDVER
FWER*
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mRNA from alignment at ScGOVlb_64:997204..998868-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7635.t1 ID=Gvermi7635.t1|Name=Gvermi7635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1665bp|location=Sequence derived from alignment at ScGOVlb_64:997204..998868- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTACCATCGTGACGGAGGCTAGCTCACCGTCGGGTCGCGTATCCCT
CCAAAAGCAACTTTCCATCGTGGATATGAAAATAGCCCTGGGTGTTTTGT
CTTTGCTCATCAGCGCGACTCTGCTGTGCGCTGTTGAAGCCCAACGTACG
CAGAACACGATAGAGCGTGAAAGCCAAGCTTACGTGTTCGACCTCTTTCC
CAATGTGTTCAATGACGTCACAACCGAAGGCGTGGAAACTCCGATTCAAA
TCCGTGCCTTCTTCTACCTCAACCTCGCCGTTTTCAACGCCTGGGCCAGC
TATCACCCGACCGCCGTCGATATCTTTGGTCGATCACGTTTCAGGCGCCC
GCCTTCGGAGCACACAGTGCAGAACAAAAACATCGCCATCTACTACTCCC
TGTTCCGGCTGTACCAAAATAACCCGGCGAGCTTTGGCGGAGCGTCTGGA
ATTCCGGTCTTTCGAGAACGCATGATGTTACAGGGCCTCAACCCGGACGA
CACCAGCCTCAATATGTCCACCCCCATCGGCATCGGCAACCGCGCCGGTT
TGGACACGGGAAGGCTCATGTTGATTGATGGTTGGAACTCTGACGGCTCG
CTGACTTCGAGCAACCCTTTCTATGCTCAGCCCTTTTCGGACTATACGTC
GTACACTCCAGTGAACACACCTTGGAAGATTCGCTTCCCATTCCGCTGGC
AGCCGCTGCTCGAAACCGACGGAAGTGGCTTCTTCTTCCGCCAAGAGCAC
GTCACGCCGTTCGCGGGCCGCGCCATAGCGTTCAGCGAAACGCCGGCACA
GGCCGGTGGGCGAAAGGTGCGGTCGCCGTACCGCAATTCGCGCGCAGCGT
TGGCAGGAGCCAACGCCAAAGACGTGGCCGACCTGCGGCGCTACGCGCGC
GCGGTTCTGCGCCGCTCGGCGCGGCTGACAGAGAGGCAGCGGCTGCTGGC
GGAGCTGCTGGACAACAAGGTGCTCGGGTTCCGGACGGCGGAGCGGCCGC
TCGGCACGGAGAGCGTGGCGGCGGCCGTGCGGCTGTTCATCTTTGGCGCC
GGGCTGGACCTTTCGTACGACGACGAGCTGATTTACGGGCTGGCGTCGAA
CATCGTGACGTACGACGCGACCACGGCGGTGTGGCGCGAGAAGGTGCGGC
AGGACGCCATCCGGCCGACGGGGCAGACGATGCAGCTGCTGTTCGGCGAC
GCGCCGGTGCGCGTGTGGGGCGGGCCGGGGCGGCAGACGGCGACGATTCG
CGCGGGGGAGTGGCGGCCGTATCTGCGCACGATGCCGCACAGCGAGTTCC
CGTCGGCGTCGGCGTGCGTGTGCACGGCGTTCATCGAGCACGCGCTGGTG
TTCAGCGGGGGGCGCGACTACTTCCCGTACAACCTGACGTTTCCGAAGGG
GTCGAGCCGGTTGTACCGCGGGCAGGTGCCGCGCCGCGACGTGACGATCA
GCATCGACCGGCTGTCGGAGTGGGCGAGGATCTGCGGGGAGTCGCGGCTG
TGGGGCGGGGTGCACTTCGAGCCGGCGATTGCGGGCGGCGTGCAGCTGTG
CAAGGGGCTGGGCGTCAAGGCGCAGCACGTGGTGGACAGGCTGGTGCGCG
GGCAGCCGGACCTGACGTGGTTGCGCTGGCTGCCCCGCGACGTCGAGCGC
TTCTGGGAACGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_64:997204..998868-

>Gvermi7635.t1 ID=Gvermi7635.t1|Name=Gvermi7635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1665bp|location=Sequence derived from alignment at ScGOVlb_64:997204..998868- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTACCATCGTGACGGAGGCTAGCTCACCGTCGGGTCGCGTATCCCT
CCAAAAGCAACTTTCCATCGTGGATATGAAAATAGCCCTGGGTGTTTTGT
CTTTGCTCATCAGCGCGACTCTGCTGTGCGCTGTTGAAGCCCAACGTACG
CAGAACACGATAGAGCGTGAAAGCCAAGCTTACGTGTTCGACCTCTTTCC
CAATGTGTTCAATGACGTCACAACCGAAGGCGTGGAAACTCCGATTCAAA
TCCGTGCCTTCTTCTACCTCAACCTCGCCGTTTTCAACGCCTGGGCCAGC
TATCACCCGACCGCCGTCGATATCTTTGGTCGATCACGTTTCAGGCGCCC
GCCTTCGGAGCACACAGTGCAGAACAAAAACATCGCCATCTACTACTCCC
TGTTCCGGCTGTACCAAAATAACCCGGCGAGCTTTGGCGGAGCGTCTGGA
ATTCCGGTCTTTCGAGAACGCATGATGTTACAGGGCCTCAACCCGGACGA
CACCAGCCTCAATATGTCCACCCCCATCGGCATCGGCAACCGCGCCGGTT
TGGACACGGGAAGGCTCATGTTGATTGATGGTTGGAACTCTGACGGCTCG
CTGACTTCGAGCAACCCTTTCTATGCTCAGCCCTTTTCGGACTATACGTC
GTACACTCCAGTGAACACACCTTGGAAGATTCGCTTCCCATTCCGCTGGC
AGCCGCTGCTCGAAACCGACGGAAGTGGCTTCTTCTTCCGCCAAGAGCAC
GTCACGCCGTTCGCGGGCCGCGCCATAGCGTTCAGCGAAACGCCGGCACA
GGCCGGTGGGCGAAAGGTGCGGTCGCCGTACCGCAATTCGCGCGCAGCGT
TGGCAGGAGCCAACGCCAAAGACGTGGCCGACCTGCGGCGCTACGCGCGC
GCGGTTCTGCGCCGCTCGGCGCGGCTGACAGAGAGGCAGCGGCTGCTGGC
GGAGCTGCTGGACAACAAGGTGCTCGGGTTCCGGACGGCGGAGCGGCCGC
TCGGCACGGAGAGCGTGGCGGCGGCCGTGCGGCTGTTCATCTTTGGCGCC
GGGCTGGACCTTTCGTACGACGACGAGCTGATTTACGGGCTGGCGTCGAA
CATCGTGACGTACGACGCGACCACGGCGGTGTGGCGCGAGAAGGTGCGGC
AGGACGCCATCCGGCCGACGGGGCAGACGATGCAGCTGCTGTTCGGCGAC
GCGCCGGTGCGCGTGTGGGGCGGGCCGGGGCGGCAGACGGCGACGATTCG
CGCGGGGGAGTGGCGGCCGTATCTGCGCACGATGCCGCACAGCGAGTTCC
CGTCGGCGTCGGCGTGCGTGTGCACGGCGTTCATCGAGCACGCGCTGGTG
TTCAGCGGGGGGCGCGACTACTTCCCGTACAACCTGACGTTTCCGAAGGG
GTCGAGCCGGTTGTACCGCGGGCAGGTGCCGCGCCGCGACGTGACGATCA
GCATCGACCGGCTGTCGGAGTGGGCGAGGATCTGCGGGGAGTCGCGGCTG
TGGGGCGGGGTGCACTTCGAGCCGGCGATTGCGGGCGGCGTGCAGCTGTG
CAAGGGGCTGGGCGTCAAGGCGCAGCACGTGGTGGACAGGCTGGTGCGCG
GGCAGCCGGACCTGACGTGGTTGCGCTGGCTGCCCCGCGACGTCGAGCGC
TTCTGGGAACGCTGA
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