Gvermi7630.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7630.t1
Unique NameGvermi7630.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:937824..938423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr48253
PFAMsBACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl2759|Eukaryota
KEGG koko:K10442,ko:K20285,ko:K21912
Evalue1.77e-22
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryKLT
BRITEko00000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7630Gvermi7630Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 937824..938423 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7630.t1.stop1Gvermi7630.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 937824..937826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7630.t1.CDS1Gvermi7630.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 937824..938423 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7630.t1.exon1Gvermi7630.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 937824..938423 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7630.t1.start1Gvermi7630.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 938421..938423 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7630.t1Gvermi7630.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 937824..938423 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7630.t1 ID=Gvermi7630.t1|Name=Gvermi7630.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=200bp
LCSACKLKPFLSNGNFADCQSIYDLTDVACQQQLRQYALANSGCDKVRLQ
QTSDFSSSYNRMQLDYFVYSMCEQCCDCVPRGASPDQYEDRNATGTLLTA
YRGNCPAHAHYDICRVLPDIRYTMALGVDETPHEDWPRVCPLLKSWIASD
AAKGWLWQSYVSMRGEIARFLDKLLSDMRCGAQDAWLECAALESAQGRL*
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spliced messenger RNA

>Gvermi7630.t1 ID=Gvermi7630.t1|Name=Gvermi7630.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=600bp|location=Sequence derived from alignment at ScGOVlb_64:937824..938423- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTGCTCGGCGTGCAAGCTAAAGCCGTTCCTGAGCAATGGAAACTTTGC
GGACTGCCAGTCGATCTACGACTTGACGGACGTGGCGTGCCAGCAGCAGC
TGCGGCAGTACGCGCTGGCCAACAGCGGGTGCGACAAGGTGCGGCTGCAG
CAGACGAGCGACTTTTCCAGCTCGTACAACCGCATGCAGCTGGACTACTT
TGTGTACTCTATGTGTGAGCAGTGCTGTGACTGTGTGCCGCGCGGGGCGT
CGCCCGACCAGTACGAGGACCGCAATGCGACCGGGACGCTGCTGACGGCG
TATCGCGGCAACTGCCCGGCGCACGCGCACTACGACATCTGCCGCGTGCT
GCCGGACATCCGGTACACGATGGCGCTGGGCGTGGACGAGACGCCGCACG
AGGACTGGCCGCGCGTGTGTCCGCTGCTCAAGAGCTGGATCGCGTCGGAC
GCGGCCAAAGGGTGGCTGTGGCAGTCGTACGTGAGCATGCGCGGGGAGAT
TGCGCGCTTCCTGGACAAGCTGCTAAGCGACATGCGTTGCGGGGCGCAGG
ACGCGTGGCTGGAGTGCGCGGCGCTGGAGTCGGCGCAGGGCCGCCTGTAG
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protein sequence of Gvermi7630.t1

>Gvermi7630.t1 ID=Gvermi7630.t1|Name=Gvermi7630.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=200bp
LCSACKLKPFLSNGNFADCQSIYDLTDVACQQQLRQYALANSGCDKVRLQ
QTSDFSSSYNRMQLDYFVYSMCEQCCDCVPRGASPDQYEDRNATGTLLTA
YRGNCPAHAHYDICRVLPDIRYTMALGVDETPHEDWPRVCPLLKSWIASD
AAKGWLWQSYVSMRGEIARFLDKLLSDMRCGAQDAWLECAALESAQGRL*
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mRNA from alignment at ScGOVlb_64:937824..938423-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7630.t1 ID=Gvermi7630.t1|Name=Gvermi7630.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=600bp|location=Sequence derived from alignment at ScGOVlb_64:937824..938423- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTGCTCGGCGTGCAAGCTAAAGCCGTTCCTGAGCAATGGAAACTTTGC
GGACTGCCAGTCGATCTACGACTTGACGGACGTGGCGTGCCAGCAGCAGC
TGCGGCAGTACGCGCTGGCCAACAGCGGGTGCGACAAGGTGCGGCTGCAG
CAGACGAGCGACTTTTCCAGCTCGTACAACCGCATGCAGCTGGACTACTT
TGTGTACTCTATGTGTGAGCAGTGCTGTGACTGTGTGCCGCGCGGGGCGT
CGCCCGACCAGTACGAGGACCGCAATGCGACCGGGACGCTGCTGACGGCG
TATCGCGGCAACTGCCCGGCGCACGCGCACTACGACATCTGCCGCGTGCT
GCCGGACATCCGGTACACGATGGCGCTGGGCGTGGACGAGACGCCGCACG
AGGACTGGCCGCGCGTGTGTCCGCTGCTCAAGAGCTGGATCGCGTCGGAC
GCGGCCAAAGGGTGGCTGTGGCAGTCGTACGTGAGCATGCGCGGGGAGAT
TGCGCGCTTCCTGGACAAGCTGCTAAGCGACATGCGTTGCGGGGCGCAGG
ACGCGTGGCTGGAGTGCGCGGCGCTGGAGTCGGCGCAGGGCCGCCTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:937824..938423-

>Gvermi7630.t1 ID=Gvermi7630.t1|Name=Gvermi7630.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=600bp|location=Sequence derived from alignment at ScGOVlb_64:937824..938423- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTGCTCGGCGTGCAAGCTAAAGCCGTTCCTGAGCAATGGAAACTTTGC
GGACTGCCAGTCGATCTACGACTTGACGGACGTGGCGTGCCAGCAGCAGC
TGCGGCAGTACGCGCTGGCCAACAGCGGGTGCGACAAGGTGCGGCTGCAG
CAGACGAGCGACTTTTCCAGCTCGTACAACCGCATGCAGCTGGACTACTT
TGTGTACTCTATGTGTGAGCAGTGCTGTGACTGTGTGCCGCGCGGGGCGT
CGCCCGACCAGTACGAGGACCGCAATGCGACCGGGACGCTGCTGACGGCG
TATCGCGGCAACTGCCCGGCGCACGCGCACTACGACATCTGCCGCGTGCT
GCCGGACATCCGGTACACGATGGCGCTGGGCGTGGACGAGACGCCGCACG
AGGACTGGCCGCGCGTGTGTCCGCTGCTCAAGAGCTGGATCGCGTCGGAC
GCGGCCAAAGGGTGGCTGTGGCAGTCGTACGTGAGCATGCGCGGGGAGAT
TGCGCGCTTCCTGGACAAGCTGCTAAGCGACATGCGTTGCGGGGCGCAGG
ACGCGTGGCTGGAGTGCGCGGCGCTGGAGTCGGCGCAGGGCCGCCTGTAG
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