Gvermi7626.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7626.t1
Unique Name	Gvermi7626.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	627

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_64	contig	ScGOVlb_64:845559..847439 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7626	Gvermi7626	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_64 845559..847439 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7626.t1.start1	Gvermi7626.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_64 845559..845561 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7626.t1.CDS1	Gvermi7626.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_64 845559..847439 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7626.t1.exon1	Gvermi7626.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_64 845559..847439 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7626.t1.stop1	Gvermi7626.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_64 847437..847439 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7626.t1	Gvermi7626.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_64 845559..847439 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_64:845559..847439+
coding sequence from alignment at ScGOVlb_64:845559..847439+

mRNA sequence

>Gvermi7626.t1 ID=Gvermi7626.t1|Name=Gvermi7626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=627bp
MHAAQVLERYRCLFCSLAPSTFILPESDISAAQQAARTQETWRTHFLSRA
GTNLRRALSYALLDSISARNADDALCEPDLGIMDGDDGGYTTPASLLEDE
RIADASVPCYALLGAPASQRSSSANLSAFESTSTVLLAEEAFDLLYQFHH
SSSTPEKDLLAKLLSEMQTIVTKTRTREIRHPQQLANSFERITERQNLPA
TVCQQLESLVSTAKKCAQACRDRALVGSKADALTTGLLSANQSKSLLDSR
TVVRPPRKCPRAPTFVNAVSHPHPPASLEQILGPTNIVPKNVYCLRHYHS
WRSAVVAKVMEKRQNSISKHQNVVSQVSAHVRSPRLRVTRARKDMIEIFN
DTEHTSALEAQDHYDAMTRSVCALLFAHAGFTHIKTNAMNLVADVVQQFI
MQMGSSLCVVRDNFDKVLDADVYPDGRLKTTEERIEEYRIICESGPKGSV
QDLVYYMKYELPRVMDSMIEAEKQLEHQVLCNNFGADIFRDPEELMLMEA
NVRAELANDPTSSHDKLCVNGQGVPVYEEDVKLEGEPFVLGYLCESVRLD
VLGGITVPTCAVYGRKTLSKDGVASGRIEKAQRSAVSKNNGASLNSTSTS
SALKASSKPMKSEANAIDTDDEPLCK*

spliced messenger RNA

>Gvermi7626.t1 ID=Gvermi7626.t1|Name=Gvermi7626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1881bp|location=Sequence derived from alignment at ScGOVlb_64:845559..847439+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGCCGCCCAGGTCTTAGAGCGATACCGCTGCTTGTTTTGCTCTCT
AGCACCTTCTACCTTCATTCTTCCCGAATCCGATATTTCAGCTGCGCAGC
AAGCGGCACGCACGCAAGAGACGTGGCGAACGCATTTCCTTTCTCGTGCA
GGCACCAACTTGCGCCGCGCATTGTCCTATGCTCTCCTGGACTCCATATC
CGCTCGTAATGCAGACGATGCACTATGCGAGCCTGACCTGGGCATCATGG
ACGGCGATGACGGCGGTTACACTACACCAGCTTCCCTGCTTGAGGACGAG
AGAATCGCTGATGCTTCAGTGCCCTGTTATGCTCTTTTGGGAGCGCCGGC
TTCTCAACGCTCTTCTTCAGCAAATTTATCGGCGTTCGAATCAACTTCTA
CCGTGCTTCTCGCTGAAGAGGCATTCGATCTTCTGTACCAATTCCATCAT
TCGTCGTCGACTCCCGAGAAAGACCTGCTTGCAAAGTTGCTTTCTGAAAT
GCAAACTATTGTTACCAAAACGCGAACGAGGGAAATTCGCCACCCGCAGC
AACTTGCAAACTCTTTTGAGCGTATAACTGAGAGACAGAACTTGCCTGCG
ACAGTATGCCAGCAACTCGAAAGTTTAGTCTCCACGGCCAAAAAGTGCGC
ACAAGCCTGTCGTGATCGAGCTCTGGTTGGCTCCAAAGCTGACGCTTTAA
CGACTGGGCTTCTTTCCGCAAACCAATCCAAGTCGTTGCTTGATTCCAGA
ACAGTGGTGCGTCCACCCCGCAAGTGTCCTCGCGCTCCAACGTTCGTGAA
TGCTGTCTCTCATCCTCATCCACCAGCTTCATTGGAACAAATCTTGGGGC
CGACAAATATCGTCCCGAAAAATGTGTATTGCCTGCGTCACTATCATTCG
TGGCGTTCGGCGGTAGTTGCCAAGGTTATGGAGAAGCGTCAAAATTCAAT
TTCAAAGCATCAAAATGTTGTATCACAAGTCAGTGCCCACGTTAGGAGTC
CGCGACTGCGGGTCACAAGGGCACGGAAAGATATGATTGAAATATTCAAT
GATACGGAGCATACGTCTGCCTTGGAAGCTCAAGATCACTACGATGCTAT
GACGCGTTCTGTCTGTGCACTACTGTTTGCACATGCCGGTTTTACACATA
TCAAAACAAACGCAATGAACCTCGTGGCGGATGTGGTTCAGCAGTTCATA
ATGCAAATGGGATCTAGTTTGTGCGTGGTCCGAGACAATTTTGACAAAGT
TTTAGATGCAGATGTTTACCCAGATGGAAGACTGAAGACTACCGAGGAGA
GAATTGAAGAGTACAGAATCATATGCGAATCAGGCCCAAAGGGTAGTGTT
CAAGATTTGGTGTATTATATGAAATATGAGCTGCCCCGCGTTATGGACAG
TATGATAGAGGCTGAAAAACAACTCGAACATCAAGTTCTCTGCAATAACT
TTGGTGCAGATATCTTTCGAGACCCGGAGGAATTAATGCTTATGGAGGCT
AATGTACGCGCAGAGCTTGCTAATGACCCCACATCTTCTCACGACAAACT
CTGTGTAAATGGGCAGGGCGTACCAGTGTATGAAGAAGATGTGAAGCTCG
AAGGCGAGCCATTTGTACTCGGGTACCTTTGTGAATCTGTGCGTTTAGAT
GTTCTTGGGGGCATAACCGTTCCCACATGCGCTGTGTACGGGAGAAAGAC
CTTGAGCAAGGACGGCGTTGCGAGCGGGCGAATTGAGAAAGCTCAACGGT
CTGCTGTGTCGAAGAACAATGGCGCTTCATTGAACAGTACATCGACCTCT
TCAGCTCTAAAAGCCTCTTCTAAGCCGATGAAGTCAGAAGCAAACGCTAT
AGATACAGATGACGAACCACTGTGCAAATGA

protein sequence of Gvermi7626.t1

>Gvermi7626.t1 ID=Gvermi7626.t1|Name=Gvermi7626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=627bp
MHAAQVLERYRCLFCSLAPSTFILPESDISAAQQAARTQETWRTHFLSRA
GTNLRRALSYALLDSISARNADDALCEPDLGIMDGDDGGYTTPASLLEDE
RIADASVPCYALLGAPASQRSSSANLSAFESTSTVLLAEEAFDLLYQFHH
SSSTPEKDLLAKLLSEMQTIVTKTRTREIRHPQQLANSFERITERQNLPA
TVCQQLESLVSTAKKCAQACRDRALVGSKADALTTGLLSANQSKSLLDSR
TVVRPPRKCPRAPTFVNAVSHPHPPASLEQILGPTNIVPKNVYCLRHYHS
WRSAVVAKVMEKRQNSISKHQNVVSQVSAHVRSPRLRVTRARKDMIEIFN
DTEHTSALEAQDHYDAMTRSVCALLFAHAGFTHIKTNAMNLVADVVQQFI
MQMGSSLCVVRDNFDKVLDADVYPDGRLKTTEERIEEYRIICESGPKGSV
QDLVYYMKYELPRVMDSMIEAEKQLEHQVLCNNFGADIFRDPEELMLMEA
NVRAELANDPTSSHDKLCVNGQGVPVYEEDVKLEGEPFVLGYLCESVRLD
VLGGITVPTCAVYGRKTLSKDGVASGRIEKAQRSAVSKNNGASLNSTSTS
SALKASSKPMKSEANAIDTDDEPLCK*

mRNA from alignment at ScGOVlb_64:845559..847439+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7626.t1 ID=Gvermi7626.t1|Name=Gvermi7626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1881bp|location=Sequence derived from alignment at ScGOVlb_64:845559..847439+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATGCCGCCCAGGTCTTAGAGCGATACCGCTGCTTGTTTTGCTCTCT
AGCACCTTCTACCTTCATTCTTCCCGAATCCGATATTTCAGCTGCGCAGC
AAGCGGCACGCACGCAAGAGACGTGGCGAACGCATTTCCTTTCTCGTGCA
GGCACCAACTTGCGCCGCGCATTGTCCTATGCTCTCCTGGACTCCATATC
CGCTCGTAATGCAGACGATGCACTATGCGAGCCTGACCTGGGCATCATGG
ACGGCGATGACGGCGGTTACACTACACCAGCTTCCCTGCTTGAGGACGAG
AGAATCGCTGATGCTTCAGTGCCCTGTTATGCTCTTTTGGGAGCGCCGGC
TTCTCAACGCTCTTCTTCAGCAAATTTATCGGCGTTCGAATCAACTTCTA
CCGTGCTTCTCGCTGAAGAGGCATTCGATCTTCTGTACCAATTCCATCAT
TCGTCGTCGACTCCCGAGAAAGACCTGCTTGCAAAGTTGCTTTCTGAAAT
GCAAACTATTGTTACCAAAACGCGAACGAGGGAAATTCGCCACCCGCAGC
AACTTGCAAACTCTTTTGAGCGTATAACTGAGAGACAGAACTTGCCTGCG
ACAGTATGCCAGCAACTCGAAAGTTTAGTCTCCACGGCCAAAAAGTGCGC
ACAAGCCTGTCGTGATCGAGCTCTGGTTGGCTCCAAAGCTGACGCTTTAA
CGACTGGGCTTCTTTCCGCAAACCAATCCAAGTCGTTGCTTGATTCCAGA
ACAGTGGTGCGTCCACCCCGCAAGTGTCCTCGCGCTCCAACGTTCGTGAA
TGCTGTCTCTCATCCTCATCCACCAGCTTCATTGGAACAAATCTTGGGGC
CGACAAATATCGTCCCGAAAAATGTGTATTGCCTGCGTCACTATCATTCG
TGGCGTTCGGCGGTAGTTGCCAAGGTTATGGAGAAGCGTCAAAATTCAAT
TTCAAAGCATCAAAATGTTGTATCACAAGTCAGTGCCCACGTTAGGAGTC
CGCGACTGCGGGTCACAAGGGCACGGAAAGATATGATTGAAATATTCAAT
GATACGGAGCATACGTCTGCCTTGGAAGCTCAAGATCACTACGATGCTAT
GACGCGTTCTGTCTGTGCACTACTGTTTGCACATGCCGGTTTTACACATA
TCAAAACAAACGCAATGAACCTCGTGGCGGATGTGGTTCAGCAGTTCATA
ATGCAAATGGGATCTAGTTTGTGCGTGGTCCGAGACAATTTTGACAAAGT
TTTAGATGCAGATGTTTACCCAGATGGAAGACTGAAGACTACCGAGGAGA
GAATTGAAGAGTACAGAATCATATGCGAATCAGGCCCAAAGGGTAGTGTT
CAAGATTTGGTGTATTATATGAAATATGAGCTGCCCCGCGTTATGGACAG
TATGATAGAGGCTGAAAAACAACTCGAACATCAAGTTCTCTGCAATAACT
TTGGTGCAGATATCTTTCGAGACCCGGAGGAATTAATGCTTATGGAGGCT
AATGTACGCGCAGAGCTTGCTAATGACCCCACATCTTCTCACGACAAACT
CTGTGTAAATGGGCAGGGCGTACCAGTGTATGAAGAAGATGTGAAGCTCG
AAGGCGAGCCATTTGTACTCGGGTACCTTTGTGAATCTGTGCGTTTAGAT
GTTCTTGGGGGCATAACCGTTCCCACATGCGCTGTGTACGGGAGAAAGAC
CTTGAGCAAGGACGGCGTTGCGAGCGGGCGAATTGAGAAAGCTCAACGGT
CTGCTGTGTCGAAGAACAATGGCGCTTCATTGAACAGTACATCGACCTCT
TCAGCTCTAAAAGCCTCTTCTAAGCCGATGAAGTCAGAAGCAAACGCTAT
AGATACAGATGACGAACCACTGTGCAAATGA

Coding sequence (CDS) from alignment at ScGOVlb_64:845559..847439+

>Gvermi7626.t1 ID=Gvermi7626.t1|Name=Gvermi7626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1881bp|location=Sequence derived from alignment at ScGOVlb_64:845559..847439+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATGCCGCCCAGGTCTTAGAGCGATACCGCTGCTTGTTTTGCTCTCT
AGCACCTTCTACCTTCATTCTTCCCGAATCCGATATTTCAGCTGCGCAGC
AAGCGGCACGCACGCAAGAGACGTGGCGAACGCATTTCCTTTCTCGTGCA
GGCACCAACTTGCGCCGCGCATTGTCCTATGCTCTCCTGGACTCCATATC
CGCTCGTAATGCAGACGATGCACTATGCGAGCCTGACCTGGGCATCATGG
ACGGCGATGACGGCGGTTACACTACACCAGCTTCCCTGCTTGAGGACGAG
AGAATCGCTGATGCTTCAGTGCCCTGTTATGCTCTTTTGGGAGCGCCGGC
TTCTCAACGCTCTTCTTCAGCAAATTTATCGGCGTTCGAATCAACTTCTA
CCGTGCTTCTCGCTGAAGAGGCATTCGATCTTCTGTACCAATTCCATCAT
TCGTCGTCGACTCCCGAGAAAGACCTGCTTGCAAAGTTGCTTTCTGAAAT
GCAAACTATTGTTACCAAAACGCGAACGAGGGAAATTCGCCACCCGCAGC
AACTTGCAAACTCTTTTGAGCGTATAACTGAGAGACAGAACTTGCCTGCG
ACAGTATGCCAGCAACTCGAAAGTTTAGTCTCCACGGCCAAAAAGTGCGC
ACAAGCCTGTCGTGATCGAGCTCTGGTTGGCTCCAAAGCTGACGCTTTAA
CGACTGGGCTTCTTTCCGCAAACCAATCCAAGTCGTTGCTTGATTCCAGA
ACAGTGGTGCGTCCACCCCGCAAGTGTCCTCGCGCTCCAACGTTCGTGAA
TGCTGTCTCTCATCCTCATCCACCAGCTTCATTGGAACAAATCTTGGGGC
CGACAAATATCGTCCCGAAAAATGTGTATTGCCTGCGTCACTATCATTCG
TGGCGTTCGGCGGTAGTTGCCAAGGTTATGGAGAAGCGTCAAAATTCAAT
TTCAAAGCATCAAAATGTTGTATCACAAGTCAGTGCCCACGTTAGGAGTC
CGCGACTGCGGGTCACAAGGGCACGGAAAGATATGATTGAAATATTCAAT
GATACGGAGCATACGTCTGCCTTGGAAGCTCAAGATCACTACGATGCTAT
GACGCGTTCTGTCTGTGCACTACTGTTTGCACATGCCGGTTTTACACATA
TCAAAACAAACGCAATGAACCTCGTGGCGGATGTGGTTCAGCAGTTCATA
ATGCAAATGGGATCTAGTTTGTGCGTGGTCCGAGACAATTTTGACAAAGT
TTTAGATGCAGATGTTTACCCAGATGGAAGACTGAAGACTACCGAGGAGA
GAATTGAAGAGTACAGAATCATATGCGAATCAGGCCCAAAGGGTAGTGTT
CAAGATTTGGTGTATTATATGAAATATGAGCTGCCCCGCGTTATGGACAG
TATGATAGAGGCTGAAAAACAACTCGAACATCAAGTTCTCTGCAATAACT
TTGGTGCAGATATCTTTCGAGACCCGGAGGAATTAATGCTTATGGAGGCT
AATGTACGCGCAGAGCTTGCTAATGACCCCACATCTTCTCACGACAAACT
CTGTGTAAATGGGCAGGGCGTACCAGTGTATGAAGAAGATGTGAAGCTCG
AAGGCGAGCCATTTGTACTCGGGTACCTTTGTGAATCTGTGCGTTTAGAT
GTTCTTGGGGGCATAACCGTTCCCACATGCGCTGTGTACGGGAGAAAGAC
CTTGAGCAAGGACGGCGTTGCGAGCGGGCGAATTGAGAAAGCTCAACGGT
CTGCTGTGTCGAAGAACAATGGCGCTTCATTGAACAGTACATCGACCTCT
TCAGCTCTAAAAGCCTCTTCTAAGCCGATGAAGTCAGAAGCAAACGCTAT
AGATACAGATGACGAACCACTGTGCAAATGA