Gvermi7623.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7623.t1
Unique NameGvermi7623.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:612525..613493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog985054.JQEZ01000003_gene1733
Preferred nameMA20_36465
PFAMsCyclase
Max annot lvl28211|Alphaproteobacteria
Evalue2.11e-148
EggNOG OGsCOG1878@1|root,COG1878@2|Bacteria,1MVWU@1224|Proteobacteria,2TUQ1@28211|Alphaproteobacteria
DescriptionMetal-dependent hydrolase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7623Gvermi7623Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 612525..613493 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7623.t1.start1Gvermi7623.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 612525..612527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7623.t1.CDS1Gvermi7623.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 612525..613493 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7623.t1.exon1Gvermi7623.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 612525..613493 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7623.t1.stop1Gvermi7623.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 613491..613493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7623.t1Gvermi7623.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 612525..613493 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7623.t1 ID=Gvermi7623.t1|Name=Gvermi7623.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=323bp
MITNLIIFGLCCSAAFSHECTCPTFDEANSQAISPWGSEDEIGAANRISP
ESVLAASQLIKTGNTYNLGIVIDADTPSFSPRTLSITILRPAQFGLGGSG
VNGLTYNDDILLGWLGTGSQIDGLGHIGIRGVHYNGFNVSEIVTTQGITK
LGLEKLPPLVTRGVLLDMASFYGVGIVSEGTAYTKEHIEAAARQQGVEIR
RGDTVLFHSGWLNLVDGADQNRTRFVSAEPGLGISGAEYLAEIGAVAVGA
DTWGVEVVPFERGVNCQFAAHQILLVRNGIFILENMDSREMVKDKVWEFM
FVLGVTRLRGTVQMMINPTAIH*
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spliced messenger RNA

>Gvermi7623.t1 ID=Gvermi7623.t1|Name=Gvermi7623.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=969bp|location=Sequence derived from alignment at ScGOVlb_64:612525..613493+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCACGAACCTCATCATATTCGGTTTATGCTGCTCAGCTGCATTTTC
TCATGAATGCACCTGCCCCACTTTTGATGAGGCAAATTCTCAGGCAATCT
CACCTTGGGGTTCAGAGGATGAAATTGGAGCTGCAAATCGCATCAGCCCA
GAAAGCGTACTGGCAGCATCACAGCTGATCAAAACAGGAAACACATACAA
CCTTGGCATTGTCATCGACGCGGATACCCCATCATTCTCTCCTCGTACAT
TGAGCATCACTATCTTGCGCCCTGCTCAATTTGGACTTGGTGGGTCTGGT
GTCAACGGTCTCACCTACAATGATGACATATTACTCGGATGGCTCGGTAC
TGGCTCTCAAATAGACGGCCTCGGTCACATTGGAATAAGAGGTGTTCATT
ACAATGGTTTTAACGTTTCTGAAATTGTGACGACGCAGGGCATTACCAAA
CTGGGCCTTGAAAAGCTGCCGCCATTAGTGACTCGCGGAGTATTGTTGGA
TATGGCCTCATTCTATGGTGTGGGCATTGTGAGCGAAGGCACTGCCTACA
CGAAGGAACACATTGAGGCAGCTGCCAGACAGCAAGGGGTAGAAATCCGT
CGAGGAGATACAGTTCTGTTTCATTCGGGGTGGTTGAACTTGGTGGACGG
TGCAGACCAGAATCGTACACGCTTTGTCAGTGCCGAGCCCGGCCTGGGTA
TTTCCGGGGCCGAGTATCTCGCTGAAATTGGCGCAGTTGCCGTAGGAGCT
GATACCTGGGGTGTGGAGGTTGTGCCATTCGAAAGAGGCGTGAATTGTCA
ATTTGCAGCACACCAAATTTTGCTTGTGCGTAATGGTATTTTTATCCTAG
AAAACATGGACAGCCGTGAAATGGTCAAAGATAAGGTTTGGGAATTCATG
TTTGTTCTTGGTGTTACACGCTTGAGAGGAACGGTTCAAATGATGATCAA
TCCCACTGCAATTCACTAG
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protein sequence of Gvermi7623.t1

>Gvermi7623.t1 ID=Gvermi7623.t1|Name=Gvermi7623.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=323bp
MITNLIIFGLCCSAAFSHECTCPTFDEANSQAISPWGSEDEIGAANRISP
ESVLAASQLIKTGNTYNLGIVIDADTPSFSPRTLSITILRPAQFGLGGSG
VNGLTYNDDILLGWLGTGSQIDGLGHIGIRGVHYNGFNVSEIVTTQGITK
LGLEKLPPLVTRGVLLDMASFYGVGIVSEGTAYTKEHIEAAARQQGVEIR
RGDTVLFHSGWLNLVDGADQNRTRFVSAEPGLGISGAEYLAEIGAVAVGA
DTWGVEVVPFERGVNCQFAAHQILLVRNGIFILENMDSREMVKDKVWEFM
FVLGVTRLRGTVQMMINPTAIH*
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mRNA from alignment at ScGOVlb_64:612525..613493+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7623.t1 ID=Gvermi7623.t1|Name=Gvermi7623.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=969bp|location=Sequence derived from alignment at ScGOVlb_64:612525..613493+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCACGAACCTCATCATATTCGGTTTATGCTGCTCAGCTGCATTTTC
TCATGAATGCACCTGCCCCACTTTTGATGAGGCAAATTCTCAGGCAATCT
CACCTTGGGGTTCAGAGGATGAAATTGGAGCTGCAAATCGCATCAGCCCA
GAAAGCGTACTGGCAGCATCACAGCTGATCAAAACAGGAAACACATACAA
CCTTGGCATTGTCATCGACGCGGATACCCCATCATTCTCTCCTCGTACAT
TGAGCATCACTATCTTGCGCCCTGCTCAATTTGGACTTGGTGGGTCTGGT
GTCAACGGTCTCACCTACAATGATGACATATTACTCGGATGGCTCGGTAC
TGGCTCTCAAATAGACGGCCTCGGTCACATTGGAATAAGAGGTGTTCATT
ACAATGGTTTTAACGTTTCTGAAATTGTGACGACGCAGGGCATTACCAAA
CTGGGCCTTGAAAAGCTGCCGCCATTAGTGACTCGCGGAGTATTGTTGGA
TATGGCCTCATTCTATGGTGTGGGCATTGTGAGCGAAGGCACTGCCTACA
CGAAGGAACACATTGAGGCAGCTGCCAGACAGCAAGGGGTAGAAATCCGT
CGAGGAGATACAGTTCTGTTTCATTCGGGGTGGTTGAACTTGGTGGACGG
TGCAGACCAGAATCGTACACGCTTTGTCAGTGCCGAGCCCGGCCTGGGTA
TTTCCGGGGCCGAGTATCTCGCTGAAATTGGCGCAGTTGCCGTAGGAGCT
GATACCTGGGGTGTGGAGGTTGTGCCATTCGAAAGAGGCGTGAATTGTCA
ATTTGCAGCACACCAAATTTTGCTTGTGCGTAATGGTATTTTTATCCTAG
AAAACATGGACAGCCGTGAAATGGTCAAAGATAAGGTTTGGGAATTCATG
TTTGTTCTTGGTGTTACACGCTTGAGAGGAACGGTTCAAATGATGATCAA
TCCCACTGCAATTCACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:612525..613493+

>Gvermi7623.t1 ID=Gvermi7623.t1|Name=Gvermi7623.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=969bp|location=Sequence derived from alignment at ScGOVlb_64:612525..613493+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCACGAACCTCATCATATTCGGTTTATGCTGCTCAGCTGCATTTTC
TCATGAATGCACCTGCCCCACTTTTGATGAGGCAAATTCTCAGGCAATCT
CACCTTGGGGTTCAGAGGATGAAATTGGAGCTGCAAATCGCATCAGCCCA
GAAAGCGTACTGGCAGCATCACAGCTGATCAAAACAGGAAACACATACAA
CCTTGGCATTGTCATCGACGCGGATACCCCATCATTCTCTCCTCGTACAT
TGAGCATCACTATCTTGCGCCCTGCTCAATTTGGACTTGGTGGGTCTGGT
GTCAACGGTCTCACCTACAATGATGACATATTACTCGGATGGCTCGGTAC
TGGCTCTCAAATAGACGGCCTCGGTCACATTGGAATAAGAGGTGTTCATT
ACAATGGTTTTAACGTTTCTGAAATTGTGACGACGCAGGGCATTACCAAA
CTGGGCCTTGAAAAGCTGCCGCCATTAGTGACTCGCGGAGTATTGTTGGA
TATGGCCTCATTCTATGGTGTGGGCATTGTGAGCGAAGGCACTGCCTACA
CGAAGGAACACATTGAGGCAGCTGCCAGACAGCAAGGGGTAGAAATCCGT
CGAGGAGATACAGTTCTGTTTCATTCGGGGTGGTTGAACTTGGTGGACGG
TGCAGACCAGAATCGTACACGCTTTGTCAGTGCCGAGCCCGGCCTGGGTA
TTTCCGGGGCCGAGTATCTCGCTGAAATTGGCGCAGTTGCCGTAGGAGCT
GATACCTGGGGTGTGGAGGTTGTGCCATTCGAAAGAGGCGTGAATTGTCA
ATTTGCAGCACACCAAATTTTGCTTGTGCGTAATGGTATTTTTATCCTAG
AAAACATGGACAGCCGTGAAATGGTCAAAGATAAGGTTTGGGAATTCATG
TTTGTTCTTGGTGTTACACGCTTGAGAGGAACGGTTCAAATGATGATCAA
TCCCACTGCAATTCACTAG
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