Gvermi7622.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7622.t1
Unique NameGvermi7622.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length389
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:609406..610572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_04553T0
Max annot lvl4751|Fungi
Evalue1.61e-07
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,3ARBF@33154|Opisthokonta,3PFVF@4751|Fungi
DescriptionAllomyces macrogynus ATCC 38327
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7622Gvermi7622Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 609406..610572 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7622.t1.start1Gvermi7622.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 609406..609408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7622.t1.CDS1Gvermi7622.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 609406..610572 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7622.t1.exon1Gvermi7622.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 609406..610572 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7622.t1.stop1Gvermi7622.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 610570..610572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7622.t1Gvermi7622.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 609406..610572 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7622.t1 ID=Gvermi7622.t1|Name=Gvermi7622.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=389bp
MQKKSTVLFLITVHAAVCAVEAHQAIAYPWPISNDGACRIGKFKNCPGPC
PTGDLRLDQTPDSPSITVRRGQKLDINIKRNNHAGGFTRWAMVHVHHMHD
KKKHEQAAFYYTCGDQRITSCNANNRNRDCTYDRRRKYYRHQIRIPEVYG
NGVYVLGYAWYGGTQENGQNGDFGDYYDCMYVQVKGGPYKKWYQPTFKMG
DSTTGKNGLCRARTNWIGDCWKEPCRHKKKARNLIPWQFSKGKKPGKLSN
VAFRKPYTIRNAGKTAPRLQGISIRLADNPGQVKASSKFGSVAKLVVQKN
SRITATCDVSGAVRHVIFYRNGLPIRKDEVGPFGIAGVYWIKRRGKFILR
FHPWKVALVSDFYSLSCVVYGKDGSVQYAKLDVQQTLK*
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spliced messenger RNA

>Gvermi7622.t1 ID=Gvermi7622.t1|Name=Gvermi7622.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at ScGOVlb_64:609406..610572+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAAGAAAAGCACTGTGCTGTTCTTGATTACGGTCCATGCTGCAGT
ATGCGCTGTCGAAGCTCATCAGGCAATTGCGTATCCCTGGCCCATATCGA
ATGACGGAGCATGCCGCATTGGAAAGTTTAAGAACTGTCCTGGTCCGTGT
CCAACTGGCGATCTTCGCCTAGATCAAACACCAGACTCGCCATCTATCAC
TGTTCGTCGTGGTCAGAAACTTGACATAAACATCAAACGCAACAATCATG
CAGGTGGCTTTACAAGGTGGGCCATGGTGCACGTCCATCACATGCACGAT
AAAAAGAAACATGAACAAGCAGCTTTTTACTACACATGCGGTGATCAACG
GATCACGAGCTGTAACGCGAATAACCGGAATCGGGACTGTACGTATGACA
GACGAAGAAAATACTACCGACATCAAATTCGCATCCCGGAAGTGTATGGA
AACGGAGTATACGTGCTAGGCTATGCTTGGTACGGGGGAACGCAGGAAAA
TGGGCAAAACGGGGATTTTGGCGACTACTATGATTGCATGTATGTTCAAG
TGAAAGGTGGCCCGTACAAAAAGTGGTATCAACCCACATTTAAAATGGGG
GATTCAACGACCGGAAAGAATGGACTTTGTAGAGCTCGGACCAACTGGAT
AGGGGATTGCTGGAAGGAACCTTGCAGACATAAAAAGAAAGCGCGGAACC
TCATCCCTTGGCAATTTTCCAAAGGAAAAAAGCCGGGCAAACTTTCGAAT
GTCGCGTTCCGGAAGCCGTACACAATCAGGAACGCTGGCAAGACTGCGCC
CCGGTTACAAGGTATTTCCATCCGTCTTGCGGACAATCCTGGACAAGTGA
AAGCAAGTTCGAAATTTGGGTCTGTTGCAAAGCTTGTGGTGCAGAAAAAC
AGCAGAATTACGGCCACTTGTGACGTTTCTGGAGCAGTTCGACACGTTAT
ATTTTATCGAAACGGGCTACCCATTAGAAAGGACGAAGTTGGCCCTTTTG
GCATCGCCGGTGTGTATTGGATTAAAAGAAGAGGCAAGTTTATATTGAGG
TTTCATCCATGGAAAGTTGCCTTGGTGAGCGATTTTTATTCGCTATCTTG
TGTGGTTTACGGTAAGGACGGCAGCGTGCAATACGCAAAATTGGACGTGC
AGCAAACTTTAAAGTAG
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protein sequence of Gvermi7622.t1

>Gvermi7622.t1 ID=Gvermi7622.t1|Name=Gvermi7622.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=389bp
MQKKSTVLFLITVHAAVCAVEAHQAIAYPWPISNDGACRIGKFKNCPGPC
PTGDLRLDQTPDSPSITVRRGQKLDINIKRNNHAGGFTRWAMVHVHHMHD
KKKHEQAAFYYTCGDQRITSCNANNRNRDCTYDRRRKYYRHQIRIPEVYG
NGVYVLGYAWYGGTQENGQNGDFGDYYDCMYVQVKGGPYKKWYQPTFKMG
DSTTGKNGLCRARTNWIGDCWKEPCRHKKKARNLIPWQFSKGKKPGKLSN
VAFRKPYTIRNAGKTAPRLQGISIRLADNPGQVKASSKFGSVAKLVVQKN
SRITATCDVSGAVRHVIFYRNGLPIRKDEVGPFGIAGVYWIKRRGKFILR
FHPWKVALVSDFYSLSCVVYGKDGSVQYAKLDVQQTLK*
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mRNA from alignment at ScGOVlb_64:609406..610572+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7622.t1 ID=Gvermi7622.t1|Name=Gvermi7622.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at ScGOVlb_64:609406..610572+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGAAGAAAAGCACTGTGCTGTTCTTGATTACGGTCCATGCTGCAGT
ATGCGCTGTCGAAGCTCATCAGGCAATTGCGTATCCCTGGCCCATATCGA
ATGACGGAGCATGCCGCATTGGAAAGTTTAAGAACTGTCCTGGTCCGTGT
CCAACTGGCGATCTTCGCCTAGATCAAACACCAGACTCGCCATCTATCAC
TGTTCGTCGTGGTCAGAAACTTGACATAAACATCAAACGCAACAATCATG
CAGGTGGCTTTACAAGGTGGGCCATGGTGCACGTCCATCACATGCACGAT
AAAAAGAAACATGAACAAGCAGCTTTTTACTACACATGCGGTGATCAACG
GATCACGAGCTGTAACGCGAATAACCGGAATCGGGACTGTACGTATGACA
GACGAAGAAAATACTACCGACATCAAATTCGCATCCCGGAAGTGTATGGA
AACGGAGTATACGTGCTAGGCTATGCTTGGTACGGGGGAACGCAGGAAAA
TGGGCAAAACGGGGATTTTGGCGACTACTATGATTGCATGTATGTTCAAG
TGAAAGGTGGCCCGTACAAAAAGTGGTATCAACCCACATTTAAAATGGGG
GATTCAACGACCGGAAAGAATGGACTTTGTAGAGCTCGGACCAACTGGAT
AGGGGATTGCTGGAAGGAACCTTGCAGACATAAAAAGAAAGCGCGGAACC
TCATCCCTTGGCAATTTTCCAAAGGAAAAAAGCCGGGCAAACTTTCGAAT
GTCGCGTTCCGGAAGCCGTACACAATCAGGAACGCTGGCAAGACTGCGCC
CCGGTTACAAGGTATTTCCATCCGTCTTGCGGACAATCCTGGACAAGTGA
AAGCAAGTTCGAAATTTGGGTCTGTTGCAAAGCTTGTGGTGCAGAAAAAC
AGCAGAATTACGGCCACTTGTGACGTTTCTGGAGCAGTTCGACACGTTAT
ATTTTATCGAAACGGGCTACCCATTAGAAAGGACGAAGTTGGCCCTTTTG
GCATCGCCGGTGTGTATTGGATTAAAAGAAGAGGCAAGTTTATATTGAGG
TTTCATCCATGGAAAGTTGCCTTGGTGAGCGATTTTTATTCGCTATCTTG
TGTGGTTTACGGTAAGGACGGCAGCGTGCAATACGCAAAATTGGACGTGC
AGCAAACTTTAAAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:609406..610572+

>Gvermi7622.t1 ID=Gvermi7622.t1|Name=Gvermi7622.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1167bp|location=Sequence derived from alignment at ScGOVlb_64:609406..610572+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGAAGAAAAGCACTGTGCTGTTCTTGATTACGGTCCATGCTGCAGT
ATGCGCTGTCGAAGCTCATCAGGCAATTGCGTATCCCTGGCCCATATCGA
ATGACGGAGCATGCCGCATTGGAAAGTTTAAGAACTGTCCTGGTCCGTGT
CCAACTGGCGATCTTCGCCTAGATCAAACACCAGACTCGCCATCTATCAC
TGTTCGTCGTGGTCAGAAACTTGACATAAACATCAAACGCAACAATCATG
CAGGTGGCTTTACAAGGTGGGCCATGGTGCACGTCCATCACATGCACGAT
AAAAAGAAACATGAACAAGCAGCTTTTTACTACACATGCGGTGATCAACG
GATCACGAGCTGTAACGCGAATAACCGGAATCGGGACTGTACGTATGACA
GACGAAGAAAATACTACCGACATCAAATTCGCATCCCGGAAGTGTATGGA
AACGGAGTATACGTGCTAGGCTATGCTTGGTACGGGGGAACGCAGGAAAA
TGGGCAAAACGGGGATTTTGGCGACTACTATGATTGCATGTATGTTCAAG
TGAAAGGTGGCCCGTACAAAAAGTGGTATCAACCCACATTTAAAATGGGG
GATTCAACGACCGGAAAGAATGGACTTTGTAGAGCTCGGACCAACTGGAT
AGGGGATTGCTGGAAGGAACCTTGCAGACATAAAAAGAAAGCGCGGAACC
TCATCCCTTGGCAATTTTCCAAAGGAAAAAAGCCGGGCAAACTTTCGAAT
GTCGCGTTCCGGAAGCCGTACACAATCAGGAACGCTGGCAAGACTGCGCC
CCGGTTACAAGGTATTTCCATCCGTCTTGCGGACAATCCTGGACAAGTGA
AAGCAAGTTCGAAATTTGGGTCTGTTGCAAAGCTTGTGGTGCAGAAAAAC
AGCAGAATTACGGCCACTTGTGACGTTTCTGGAGCAGTTCGACACGTTAT
ATTTTATCGAAACGGGCTACCCATTAGAAAGGACGAAGTTGGCCCTTTTG
GCATCGCCGGTGTGTATTGGATTAAAAGAAGAGGCAAGTTTATATTGAGG
TTTCATCCATGGAAAGTTGCCTTGGTGAGCGATTTTTATTCGCTATCTTG
TGTGGTTTACGGTAAGGACGGCAGCGTGCAATACGCAAAATTGGACGTGC
AGCAAACTTTAAAGTAG
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