Gvermi7620.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7620.t1
Unique NameGvermi7620.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:589843..590253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog242159.ABO96363
PFAMsHistone
Max annot lvl3041|Chlorophyta
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Evalue5.5e-81
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota,37TRG@33090|Viridiplantae,34HJ1@3041|Chlorophyta
Descriptionhistone H3
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7620Gvermi7620Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 589843..590253 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7620.t1.stop1Gvermi7620.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 589843..589845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7620.t1.CDS1Gvermi7620.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 589843..590253 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7620.t1.exon1Gvermi7620.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 589843..590253 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7620.t1.start1Gvermi7620.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 590251..590253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7620.t1Gvermi7620.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 589843..590253 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7620.t1 ID=Gvermi7620.t1|Name=Gvermi7620.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR
EIRKFQKSTELLIRKLPFQRLVREIAQDYKSDLRFQGSAVMALQEASEAY
LVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA*
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spliced messenger RNA

>Gvermi7620.t1 ID=Gvermi7620.t1|Name=Gvermi7620.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=411bp|location=Sequence derived from alignment at ScGOVlb_64:589843..590253- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGCACGAAGCAGACGGCTCGTAAATCCACTGGTGGCAAAGCGCC
CCGAAAGCAGCTTGCCACCAAGGCAGCGCGGAAGTCTGCTCCCGCCACAG
GCGGTGTGAAGAAGCCGCACCGCTTCCGACCTGGAACCGTCGCCCTCCGC
GAGATCCGCAAGTTTCAAAAGTCTACCGAGCTGCTTATCCGTAAGCTTCC
GTTCCAACGTCTGGTGCGCGAAATCGCCCAGGACTACAAGTCGGACCTGC
GCTTTCAAGGGAGCGCCGTCATGGCATTGCAGGAGGCTTCCGAAGCATAC
CTTGTTGGGTTGTTTGAGGACACTAATCTTTGCGCAATTCACGCGAAGCG
CGTCACTATCATGCCCAAGGACGTCCAACTGGCAAGAAGAATTCGCGGCG
AACGTGCCTAA
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protein sequence of Gvermi7620.t1

>Gvermi7620.t1 ID=Gvermi7620.t1|Name=Gvermi7620.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=137bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALR
EIRKFQKSTELLIRKLPFQRLVREIAQDYKSDLRFQGSAVMALQEASEAY
LVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRGERA*
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mRNA from alignment at ScGOVlb_64:589843..590253-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7620.t1 ID=Gvermi7620.t1|Name=Gvermi7620.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=411bp|location=Sequence derived from alignment at ScGOVlb_64:589843..590253- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGCACGAAGCAGACGGCTCGTAAATCCACTGGTGGCAAAGCGCC
CCGAAAGCAGCTTGCCACCAAGGCAGCGCGGAAGTCTGCTCCCGCCACAG
GCGGTGTGAAGAAGCCGCACCGCTTCCGACCTGGAACCGTCGCCCTCCGC
GAGATCCGCAAGTTTCAAAAGTCTACCGAGCTGCTTATCCGTAAGCTTCC
GTTCCAACGTCTGGTGCGCGAAATCGCCCAGGACTACAAGTCGGACCTGC
GCTTTCAAGGGAGCGCCGTCATGGCATTGCAGGAGGCTTCCGAAGCATAC
CTTGTTGGGTTGTTTGAGGACACTAATCTTTGCGCAATTCACGCGAAGCG
CGTCACTATCATGCCCAAGGACGTCCAACTGGCAAGAAGAATTCGCGGCG
AACGTGCCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_64:589843..590253-

>Gvermi7620.t1 ID=Gvermi7620.t1|Name=Gvermi7620.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=411bp|location=Sequence derived from alignment at ScGOVlb_64:589843..590253- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCGCACGAAGCAGACGGCTCGTAAATCCACTGGTGGCAAAGCGCC
CCGAAAGCAGCTTGCCACCAAGGCAGCGCGGAAGTCTGCTCCCGCCACAG
GCGGTGTGAAGAAGCCGCACCGCTTCCGACCTGGAACCGTCGCCCTCCGC
GAGATCCGCAAGTTTCAAAAGTCTACCGAGCTGCTTATCCGTAAGCTTCC
GTTCCAACGTCTGGTGCGCGAAATCGCCCAGGACTACAAGTCGGACCTGC
GCTTTCAAGGGAGCGCCGTCATGGCATTGCAGGAGGCTTCCGAAGCATAC
CTTGTTGGGTTGTTTGAGGACACTAATCTTTGCGCAATTCACGCGAAGCG
CGTCACTATCATGCCCAAGGACGTCCAACTGGCAAGAAGAATTCGCGGCG
AACGTGCCTAA
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