Gvermi7613.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7613.t1
Unique NameGvermi7613.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length574
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:457133..458854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7613Gvermi7613Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 457133..458854 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7613.t1.stop1Gvermi7613.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 457133..457135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7613.t1.CDS1Gvermi7613.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 457133..458854 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7613.t1.exon1Gvermi7613.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 457133..458854 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7613.t1.start1Gvermi7613.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 458852..458854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7613.t1Gvermi7613.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 457133..458854 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7613.t1 ID=Gvermi7613.t1|Name=Gvermi7613.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=574bp
MDTGIQVQFWNVLKYVLLTLILAPVAECAMARVTAWRHAKLVYNGHPIRL
KSSWLGNFSLHQEVETLHPSSRLWQVLSIFLALAIALPFEYGSGARSQLI
WSQQRSFSSSLATNSSNDLIFLAHNDPRQVECVNPKRLSEVGEFIFMEPT
QDKPPFLNGVLTLERVNNLLGDTVHKWAVLLVHSRNGDKDLQLYAGGKGG
QLALLVNPAEKGLLIADFESGALCKGFLDQEFSCYDMAGQFTLSQLTYSI
ASIRGGTIFLRTSFENAAKLYRFRDKWIFNSIGDPKVQANRLKQRPNETG
FQWLSRHRKENPFLSISTIELDSQVQSVDCQTSGSVQIRPLILRTGKSLG
DDEFGLNISGRGDIILVKGGGKLQTFLLTKAGDFLCAVDESNAICKSSEN
QTIYFLDKGEGVFEYTSVFGLQITRDLESPTDLAVLRSLMNSDATYHRNG
RAAFWDVQRLVESFAPLDGGARTITRTMDAKVAVSTGARVSGTVETWAVL
LYGSTLFLLLLLLCFVRLVPLTGITVEDTYRRVVWQRERGSEPLQTLKTA
PKIGFQVGETENSEHLIASYYLI*
back to top

spliced messenger RNA

>Gvermi7613.t1 ID=Gvermi7613.t1|Name=Gvermi7613.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1722bp|location=Sequence derived from alignment at ScGOVlb_64:457133..458854- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACTGGCATCCAAGTACAATTCTGGAACGTGCTAAAGTACGTCTT
GCTAACACTGATTCTCGCTCCGGTGGCCGAGTGCGCCATGGCCCGCGTCA
CAGCCTGGAGACACGCCAAACTCGTCTATAACGGCCATCCCATCCGACTG
AAATCCTCTTGGCTTGGGAACTTTTCCCTTCATCAGGAGGTGGAGACCCT
GCACCCGTCGAGCAGGTTATGGCAGGTGCTCTCTATCTTCCTCGCGCTCG
CTATTGCACTTCCATTCGAGTATGGCAGCGGCGCCAGATCGCAGCTCATC
TGGTCTCAACAGCGCTCTTTTTCTTCGTCTCTCGCAACCAATAGCTCAAA
CGACCTTATTTTTCTCGCTCACAATGATCCACGGCAGGTGGAGTGCGTAA
ACCCGAAACGACTTTCCGAGGTGGGTGAGTTTATCTTCATGGAACCGACG
CAGGACAAGCCGCCATTTCTCAACGGTGTCTTGACATTAGAACGAGTCAA
TAACCTTCTCGGTGACACGGTGCACAAATGGGCGGTGTTGCTTGTCCATT
CAAGAAATGGGGACAAGGACCTCCAACTTTATGCGGGTGGGAAAGGTGGA
CAACTAGCTCTCCTTGTAAACCCGGCAGAAAAGGGTTTGCTGATAGCTGA
TTTTGAGAGTGGCGCCCTTTGCAAAGGATTTCTAGATCAAGAGTTCTCAT
GCTATGATATGGCGGGGCAATTCACACTCTCACAATTGACGTATTCTATC
GCATCCATACGAGGAGGTACGATATTTCTAAGGACGAGCTTTGAAAACGC
AGCAAAACTGTACAGGTTCAGAGACAAATGGATATTTAACAGCATAGGAG
ACCCAAAGGTTCAAGCAAACCGTCTGAAGCAAAGGCCGAATGAAACAGGA
TTTCAGTGGCTATCGCGCCATAGAAAAGAAAATCCATTTTTATCTATATC
CACCATTGAGCTGGATTCGCAAGTGCAATCAGTAGACTGTCAGACCTCAG
GTTCTGTGCAAATTCGACCACTCATATTGCGCACAGGAAAATCACTTGGC
GATGATGAATTTGGACTGAATATCTCAGGCAGAGGCGACATCATTTTGGT
GAAAGGCGGCGGGAAGTTACAGACATTTCTATTGACAAAAGCCGGCGATT
TTTTGTGCGCCGTGGACGAGTCAAACGCAATTTGCAAGAGCTCCGAAAAC
CAAACAATCTATTTTCTCGACAAAGGGGAAGGGGTTTTTGAGTACACGTC
AGTATTTGGACTGCAAATAACGCGAGATTTAGAAAGCCCGACCGATCTTG
CGGTTTTAAGATCCCTGATGAACAGCGATGCTACGTACCATAGAAATGGA
CGTGCAGCTTTCTGGGATGTGCAACGGCTTGTGGAATCTTTCGCACCGCT
CGATGGAGGTGCTCGGACAATCACGAGAACAATGGACGCAAAAGTTGCCG
TCTCCACCGGAGCTCGAGTCTCCGGAACAGTAGAAACCTGGGCAGTTTTG
CTATATGGGTCCACTTTGTTTTTGCTATTATTGCTTTTGTGTTTTGTCCG
ACTCGTGCCTCTGACGGGAATTACGGTGGAGGACACGTATAGAAGGGTAG
TGTGGCAGAGAGAGAGGGGTTCTGAGCCATTACAAACTCTGAAGACAGCG
CCGAAAATAGGATTTCAGGTTGGGGAAACTGAAAATAGTGAACATTTAAT
AGCAAGCTATTATCTCATATAA
back to top

protein sequence of Gvermi7613.t1

>Gvermi7613.t1 ID=Gvermi7613.t1|Name=Gvermi7613.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=574bp
MDTGIQVQFWNVLKYVLLTLILAPVAECAMARVTAWRHAKLVYNGHPIRL
KSSWLGNFSLHQEVETLHPSSRLWQVLSIFLALAIALPFEYGSGARSQLI
WSQQRSFSSSLATNSSNDLIFLAHNDPRQVECVNPKRLSEVGEFIFMEPT
QDKPPFLNGVLTLERVNNLLGDTVHKWAVLLVHSRNGDKDLQLYAGGKGG
QLALLVNPAEKGLLIADFESGALCKGFLDQEFSCYDMAGQFTLSQLTYSI
ASIRGGTIFLRTSFENAAKLYRFRDKWIFNSIGDPKVQANRLKQRPNETG
FQWLSRHRKENPFLSISTIELDSQVQSVDCQTSGSVQIRPLILRTGKSLG
DDEFGLNISGRGDIILVKGGGKLQTFLLTKAGDFLCAVDESNAICKSSEN
QTIYFLDKGEGVFEYTSVFGLQITRDLESPTDLAVLRSLMNSDATYHRNG
RAAFWDVQRLVESFAPLDGGARTITRTMDAKVAVSTGARVSGTVETWAVL
LYGSTLFLLLLLLCFVRLVPLTGITVEDTYRRVVWQRERGSEPLQTLKTA
PKIGFQVGETENSEHLIASYYLI*
back to top

mRNA from alignment at ScGOVlb_64:457133..458854-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7613.t1 ID=Gvermi7613.t1|Name=Gvermi7613.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1722bp|location=Sequence derived from alignment at ScGOVlb_64:457133..458854- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATACTGGCATCCAAGTACAATTCTGGAACGTGCTAAAGTACGTCTT
GCTAACACTGATTCTCGCTCCGGTGGCCGAGTGCGCCATGGCCCGCGTCA
CAGCCTGGAGACACGCCAAACTCGTCTATAACGGCCATCCCATCCGACTG
AAATCCTCTTGGCTTGGGAACTTTTCCCTTCATCAGGAGGTGGAGACCCT
GCACCCGTCGAGCAGGTTATGGCAGGTGCTCTCTATCTTCCTCGCGCTCG
CTATTGCACTTCCATTCGAGTATGGCAGCGGCGCCAGATCGCAGCTCATC
TGGTCTCAACAGCGCTCTTTTTCTTCGTCTCTCGCAACCAATAGCTCAAA
CGACCTTATTTTTCTCGCTCACAATGATCCACGGCAGGTGGAGTGCGTAA
ACCCGAAACGACTTTCCGAGGTGGGTGAGTTTATCTTCATGGAACCGACG
CAGGACAAGCCGCCATTTCTCAACGGTGTCTTGACATTAGAACGAGTCAA
TAACCTTCTCGGTGACACGGTGCACAAATGGGCGGTGTTGCTTGTCCATT
CAAGAAATGGGGACAAGGACCTCCAACTTTATGCGGGTGGGAAAGGTGGA
CAACTAGCTCTCCTTGTAAACCCGGCAGAAAAGGGTTTGCTGATAGCTGA
TTTTGAGAGTGGCGCCCTTTGCAAAGGATTTCTAGATCAAGAGTTCTCAT
GCTATGATATGGCGGGGCAATTCACACTCTCACAATTGACGTATTCTATC
GCATCCATACGAGGAGGTACGATATTTCTAAGGACGAGCTTTGAAAACGC
AGCAAAACTGTACAGGTTCAGAGACAAATGGATATTTAACAGCATAGGAG
ACCCAAAGGTTCAAGCAAACCGTCTGAAGCAAAGGCCGAATGAAACAGGA
TTTCAGTGGCTATCGCGCCATAGAAAAGAAAATCCATTTTTATCTATATC
CACCATTGAGCTGGATTCGCAAGTGCAATCAGTAGACTGTCAGACCTCAG
GTTCTGTGCAAATTCGACCACTCATATTGCGCACAGGAAAATCACTTGGC
GATGATGAATTTGGACTGAATATCTCAGGCAGAGGCGACATCATTTTGGT
GAAAGGCGGCGGGAAGTTACAGACATTTCTATTGACAAAAGCCGGCGATT
TTTTGTGCGCCGTGGACGAGTCAAACGCAATTTGCAAGAGCTCCGAAAAC
CAAACAATCTATTTTCTCGACAAAGGGGAAGGGGTTTTTGAGTACACGTC
AGTATTTGGACTGCAAATAACGCGAGATTTAGAAAGCCCGACCGATCTTG
CGGTTTTAAGATCCCTGATGAACAGCGATGCTACGTACCATAGAAATGGA
CGTGCAGCTTTCTGGGATGTGCAACGGCTTGTGGAATCTTTCGCACCGCT
CGATGGAGGTGCTCGGACAATCACGAGAACAATGGACGCAAAAGTTGCCG
TCTCCACCGGAGCTCGAGTCTCCGGAACAGTAGAAACCTGGGCAGTTTTG
CTATATGGGTCCACTTTGTTTTTGCTATTATTGCTTTTGTGTTTTGTCCG
ACTCGTGCCTCTGACGGGAATTACGGTGGAGGACACGTATAGAAGGGTAG
TGTGGCAGAGAGAGAGGGGTTCTGAGCCATTACAAACTCTGAAGACAGCG
CCGAAAATAGGATTTCAGGTTGGGGAAACTGAAAATAGTGAACATTTAAT
AGCAAGCTATTATCTCATATAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_64:457133..458854-

>Gvermi7613.t1 ID=Gvermi7613.t1|Name=Gvermi7613.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1722bp|location=Sequence derived from alignment at ScGOVlb_64:457133..458854- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATACTGGCATCCAAGTACAATTCTGGAACGTGCTAAAGTACGTCTT
GCTAACACTGATTCTCGCTCCGGTGGCCGAGTGCGCCATGGCCCGCGTCA
CAGCCTGGAGACACGCCAAACTCGTCTATAACGGCCATCCCATCCGACTG
AAATCCTCTTGGCTTGGGAACTTTTCCCTTCATCAGGAGGTGGAGACCCT
GCACCCGTCGAGCAGGTTATGGCAGGTGCTCTCTATCTTCCTCGCGCTCG
CTATTGCACTTCCATTCGAGTATGGCAGCGGCGCCAGATCGCAGCTCATC
TGGTCTCAACAGCGCTCTTTTTCTTCGTCTCTCGCAACCAATAGCTCAAA
CGACCTTATTTTTCTCGCTCACAATGATCCACGGCAGGTGGAGTGCGTAA
ACCCGAAACGACTTTCCGAGGTGGGTGAGTTTATCTTCATGGAACCGACG
CAGGACAAGCCGCCATTTCTCAACGGTGTCTTGACATTAGAACGAGTCAA
TAACCTTCTCGGTGACACGGTGCACAAATGGGCGGTGTTGCTTGTCCATT
CAAGAAATGGGGACAAGGACCTCCAACTTTATGCGGGTGGGAAAGGTGGA
CAACTAGCTCTCCTTGTAAACCCGGCAGAAAAGGGTTTGCTGATAGCTGA
TTTTGAGAGTGGCGCCCTTTGCAAAGGATTTCTAGATCAAGAGTTCTCAT
GCTATGATATGGCGGGGCAATTCACACTCTCACAATTGACGTATTCTATC
GCATCCATACGAGGAGGTACGATATTTCTAAGGACGAGCTTTGAAAACGC
AGCAAAACTGTACAGGTTCAGAGACAAATGGATATTTAACAGCATAGGAG
ACCCAAAGGTTCAAGCAAACCGTCTGAAGCAAAGGCCGAATGAAACAGGA
TTTCAGTGGCTATCGCGCCATAGAAAAGAAAATCCATTTTTATCTATATC
CACCATTGAGCTGGATTCGCAAGTGCAATCAGTAGACTGTCAGACCTCAG
GTTCTGTGCAAATTCGACCACTCATATTGCGCACAGGAAAATCACTTGGC
GATGATGAATTTGGACTGAATATCTCAGGCAGAGGCGACATCATTTTGGT
GAAAGGCGGCGGGAAGTTACAGACATTTCTATTGACAAAAGCCGGCGATT
TTTTGTGCGCCGTGGACGAGTCAAACGCAATTTGCAAGAGCTCCGAAAAC
CAAACAATCTATTTTCTCGACAAAGGGGAAGGGGTTTTTGAGTACACGTC
AGTATTTGGACTGCAAATAACGCGAGATTTAGAAAGCCCGACCGATCTTG
CGGTTTTAAGATCCCTGATGAACAGCGATGCTACGTACCATAGAAATGGA
CGTGCAGCTTTCTGGGATGTGCAACGGCTTGTGGAATCTTTCGCACCGCT
CGATGGAGGTGCTCGGACAATCACGAGAACAATGGACGCAAAAGTTGCCG
TCTCCACCGGAGCTCGAGTCTCCGGAACAGTAGAAACCTGGGCAGTTTTG
CTATATGGGTCCACTTTGTTTTTGCTATTATTGCTTTTGTGTTTTGTCCG
ACTCGTGCCTCTGACGGGAATTACGGTGGAGGACACGTATAGAAGGGTAG
TGTGGCAGAGAGAGAGGGGTTCTGAGCCATTACAAACTCTGAAGACAGCG
CCGAAAATAGGATTTCAGGTTGGGGAAACTGAAAATAGTGAACATTTAAT
AGCAAGCTATTATCTCATATAA
back to top