Gvermi7611.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7611.t1
Unique NameGvermi7611.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_64contigScGOVlb_64:409123..410043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6087.XP_004207085.1
Max annot lvl33208|Metazoa
Evalue4.29e-14
EggNOG OGs2D376@1|root,2SQFQ@2759|Eukaryota,3ANNG@33154|Opisthokonta,3C1I6@33208|Metazoa
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7611Gvermi7611Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_64 409123..410043 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7611.t1.stop1Gvermi7611.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_64 409123..409125 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7611.t1.CDS1Gvermi7611.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_64 409123..410043 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7611.t1.exon1Gvermi7611.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_64 409123..410043 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7611.t1.start1Gvermi7611.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_64 410041..410043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7611.t1Gvermi7611.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_64 409123..410043 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7611.t1 ID=Gvermi7611.t1|Name=Gvermi7611.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=307bp
MNCDFRGNDIGSAQMPGNDCSRACDLKSDCSHFAWTRYNGGTCWFKSGRS
VSQSSATPNSDPGAVCGILGSLLIANGQDSFGMTPHDPVADARPYLPVFR
YDDDADGWCFPDDKEARPSRDGVCNNRFKRDAPVYVHSKKCGQYTVYQFN
LWYGWQKGCFGDIGSHGNDNEYVQIWTLGPSGPVARVRYNQHNGYYFREP
GRGAEMRGSRAVIYIGKISHGAYHRGCKGRKFLQTFIPNSGTDYCVGGCG
YWDDFRNSEDSNFVMDSGSLRKDPSPRDIDCNAPQCTPGHNSRRSLASAA
CFGLDN*
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spliced messenger RNA

>Gvermi7611.t1 ID=Gvermi7611.t1|Name=Gvermi7611.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=921bp|location=Sequence derived from alignment at ScGOVlb_64:409123..410043- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTGCGATTTTCGAGGGAATGATATCGGCTCTGCCCAAATGCCCGG
GAACGACTGTTCCCGAGCTTGCGATCTAAAGAGCGACTGTTCCCATTTCG
CTTGGACCAGATACAATGGGGGAACATGCTGGTTCAAGTCCGGCCGCAGC
GTCTCTCAATCTTCAGCGACTCCGAACTCTGACCCTGGAGCAGTATGTGG
CATTCTCGGCAGTCTGCTAATCGCGAACGGGCAGGACTCATTTGGTATGA
CCCCTCATGATCCCGTGGCGGATGCAAGACCGTATTTACCAGTCTTTCGA
TATGACGACGATGCTGATGGATGGTGTTTTCCAGACGACAAGGAAGCTCG
TCCATCACGAGATGGGGTTTGCAACAACAGATTCAAACGCGATGCTCCGG
TTTATGTGCATTCCAAGAAATGTGGCCAGTACACCGTGTATCAGTTCAAC
CTGTGGTACGGCTGGCAGAAAGGATGCTTCGGTGACATTGGCAGCCATGG
AAATGACAACGAATATGTTCAAATCTGGACCCTGGGACCGTCGGGACCTG
TGGCGCGAGTCAGATATAATCAACATAATGGATACTACTTCAGAGAGCCG
GGAAGAGGTGCAGAGATGCGTGGAAGTCGTGCTGTGATCTACATCGGAAA
GATTTCCCATGGCGCATATCATCGTGGATGTAAAGGCCGTAAATTTTTGC
AAACATTCATTCCAAATAGTGGAACGGACTATTGTGTCGGTGGATGCGGT
TATTGGGATGATTTCAGAAATAGCGAGGATAGTAACTTTGTCATGGATAG
CGGTTCTCTTCGAAAGGACCCCAGCCCTCGAGACATAGACTGCAATGCAC
CCCAATGTACCCCAGGTCATAACTCACGGAGAAGTCTGGCAAGTGCAGCA
TGTTTTGGGCTAGATAATTAG
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protein sequence of Gvermi7611.t1

>Gvermi7611.t1 ID=Gvermi7611.t1|Name=Gvermi7611.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=307bp
MNCDFRGNDIGSAQMPGNDCSRACDLKSDCSHFAWTRYNGGTCWFKSGRS
VSQSSATPNSDPGAVCGILGSLLIANGQDSFGMTPHDPVADARPYLPVFR
YDDDADGWCFPDDKEARPSRDGVCNNRFKRDAPVYVHSKKCGQYTVYQFN
LWYGWQKGCFGDIGSHGNDNEYVQIWTLGPSGPVARVRYNQHNGYYFREP
GRGAEMRGSRAVIYIGKISHGAYHRGCKGRKFLQTFIPNSGTDYCVGGCG
YWDDFRNSEDSNFVMDSGSLRKDPSPRDIDCNAPQCTPGHNSRRSLASAA
CFGLDN*
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mRNA from alignment at ScGOVlb_64:409123..410043-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7611.t1 ID=Gvermi7611.t1|Name=Gvermi7611.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=921bp|location=Sequence derived from alignment at ScGOVlb_64:409123..410043- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTGCGATTTTCGAGGGAATGATATCGGCTCTGCCCAAATGCCCGG
GAACGACTGTTCCCGAGCTTGCGATCTAAAGAGCGACTGTTCCCATTTCG
CTTGGACCAGATACAATGGGGGAACATGCTGGTTCAAGTCCGGCCGCAGC
GTCTCTCAATCTTCAGCGACTCCGAACTCTGACCCTGGAGCAGTATGTGG
CATTCTCGGCAGTCTGCTAATCGCGAACGGGCAGGACTCATTTGGTATGA
CCCCTCATGATCCCGTGGCGGATGCAAGACCGTATTTACCAGTCTTTCGA
TATGACGACGATGCTGATGGATGGTGTTTTCCAGACGACAAGGAAGCTCG
TCCATCACGAGATGGGGTTTGCAACAACAGATTCAAACGCGATGCTCCGG
TTTATGTGCATTCCAAGAAATGTGGCCAGTACACCGTGTATCAGTTCAAC
CTGTGGTACGGCTGGCAGAAAGGATGCTTCGGTGACATTGGCAGCCATGG
AAATGACAACGAATATGTTCAAATCTGGACCCTGGGACCGTCGGGACCTG
TGGCGCGAGTCAGATATAATCAACATAATGGATACTACTTCAGAGAGCCG
GGAAGAGGTGCAGAGATGCGTGGAAGTCGTGCTGTGATCTACATCGGAAA
GATTTCCCATGGCGCATATCATCGTGGATGTAAAGGCCGTAAATTTTTGC
AAACATTCATTCCAAATAGTGGAACGGACTATTGTGTCGGTGGATGCGGT
TATTGGGATGATTTCAGAAATAGCGAGGATAGTAACTTTGTCATGGATAG
CGGTTCTCTTCGAAAGGACCCCAGCCCTCGAGACATAGACTGCAATGCAC
CCCAATGTACCCCAGGTCATAACTCACGGAGAAGTCTGGCAAGTGCAGCA
TGTTTTGGGCTAGATAATTAG
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Coding sequence (CDS) from alignment at ScGOVlb_64:409123..410043-

>Gvermi7611.t1 ID=Gvermi7611.t1|Name=Gvermi7611.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=921bp|location=Sequence derived from alignment at ScGOVlb_64:409123..410043- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTGCGATTTTCGAGGGAATGATATCGGCTCTGCCCAAATGCCCGG
GAACGACTGTTCCCGAGCTTGCGATCTAAAGAGCGACTGTTCCCATTTCG
CTTGGACCAGATACAATGGGGGAACATGCTGGTTCAAGTCCGGCCGCAGC
GTCTCTCAATCTTCAGCGACTCCGAACTCTGACCCTGGAGCAGTATGTGG
CATTCTCGGCAGTCTGCTAATCGCGAACGGGCAGGACTCATTTGGTATGA
CCCCTCATGATCCCGTGGCGGATGCAAGACCGTATTTACCAGTCTTTCGA
TATGACGACGATGCTGATGGATGGTGTTTTCCAGACGACAAGGAAGCTCG
TCCATCACGAGATGGGGTTTGCAACAACAGATTCAAACGCGATGCTCCGG
TTTATGTGCATTCCAAGAAATGTGGCCAGTACACCGTGTATCAGTTCAAC
CTGTGGTACGGCTGGCAGAAAGGATGCTTCGGTGACATTGGCAGCCATGG
AAATGACAACGAATATGTTCAAATCTGGACCCTGGGACCGTCGGGACCTG
TGGCGCGAGTCAGATATAATCAACATAATGGATACTACTTCAGAGAGCCG
GGAAGAGGTGCAGAGATGCGTGGAAGTCGTGCTGTGATCTACATCGGAAA
GATTTCCCATGGCGCATATCATCGTGGATGTAAAGGCCGTAAATTTTTGC
AAACATTCATTCCAAATAGTGGAACGGACTATTGTGTCGGTGGATGCGGT
TATTGGGATGATTTCAGAAATAGCGAGGATAGTAACTTTGTCATGGATAG
CGGTTCTCTTCGAAAGGACCCCAGCCCTCGAGACATAGACTGCAATGCAC
CCCAATGTACCCCAGGTCATAACTCACGGAGAAGTCTGGCAAGTGCAGCA
TGTTTTGGGCTAGATAATTAG
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