Gvermi7603.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7603.t1
Unique NameGvermi7603.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length149
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_8089contigScGOVlb_8089:107..553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002946012.1
PFAMsPeptidase_C1
Max annot lvl2759|Eukaryota
Evalue2.25e-12
EggNOG OGsCOG4870@1|root,2S8PN@2759|Eukaryota
DescriptionBelongs to the peptidase C1 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7603Gvermi7603Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_8089 107..553 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7603.t1.stop1Gvermi7603.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_8089 107..109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7603.t1.CDS1Gvermi7603.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_8089 107..553 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7603.t1.exon1Gvermi7603.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_8089 107..553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7603.t1Gvermi7603.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_8089 107..553 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7603.t1 ID=Gvermi7603.t1|Name=Gvermi7603.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=149bp
TLDQQFSSSLTVSETEEYSRLRSDYQSGFGVPFLRWLGINLNNRRVTRED
MQRSFEMRENYNTQSTIAQQILSNVQQQQLQISGELTAFGTSFIPTTVFA
FIRIARLQTQDGTTLTVVSQSGDNLVAADAGGNTVPSSGGDIDIIPLF*
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spliced messenger RNA

>Gvermi7603.t1 ID=Gvermi7603.t1|Name=Gvermi7603.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=447bp|location=Sequence derived from alignment at ScGOVlb_8089:107..553- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ACTCTCGACCAACAATTTTCTAGCTCTCTCACTGTTTCCGAGACGGAGGA
GTACAGTCGCCTCCGTTCAGACTACCAGAGCGGCTTTGGAGTCCCGTTTT
TGAGGTGGCTCGGGATCAACCTCAACAACCGCCGCGTTACTCGCGAGGAT
ATGCAGAGGTCCTTCGAGATGCGCGAGAATTACAACACGCAGTCCACCAT
TGCGCAGCAGATCCTGTCTAATGTGCAACAGCAGCAACTGCAGATTTCTG
GAGAGCTCACCGCTTTTGGCACTAGCTTCATCCCAACCACCGTCTTTGCT
TTCATTCGTATTGCACGCCTCCAAACTCAAGATGGTACGACGCTAACCGT
AGTATCACAGAGCGGCGACAACTTGGTGGCTGCTGACGCCGGTGGAAACA
CTGTTCCGTCTTCTGGCGGAGACATTGACATCATTCCTCTGTTCTAG
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protein sequence of Gvermi7603.t1

>Gvermi7603.t1 ID=Gvermi7603.t1|Name=Gvermi7603.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=149bp
TLDQQFSSSLTVSETEEYSRLRSDYQSGFGVPFLRWLGINLNNRRVTRED
MQRSFEMRENYNTQSTIAQQILSNVQQQQLQISGELTAFGTSFIPTTVFA
FIRIARLQTQDGTTLTVVSQSGDNLVAADAGGNTVPSSGGDIDIIPLF*
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mRNA from alignment at ScGOVlb_8089:107..553-

Legend: polypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7603.t1 ID=Gvermi7603.t1|Name=Gvermi7603.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=447bp|location=Sequence derived from alignment at ScGOVlb_8089:107..553- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ACTCTCGACCAACAATTTTCTAGCTCTCTCACTGTTTCCGAGACGGAGGA
GTACAGTCGCCTCCGTTCAGACTACCAGAGCGGCTTTGGAGTCCCGTTTT
TGAGGTGGCTCGGGATCAACCTCAACAACCGCCGCGTTACTCGCGAGGAT
ATGCAGAGGTCCTTCGAGATGCGCGAGAATTACAACACGCAGTCCACCAT
TGCGCAGCAGATCCTGTCTAATGTGCAACAGCAGCAACTGCAGATTTCTG
GAGAGCTCACCGCTTTTGGCACTAGCTTCATCCCAACCACCGTCTTTGCT
TTCATTCGTATTGCACGCCTCCAAACTCAAGATGGTACGACGCTAACCGT
AGTATCACAGAGCGGCGACAACTTGGTGGCTGCTGACGCCGGTGGAAACA
CTGTTCCGTCTTCTGGCGGAGACATTGACATCATTCCTCTGTTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_8089:107..553-

>Gvermi7603.t1 ID=Gvermi7603.t1|Name=Gvermi7603.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=447bp|location=Sequence derived from alignment at ScGOVlb_8089:107..553- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ACTCTCGACCAACAATTTTCTAGCTCTCTCACTGTTTCCGAGACGGAGGA
GTACAGTCGCCTCCGTTCAGACTACCAGAGCGGCTTTGGAGTCCCGTTTT
TGAGGTGGCTCGGGATCAACCTCAACAACCGCCGCGTTACTCGCGAGGAT
ATGCAGAGGTCCTTCGAGATGCGCGAGAATTACAACACGCAGTCCACCAT
TGCGCAGCAGATCCTGTCTAATGTGCAACAGCAGCAACTGCAGATTTCTG
GAGAGCTCACCGCTTTTGGCACTAGCTTCATCCCAACCACCGTCTTTGCT
TTCATTCGTATTGCACGCCTCCAAACTCAAGATGGTACGACGCTAACCGT
AGTATCACAGAGCGGCGACAACTTGGTGGCTGCTGACGCCGGTGGAAACA
CTGTTCCGTCTTCTGGCGGAGACATTGACATCATTCCTCTGTTCTAG
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