Gvermi742.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi742.t1
Unique NameGvermi742.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_6408contigScGOVlb_6408:2..404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog40492.XP_007311901.1
Max annot lvl40492.XP_007311901.1|-
Evalue7.36e-07
EggNOG OGs2D8Q2@1|root,2TB2I@2759|Eukaryota,3965I@33154|Opisthokonta,3Q16N@4751|Fungi
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi742Gvermi742Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_6408 2..404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi742.t1.CDS1Gvermi742.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_6408 2..404 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi742.t1.exon1Gvermi742.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_6408 2..404 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi742.t1.stop1Gvermi742.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_6408 402..404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi742.t1Gvermi742.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_6408 2..404 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi742.t1 ID=Gvermi742.t1|Name=Gvermi742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=135bp
XDDEAGVYTKLRGLWGRYIPNVVYAGPISLARNALAITYEGKSLDRLQDW
SQLGMSKDELKRKAEEAVEEVHKLGVLHGDVALRNIVVDPKRKSLRLIDF
GNATEVEPGLGSVAKKQEEMEKVSQLFDDGNDDA*
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spliced messenger RNA

>Gvermi742.t1 ID=Gvermi742.t1|Name=Gvermi742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=403bp|location=Sequence derived from alignment at ScGOVlb_6408:2..404+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CGACGACGAAGCCGGTGTTTACACTAAACTCCGTGGTTTGTGGGGTCGGT
ACATTCCGAACGTGGTTTACGCGGGCCCTATAAGTCTAGCTCGGAATGCA
CTTGCCATTACGTACGAGGGAAAGAGCCTTGATCGCTTGCAGGATTGGAG
CCAGCTCGGGATGAGCAAGGACGAGCTGAAACGAAAAGCGGAGGAGGCGG
TAGAAGAGGTCCACAAGCTAGGTGTTCTGCATGGTGACGTGGCTCTTCGC
AACATTGTCGTGGACCCCAAGAGAAAGTCACTCAGGCTTATCGACTTTGG
AAACGCGACTGAGGTAGAACCTGGACTGGGAAGCGTCGCGAAGAAGCAAG
AAGAGATGGAAAAGGTCTCGCAATTGTTTGACGATGGAAATGATGATGCT
TGA
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protein sequence of Gvermi742.t1

>Gvermi742.t1 ID=Gvermi742.t1|Name=Gvermi742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=135bp
XDDEAGVYTKLRGLWGRYIPNVVYAGPISLARNALAITYEGKSLDRLQDW
SQLGMSKDELKRKAEEAVEEVHKLGVLHGDVALRNIVVDPKRKSLRLIDF
GNATEVEPGLGSVAKKQEEMEKVSQLFDDGNDDA*
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mRNA from alignment at ScGOVlb_6408:2..404+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi742.t1 ID=Gvermi742.t1|Name=Gvermi742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=403bp|location=Sequence derived from alignment at ScGOVlb_6408:2..404+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CGACGACGAAGCCGGTGTTTACACTAAACTCCGTGGTTTGTGGGGTCGGT
ACATTCCGAACGTGGTTTACGCGGGCCCTATAAGTCTAGCTCGGAATGCA
CTTGCCATTACGTACGAGGGAAAGAGCCTTGATCGCTTGCAGGATTGGAG
CCAGCTCGGGATGAGCAAGGACGAGCTGAAACGAAAAGCGGAGGAGGCGG
TAGAAGAGGTCCACAAGCTAGGTGTTCTGCATGGTGACGTGGCTCTTCGC
AACATTGTCGTGGACCCCAAGAGAAAGTCACTCAGGCTTATCGACTTTGG
AAACGCGACTGAGGTAGAACCTGGACTGGGAAGCGTCGCGAAGAAGCAAG
AAGAGATGGAAAAGGTCTCGCAATTGTTTGACGATGGAAATGATGATGCT
TGA
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Coding sequence (CDS) from alignment at ScGOVlb_6408:2..404+

>Gvermi742.t1 ID=Gvermi742.t1|Name=Gvermi742.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=403bp|location=Sequence derived from alignment at ScGOVlb_6408:2..404+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CGACGACGAAGCCGGTGTTTACACTAAACTCCGTGGTTTGTGGGGTCGGT
ACATTCCGAACGTGGTTTACGCGGGCCCTATAAGTCTAGCTCGGAATGCA
CTTGCCATTACGTACGAGGGAAAGAGCCTTGATCGCTTGCAGGATTGGAG
CCAGCTCGGGATGAGCAAGGACGAGCTGAAACGAAAAGCGGAGGAGGCGG
TAGAAGAGGTCCACAAGCTAGGTGTTCTGCATGGTGACGTGGCTCTTCGC
AACATTGTCGTGGACCCCAAGAGAAAGTCACTCAGGCTTATCGACTTTGG
AAACGCGACTGAGGTAGAACCTGGACTGGGAAGCGTCGCGAAGAAGCAAG
AAGAGATGGAAAAGGTCTCGCAATTGTTTGACGATGGAAATGATGATGCT
TGA
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