Gvermi7325.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7325.t1
Unique NameGvermi7325.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length120
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_8602contigScGOVlb_8602:1..468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7325Gvermi7325Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_8602 1..468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7325.t1Gvermi7325.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_8602 1..468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7325.t1.CDS1Gvermi7325.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_8602 1..195 -
Gvermi7325.t1.CDS2Gvermi7325.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_8602 254..376 -
Gvermi7325.t1.CDS3Gvermi7325.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_8602 427..468 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7325.t1.exon1Gvermi7325.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_8602 1..195 -
Gvermi7325.t1.exon2Gvermi7325.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_8602 254..376 -
Gvermi7325.t1.exon3Gvermi7325.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_8602 427..468 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7325.t1.intron1Gvermi7325.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_8602 196..253 -
Gvermi7325.t1.intron2Gvermi7325.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_8602 377..426 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7325.t1.start1Gvermi7325.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_8602 466..468 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7325.t1 ID=Gvermi7325.t1|Name=Gvermi7325.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=120bp
LVVCSLGGRPLTSKMIEKHRKTAVVGPMYVVGEQVRRIARHIKWGSNPTW
SPTMQSCNPELLGFCTWSALTLTARDAKNGRCGFQCAAGPPSAGDVTVEN
EPVAPELPDSRGLRGDFAAL
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spliced messenger RNA

>Gvermi7325.t1 ID=Gvermi7325.t1|Name=Gvermi7325.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=360bp|location=Sequence derived from alignment at ScGOVlb_8602:1..468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGTTGTGTGCTCTCTTGGCGGGCGCCCGCTCACCTCAAAGATGATTGA
AAAGCACAGAAAGACTGCAGTTGTAGGGCCCATGTACGTGGTCGGAGAAC
AAGTTCGACGCATCGCCCGGCACATCAAGTGGGGCTCGAACCCCACATGG
TCACCTACAATGCAGAGTTGCAATCCGGAGCTGCTTGGGTTTTGCACCTG
GAGCGCCTTGACCCTCACCGCCCGCGATGCCAAGAATGGGCGTTGCGGTT
TCCAGTGTGCGGCCGGCCCTCCCAGCGCTGGTGACGTCACGGTCGAGAAT
GAGCCAGTAGCGCCGGAGCTCCCGGACAGTCGAGGGCTGCGAGGGGACTT
TGCCGCACTT
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protein sequence of Gvermi7325.t1

>Gvermi7325.t1 ID=Gvermi7325.t1|Name=Gvermi7325.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=120bp
LVVCSLGGRPLTSKMIEKHRKTAVVGPMYVVGEQVRRIARHIKWGSNPTW
SPTMQSCNPELLGFCTWSALTLTARDAKNGRCGFQCAAGPPSAGDVTVEN
EPVAPELPDSRGLRGDFAAL
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mRNA from alignment at ScGOVlb_8602:1..468-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7325.t1 ID=Gvermi7325.t1|Name=Gvermi7325.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=468bp|location=Sequence derived from alignment at ScGOVlb_8602:1..468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGTTGTGTGCTCTCTTGGCGGGCGCCCGCTCACCTCAAAGGTACGAGT
GACCACTCCGTCTCGCTCTTCTCACTGGCTGGCGCACCGCAGATGATTGA
AAAGCACAGAAAGACTGCAGTTGTAGGGCCCATGTACGTGGTCGGAGAAC
AAGTTCGACGCATCGCCCGGCACATCAAGTGGGGCTCGAACCCCACATGG
TCACCTACAATGCAGGTTGTGGATGTTGTGTGGTGGATTTTGGTTGTGTC
TTTTTCAAGTAATATTTACTCAGAGTTGCAATCCGGAGCTGCTTGGGTTT
TGCACCTGGAGCGCCTTGACCCTCACCGCCCGCGATGCCAAGAATGGGCG
TTGCGGTTTCCAGTGTGCGGCCGGCCCTCCCAGCGCTGGTGACGTCACGG
TCGAGAATGAGCCAGTAGCGCCGGAGCTCCCGGACAGTCGAGGGCTGCGA
GGGGACTTTGCCGCACTT
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Coding sequence (CDS) from alignment at ScGOVlb_8602:1..468-

>Gvermi7325.t1 ID=Gvermi7325.t1|Name=Gvermi7325.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=360bp|location=Sequence derived from alignment at ScGOVlb_8602:1..468- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGTTGTGTGCTCTCTTGGCGGGCGCCCGCTCACCTCAAAGATGATTGA
AAAGCACAGAAAGACTGCAGTTGTAGGGCCCATGTACGTGGTCGGAGAAC
AAGTTCGACGCATCGCCCGGCACATCAAGTGGGGCTCGAACCCCACATGG
TCACCTACAATGCAGAGTTGCAATCCGGAGCTGCTTGGGTTTTGCACCTG
GAGCGCCTTGACCCTCACCGCCCGCGATGCCAAGAATGGGCGTTGCGGTT
TCCAGTGTGCGGCCGGCCCTCCCAGCGCTGGTGACGTCACGGTCGAGAAT
GAGCCAGTAGCGCCGGAGCTCCCGGACAGTCGAGGGCTGCGAGGGGACTT
TGCCGCACTT
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