Gvermi7308.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7308.t1
Unique NameGvermi7308.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1538contigScGOVlb_1538:438..1781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0SB46
PFAMs7tm_3
Max annot lvl2836|Bacillariophyta
KEGG koko:K04615
KEGG TC9.A.14.15.1
KEGG Pathwayko04024,ko04080,ko04727,ko04742,ko04915,ko05032,map04024,map04080,map04727,map04742,map04915,map05032
Evalue6.42e-87
EggNOG OGsKOG1055@1|root,KOG1055@2759|Eukaryota,2XCAW@2836|Bacillariophyta
Description7 transmembrane sweet-taste receptor of 3 GCPR
COG categoryEPT
BRITEko00000,ko00001,ko04030
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7308Gvermi7308Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1538 438..1781 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7308.t1.stop1Gvermi7308.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1538 438..440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7308.t1.CDS1Gvermi7308.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1538 438..1781 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7308.t1.exon1Gvermi7308.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1538 438..1781 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7308.t1.start1Gvermi7308.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1538 1779..1781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7308.t1Gvermi7308.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1538 438..1781 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7308.t1 ID=Gvermi7308.t1|Name=Gvermi7308.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=448bp
LDLQSWLATHGKSLPDTTVKFMKSHLKGNTDPFSYLYLTMKVHKGISPTP
SRPIASASGSLLELEPLGLIINHLLQPIAQKQRSYFKNSLELKQQLLAKC
PLPANTYLATADAVSMYTNIPTDQAIPAIKQYLVGLDDPNLNIKAIISGL
KLVMTRNVVNFGDTTWLQTNGSAMGVSPAPPYATIYFGIHEDLVMQEFAD
YLELYKRYIDDVIYLWTNTGDTDSDTAAWQSFQQRMNDCPGLTWEFSPLS
SQVDFMDITIQLNLDGNIATTLYEKKLNLHLYIPPNSAHPPGVLHGLIFG
HIRRIFTLCSDSKDQEQRTREMLQHLVARGYSGDTLVPLFNKAIAKVTAQ
ATAPTTATTANTPAPFFFHLCYHPQDPPSSTIQQLWKTHVACPPYGMPLA
RVPTHTNHKLGADRLVVAYSRPHNLGNLLSYRKLDSKTGPPASSYMD*
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spliced messenger RNA

>Gvermi7308.t1 ID=Gvermi7308.t1|Name=Gvermi7308.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at ScGOVlb_1538:438..1781- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGACCTGCAGTCCTGGCTTGCCACCCATGGCAAGTCACTGCCTGACAC
CACTGTCAAGTTCATGAAGAGCCACCTGAAGGGCAACACTGACCCATTCA
GCTACCTCTACTTGACCATGAAGGTGCACAAGGGGATCAGCCCAACCCCA
AGCAGGCCCATTGCATCTGCCAGTGGCAGCCTGCTGGAACTGGAACCACT
GGGCCTGATCATCAACCACTTGCTACAGCCAATTGCCCAAAAGCAACGCT
CCTACTTCAAGAACTCCCTGGAGTTGAAGCAACAGCTGCTAGCCAAGTGC
CCCTTACCAGCCAACACCTACCTTGCAACAGCTGATGCTGTTTCAATGTA
CACCAACATCCCCACTGACCAGGCCATACCTGCCATCAAGCAGTACCTGG
TTGGTCTGGATGACCCCAATCTGAACATCAAAGCCATCATCTCTGGCCTC
AAGCTAGTGATGACCCGCAATGTTGTGAACTTTGGGGACACTACTTGGCT
CCAAACAAATGGCTCTGCTATGGGAGTGTCACCGGCACCCCCATATGCAA
CCATCTACTTTGGCATTCATGAGGACCTAGTCATGCAAGAATTTGCTGAC
TATCTGGAACTCTACAAGCGGTACATAGATGATGTCATCTACCTGTGGAC
CAACACAGGAGACACTGACTCTGACACTGCTGCCTGGCAGTCATTTCAAC
AGAGAATGAATGACTGCCCCGGCCTGACCTGGGAGTTCAGCCCACTTAGT
TCACAAGTGGATTTCATGGACATCACCATCCAGCTGAACTTGGATGGCAA
CATTGCCACCACTTTGTATGAGAAAAAGTTGAACCTACATCTCTACATTC
CTCCCAACTCGGCCCACCCACCGGGAGTCCTTCATGGACTCATCTTTGGA
CACATCAGGCGCATCTTTACCCTGTGCTCTGACTCCAAAGACCAAGAGCA
GAGAACTAGAGAAATGCTGCAACACCTTGTTGCCCGTGGCTACTCTGGTG
ACACCCTGGTTCCCCTTTTCAATAAGGCTATAGCCAAGGTGACTGCTCAG
GCAACTGCACCCACAACTGCAACCACTGCCAACACTCCTGCCCCATTCTT
CTTTCACCTCTGTTATCACCCACAAGACCCTCCTTCCTCTACCATTCAAC
AGCTCTGGAAGACCCATGTTGCCTGCCCACCCTATGGCATGCCCTTGGCC
AGAGTCCCCACCCACACTAACCACAAGTTGGGTGCTGACCGGCTTGTTGT
TGCTTACAGTCGGCCTCACAACCTTGGAAACCTTCTTTCATATAGGAAGC
TTGATTCAAAGACCGGCCCTCCAGCCTCGTCCTACATGGACTAG
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protein sequence of Gvermi7308.t1

>Gvermi7308.t1 ID=Gvermi7308.t1|Name=Gvermi7308.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=448bp
LDLQSWLATHGKSLPDTTVKFMKSHLKGNTDPFSYLYLTMKVHKGISPTP
SRPIASASGSLLELEPLGLIINHLLQPIAQKQRSYFKNSLELKQQLLAKC
PLPANTYLATADAVSMYTNIPTDQAIPAIKQYLVGLDDPNLNIKAIISGL
KLVMTRNVVNFGDTTWLQTNGSAMGVSPAPPYATIYFGIHEDLVMQEFAD
YLELYKRYIDDVIYLWTNTGDTDSDTAAWQSFQQRMNDCPGLTWEFSPLS
SQVDFMDITIQLNLDGNIATTLYEKKLNLHLYIPPNSAHPPGVLHGLIFG
HIRRIFTLCSDSKDQEQRTREMLQHLVARGYSGDTLVPLFNKAIAKVTAQ
ATAPTTATTANTPAPFFFHLCYHPQDPPSSTIQQLWKTHVACPPYGMPLA
RVPTHTNHKLGADRLVVAYSRPHNLGNLLSYRKLDSKTGPPASSYMD*
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mRNA from alignment at ScGOVlb_1538:438..1781-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7308.t1 ID=Gvermi7308.t1|Name=Gvermi7308.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at ScGOVlb_1538:438..1781- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGACCTGCAGTCCTGGCTTGCCACCCATGGCAAGTCACTGCCTGACAC
CACTGTCAAGTTCATGAAGAGCCACCTGAAGGGCAACACTGACCCATTCA
GCTACCTCTACTTGACCATGAAGGTGCACAAGGGGATCAGCCCAACCCCA
AGCAGGCCCATTGCATCTGCCAGTGGCAGCCTGCTGGAACTGGAACCACT
GGGCCTGATCATCAACCACTTGCTACAGCCAATTGCCCAAAAGCAACGCT
CCTACTTCAAGAACTCCCTGGAGTTGAAGCAACAGCTGCTAGCCAAGTGC
CCCTTACCAGCCAACACCTACCTTGCAACAGCTGATGCTGTTTCAATGTA
CACCAACATCCCCACTGACCAGGCCATACCTGCCATCAAGCAGTACCTGG
TTGGTCTGGATGACCCCAATCTGAACATCAAAGCCATCATCTCTGGCCTC
AAGCTAGTGATGACCCGCAATGTTGTGAACTTTGGGGACACTACTTGGCT
CCAAACAAATGGCTCTGCTATGGGAGTGTCACCGGCACCCCCATATGCAA
CCATCTACTTTGGCATTCATGAGGACCTAGTCATGCAAGAATTTGCTGAC
TATCTGGAACTCTACAAGCGGTACATAGATGATGTCATCTACCTGTGGAC
CAACACAGGAGACACTGACTCTGACACTGCTGCCTGGCAGTCATTTCAAC
AGAGAATGAATGACTGCCCCGGCCTGACCTGGGAGTTCAGCCCACTTAGT
TCACAAGTGGATTTCATGGACATCACCATCCAGCTGAACTTGGATGGCAA
CATTGCCACCACTTTGTATGAGAAAAAGTTGAACCTACATCTCTACATTC
CTCCCAACTCGGCCCACCCACCGGGAGTCCTTCATGGACTCATCTTTGGA
CACATCAGGCGCATCTTTACCCTGTGCTCTGACTCCAAAGACCAAGAGCA
GAGAACTAGAGAAATGCTGCAACACCTTGTTGCCCGTGGCTACTCTGGTG
ACACCCTGGTTCCCCTTTTCAATAAGGCTATAGCCAAGGTGACTGCTCAG
GCAACTGCACCCACAACTGCAACCACTGCCAACACTCCTGCCCCATTCTT
CTTTCACCTCTGTTATCACCCACAAGACCCTCCTTCCTCTACCATTCAAC
AGCTCTGGAAGACCCATGTTGCCTGCCCACCCTATGGCATGCCCTTGGCC
AGAGTCCCCACCCACACTAACCACAAGTTGGGTGCTGACCGGCTTGTTGT
TGCTTACAGTCGGCCTCACAACCTTGGAAACCTTCTTTCATATAGGAAGC
TTGATTCAAAGACCGGCCCTCCAGCCTCGTCCTACATGGACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_1538:438..1781-

>Gvermi7308.t1 ID=Gvermi7308.t1|Name=Gvermi7308.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1344bp|location=Sequence derived from alignment at ScGOVlb_1538:438..1781- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGACCTGCAGTCCTGGCTTGCCACCCATGGCAAGTCACTGCCTGACAC
CACTGTCAAGTTCATGAAGAGCCACCTGAAGGGCAACACTGACCCATTCA
GCTACCTCTACTTGACCATGAAGGTGCACAAGGGGATCAGCCCAACCCCA
AGCAGGCCCATTGCATCTGCCAGTGGCAGCCTGCTGGAACTGGAACCACT
GGGCCTGATCATCAACCACTTGCTACAGCCAATTGCCCAAAAGCAACGCT
CCTACTTCAAGAACTCCCTGGAGTTGAAGCAACAGCTGCTAGCCAAGTGC
CCCTTACCAGCCAACACCTACCTTGCAACAGCTGATGCTGTTTCAATGTA
CACCAACATCCCCACTGACCAGGCCATACCTGCCATCAAGCAGTACCTGG
TTGGTCTGGATGACCCCAATCTGAACATCAAAGCCATCATCTCTGGCCTC
AAGCTAGTGATGACCCGCAATGTTGTGAACTTTGGGGACACTACTTGGCT
CCAAACAAATGGCTCTGCTATGGGAGTGTCACCGGCACCCCCATATGCAA
CCATCTACTTTGGCATTCATGAGGACCTAGTCATGCAAGAATTTGCTGAC
TATCTGGAACTCTACAAGCGGTACATAGATGATGTCATCTACCTGTGGAC
CAACACAGGAGACACTGACTCTGACACTGCTGCCTGGCAGTCATTTCAAC
AGAGAATGAATGACTGCCCCGGCCTGACCTGGGAGTTCAGCCCACTTAGT
TCACAAGTGGATTTCATGGACATCACCATCCAGCTGAACTTGGATGGCAA
CATTGCCACCACTTTGTATGAGAAAAAGTTGAACCTACATCTCTACATTC
CTCCCAACTCGGCCCACCCACCGGGAGTCCTTCATGGACTCATCTTTGGA
CACATCAGGCGCATCTTTACCCTGTGCTCTGACTCCAAAGACCAAGAGCA
GAGAACTAGAGAAATGCTGCAACACCTTGTTGCCCGTGGCTACTCTGGTG
ACACCCTGGTTCCCCTTTTCAATAAGGCTATAGCCAAGGTGACTGCTCAG
GCAACTGCACCCACAACTGCAACCACTGCCAACACTCCTGCCCCATTCTT
CTTTCACCTCTGTTATCACCCACAAGACCCTCCTTCCTCTACCATTCAAC
AGCTCTGGAAGACCCATGTTGCCTGCCCACCCTATGGCATGCCCTTGGCC
AGAGTCCCCACCCACACTAACCACAAGTTGGGTGCTGACCGGCTTGTTGT
TGCTTACAGTCGGCCTCACAACCTTGGAAACCTTCTTTCATATAGGAAGC
TTGATTCAAAGACCGGCCCTCCAGCCTCGTCCTACATGGACTAG
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