Gvermi7106.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7106.t1
Unique NameGvermi7106.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2327contigScGOVlb_2327:2..722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1177154.Y5S_02549
PFAMsAcyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
Max annot lvl135619|Oceanospirillales
Evalue2.29e-112
EggNOG OGsCOG1960@1|root,COG1960@2|Bacteria,1MVJC@1224|Proteobacteria,1RPW2@1236|Gammaproteobacteria,1XNQT@135619|Oceanospirillales
Descriptionacyl-CoA dehydrogenase
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7106Gvermi7106Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2327 2..722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7106.t1.CDS1Gvermi7106.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2327 2..722 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7106.t1.exon1Gvermi7106.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2327 2..722 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7106.t1.stop1Gvermi7106.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2327 720..722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7106.t1Gvermi7106.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2327 2..722 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7106.t1 ID=Gvermi7106.t1|Name=Gvermi7106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=241bp
XDHYVVNGQKIWTTQAHWASYIFCLCRTNTEVPKQQGISFLLIDMKTPGL
EIRPIMTIDGHHHLNEIFLSDVRVPAENLVGKEGQGWTIAKFLLSHERTA
IAGVSDSLYQMDELRRAVASDASLADDPLVRRRLAALEVDLMALEYTNLR
TLDRVAKGQPPGPESSGLKIKGAEMQQAISEAQVELGGLSALPWMSDDAA
GHDVFRSATQRYNFLRASSIYGGTNEIQKNVLAKLLLGAG*
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spliced messenger RNA

>Gvermi7106.t1 ID=Gvermi7106.t1|Name=Gvermi7106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=721bp|location=Sequence derived from alignment at ScGOVlb_2327:2..722+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TGACCACTACGTGGTGAATGGCCAGAAAATCTGGACCACCCAGGCGCACT
GGGCAAGCTACATCTTCTGCCTGTGTCGCACCAACACCGAGGTGCCCAAG
CAGCAGGGCATTTCCTTCCTGCTCATCGACATGAAAACGCCGGGGCTCGA
AATCCGCCCGATCATGACCATCGATGGCCATCACCATCTCAACGAGATCT
TCCTGAGCGATGTTCGCGTGCCGGCCGAGAACCTGGTCGGCAAGGAGGGA
CAGGGCTGGACGATCGCCAAGTTCCTGCTCTCCCACGAGCGCACCGCCAT
CGCCGGCGTGTCCGACAGCCTCTACCAGATGGATGAGCTGCGCCGCGCCG
TCGCCAGCGATGCCTCGCTGGCCGATGACCCACTGGTGCGGCGTCGCCTG
GCGGCGCTGGAGGTGGACCTCATGGCCCTTGAATACACCAATCTGCGCAC
CCTGGACCGCGTCGCCAAGGGGCAGCCACCGGGTCCGGAATCGTCCGGTC
TCAAGATCAAGGGCGCCGAGATGCAGCAGGCCATTTCCGAGGCGCAGGTC
GAACTCGGAGGCCTCAGCGCACTGCCATGGATGAGCGACGACGCGGCCGG
CCACGACGTGTTTCGCAGCGCCACACAGCGTTACAACTTCCTGCGCGCCA
GCAGCATCTACGGCGGCACCAACGAAATCCAGAAAAACGTCCTCGCCAAG
CTGCTGCTGGGCGCGGGCTGA
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protein sequence of Gvermi7106.t1

>Gvermi7106.t1 ID=Gvermi7106.t1|Name=Gvermi7106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=241bp
XDHYVVNGQKIWTTQAHWASYIFCLCRTNTEVPKQQGISFLLIDMKTPGL
EIRPIMTIDGHHHLNEIFLSDVRVPAENLVGKEGQGWTIAKFLLSHERTA
IAGVSDSLYQMDELRRAVASDASLADDPLVRRRLAALEVDLMALEYTNLR
TLDRVAKGQPPGPESSGLKIKGAEMQQAISEAQVELGGLSALPWMSDDAA
GHDVFRSATQRYNFLRASSIYGGTNEIQKNVLAKLLLGAG*
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mRNA from alignment at ScGOVlb_2327:2..722+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7106.t1 ID=Gvermi7106.t1|Name=Gvermi7106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=721bp|location=Sequence derived from alignment at ScGOVlb_2327:2..722+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TGACCACTACGTGGTGAATGGCCAGAAAATCTGGACCACCCAGGCGCACT
GGGCAAGCTACATCTTCTGCCTGTGTCGCACCAACACCGAGGTGCCCAAG
CAGCAGGGCATTTCCTTCCTGCTCATCGACATGAAAACGCCGGGGCTCGA
AATCCGCCCGATCATGACCATCGATGGCCATCACCATCTCAACGAGATCT
TCCTGAGCGATGTTCGCGTGCCGGCCGAGAACCTGGTCGGCAAGGAGGGA
CAGGGCTGGACGATCGCCAAGTTCCTGCTCTCCCACGAGCGCACCGCCAT
CGCCGGCGTGTCCGACAGCCTCTACCAGATGGATGAGCTGCGCCGCGCCG
TCGCCAGCGATGCCTCGCTGGCCGATGACCCACTGGTGCGGCGTCGCCTG
GCGGCGCTGGAGGTGGACCTCATGGCCCTTGAATACACCAATCTGCGCAC
CCTGGACCGCGTCGCCAAGGGGCAGCCACCGGGTCCGGAATCGTCCGGTC
TCAAGATCAAGGGCGCCGAGATGCAGCAGGCCATTTCCGAGGCGCAGGTC
GAACTCGGAGGCCTCAGCGCACTGCCATGGATGAGCGACGACGCGGCCGG
CCACGACGTGTTTCGCAGCGCCACACAGCGTTACAACTTCCTGCGCGCCA
GCAGCATCTACGGCGGCACCAACGAAATCCAGAAAAACGTCCTCGCCAAG
CTGCTGCTGGGCGCGGGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2327:2..722+

>Gvermi7106.t1 ID=Gvermi7106.t1|Name=Gvermi7106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=721bp|location=Sequence derived from alignment at ScGOVlb_2327:2..722+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TGACCACTACGTGGTGAATGGCCAGAAAATCTGGACCACCCAGGCGCACT
GGGCAAGCTACATCTTCTGCCTGTGTCGCACCAACACCGAGGTGCCCAAG
CAGCAGGGCATTTCCTTCCTGCTCATCGACATGAAAACGCCGGGGCTCGA
AATCCGCCCGATCATGACCATCGATGGCCATCACCATCTCAACGAGATCT
TCCTGAGCGATGTTCGCGTGCCGGCCGAGAACCTGGTCGGCAAGGAGGGA
CAGGGCTGGACGATCGCCAAGTTCCTGCTCTCCCACGAGCGCACCGCCAT
CGCCGGCGTGTCCGACAGCCTCTACCAGATGGATGAGCTGCGCCGCGCCG
TCGCCAGCGATGCCTCGCTGGCCGATGACCCACTGGTGCGGCGTCGCCTG
GCGGCGCTGGAGGTGGACCTCATGGCCCTTGAATACACCAATCTGCGCAC
CCTGGACCGCGTCGCCAAGGGGCAGCCACCGGGTCCGGAATCGTCCGGTC
TCAAGATCAAGGGCGCCGAGATGCAGCAGGCCATTTCCGAGGCGCAGGTC
GAACTCGGAGGCCTCAGCGCACTGCCATGGATGAGCGACGACGCGGCCGG
CCACGACGTGTTTCGCAGCGCCACACAGCGTTACAACTTCCTGCGCGCCA
GCAGCATCTACGGCGGCACCAACGAAATCCAGAAAAACGTCCTCGCCAAG
CTGCTGCTGGGCGCGGGCTGA
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