Gvermi7102.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7102.t1
Unique NameGvermi7102.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1667570..1668409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7102Gvermi7102Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1667570..1668409 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7102.t1.start1Gvermi7102.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1667570..1667572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7102.t1.CDS1Gvermi7102.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1667570..1668409 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7102.t1.exon1Gvermi7102.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1667570..1668409 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7102.t1.stop1Gvermi7102.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1668407..1668409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7102.t1Gvermi7102.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1667570..1668409 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7102.t1 ID=Gvermi7102.t1|Name=Gvermi7102.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=280bp
LPLRWSFFAVVTGLHRAAQDCTAEWSQPRHDNPPVSQSLPEGLESLHDAG
TTVGRDSLVASPPLEVARHRALTPTTLRAQDKPFAGKVRNESLSTSSIEE
DAATFAPTVKNGKEYPKITEPDPGLPQARGWTQSAGMDADTASRMTPREM
GEELVENGDSSAKNSPNLEKPGKPETTGNHEAQRQQGTEQPLADTLEREG
HRSNANRFPLPEFRARVREEQWQVPPPATRNTNPIGKRATGPPQREDPRR
RVVRADYHEKGTSSPRRVSGDTATSHAES*
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spliced messenger RNA

>Gvermi7102.t1 ID=Gvermi7102.t1|Name=Gvermi7102.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=840bp|location=Sequence derived from alignment at ScGOVlb_24229:1667570..1668409+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCGCTCCGTTGGAGCTTCTTTGCCGTCGTCACCGGATTGCACCGCGC
AGCACAGGATTGCACCGCAGAGTGGTCCCAGCCACGGCACGACAACCCAC
CTGTTTCACAAAGCCTTCCGGAGGGTTTAGAATCGCTGCATGACGCGGGA
ACCACCGTTGGAAGGGATTCACTTGTGGCATCACCACCACTAGAAGTGGC
ACGCCACCGGGCACTTACGCCCACCACGTTGCGTGCCCAAGATAAGCCTT
TTGCGGGAAAGGTTCGAAATGAATCGCTTTCAACGTCTTCTATCGAGGAG
GATGCTGCAACATTCGCACCCACCGTGAAGAACGGGAAAGAATACCCCAA
GATTACGGAACCGGATCCAGGCTTGCCGCAGGCGCGCGGTTGGACCCAGA
GTGCTGGGATGGATGCTGACACAGCTTCCCGTATGACCCCGAGGGAAATG
GGCGAAGAACTCGTGGAAAACGGTGATTCCAGCGCGAAAAATTCGCCTAA
TTTGGAGAAACCTGGAAAACCGGAAACCACCGGCAACCACGAAGCGCAAC
GCCAGCAAGGCACGGAGCAGCCGTTGGCGGACACCCTAGAAAGGGAGGGG
CATCGGAGCAACGCTAACCGCTTTCCATTGCCGGAGTTCCGTGCCCGCGT
GCGGGAGGAACAATGGCAGGTGCCACCACCCGCCACGCGCAATACCAATC
CCATAGGGAAGAGAGCAACTGGACCACCGCAACGGGAAGACCCACGCAGA
CGTGTAGTACGGGCAGACTACCACGAGAAGGGGACATCATCACCCCGTAG
GGTCAGCGGCGACACGGCGACATCCCACGCAGAATCCTAA
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protein sequence of Gvermi7102.t1

>Gvermi7102.t1 ID=Gvermi7102.t1|Name=Gvermi7102.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=280bp
LPLRWSFFAVVTGLHRAAQDCTAEWSQPRHDNPPVSQSLPEGLESLHDAG
TTVGRDSLVASPPLEVARHRALTPTTLRAQDKPFAGKVRNESLSTSSIEE
DAATFAPTVKNGKEYPKITEPDPGLPQARGWTQSAGMDADTASRMTPREM
GEELVENGDSSAKNSPNLEKPGKPETTGNHEAQRQQGTEQPLADTLEREG
HRSNANRFPLPEFRARVREEQWQVPPPATRNTNPIGKRATGPPQREDPRR
RVVRADYHEKGTSSPRRVSGDTATSHAES*
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mRNA from alignment at ScGOVlb_24229:1667570..1668409+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7102.t1 ID=Gvermi7102.t1|Name=Gvermi7102.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=840bp|location=Sequence derived from alignment at ScGOVlb_24229:1667570..1668409+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCGCTCCGTTGGAGCTTCTTTGCCGTCGTCACCGGATTGCACCGCGC
AGCACAGGATTGCACCGCAGAGTGGTCCCAGCCACGGCACGACAACCCAC
CTGTTTCACAAAGCCTTCCGGAGGGTTTAGAATCGCTGCATGACGCGGGA
ACCACCGTTGGAAGGGATTCACTTGTGGCATCACCACCACTAGAAGTGGC
ACGCCACCGGGCACTTACGCCCACCACGTTGCGTGCCCAAGATAAGCCTT
TTGCGGGAAAGGTTCGAAATGAATCGCTTTCAACGTCTTCTATCGAGGAG
GATGCTGCAACATTCGCACCCACCGTGAAGAACGGGAAAGAATACCCCAA
GATTACGGAACCGGATCCAGGCTTGCCGCAGGCGCGCGGTTGGACCCAGA
GTGCTGGGATGGATGCTGACACAGCTTCCCGTATGACCCCGAGGGAAATG
GGCGAAGAACTCGTGGAAAACGGTGATTCCAGCGCGAAAAATTCGCCTAA
TTTGGAGAAACCTGGAAAACCGGAAACCACCGGCAACCACGAAGCGCAAC
GCCAGCAAGGCACGGAGCAGCCGTTGGCGGACACCCTAGAAAGGGAGGGG
CATCGGAGCAACGCTAACCGCTTTCCATTGCCGGAGTTCCGTGCCCGCGT
GCGGGAGGAACAATGGCAGGTGCCACCACCCGCCACGCGCAATACCAATC
CCATAGGGAAGAGAGCAACTGGACCACCGCAACGGGAAGACCCACGCAGA
CGTGTAGTACGGGCAGACTACCACGAGAAGGGGACATCATCACCCCGTAG
GGTCAGCGGCGACACGGCGACATCCCACGCAGAATCCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1667570..1668409+

>Gvermi7102.t1 ID=Gvermi7102.t1|Name=Gvermi7102.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=840bp|location=Sequence derived from alignment at ScGOVlb_24229:1667570..1668409+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCGCTCCGTTGGAGCTTCTTTGCCGTCGTCACCGGATTGCACCGCGC
AGCACAGGATTGCACCGCAGAGTGGTCCCAGCCACGGCACGACAACCCAC
CTGTTTCACAAAGCCTTCCGGAGGGTTTAGAATCGCTGCATGACGCGGGA
ACCACCGTTGGAAGGGATTCACTTGTGGCATCACCACCACTAGAAGTGGC
ACGCCACCGGGCACTTACGCCCACCACGTTGCGTGCCCAAGATAAGCCTT
TTGCGGGAAAGGTTCGAAATGAATCGCTTTCAACGTCTTCTATCGAGGAG
GATGCTGCAACATTCGCACCCACCGTGAAGAACGGGAAAGAATACCCCAA
GATTACGGAACCGGATCCAGGCTTGCCGCAGGCGCGCGGTTGGACCCAGA
GTGCTGGGATGGATGCTGACACAGCTTCCCGTATGACCCCGAGGGAAATG
GGCGAAGAACTCGTGGAAAACGGTGATTCCAGCGCGAAAAATTCGCCTAA
TTTGGAGAAACCTGGAAAACCGGAAACCACCGGCAACCACGAAGCGCAAC
GCCAGCAAGGCACGGAGCAGCCGTTGGCGGACACCCTAGAAAGGGAGGGG
CATCGGAGCAACGCTAACCGCTTTCCATTGCCGGAGTTCCGTGCCCGCGT
GCGGGAGGAACAATGGCAGGTGCCACCACCCGCCACGCGCAATACCAATC
CCATAGGGAAGAGAGCAACTGGACCACCGCAACGGGAAGACCCACGCAGA
CGTGTAGTACGGGCAGACTACCACGAGAAGGGGACATCATCACCCCGTAG
GGTCAGCGGCGACACGGCGACATCCCACGCAGAATCCTAA
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