Gvermi7100.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7100.t1
Unique NameGvermi7100.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1640673..1641125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog247634.GPB2148_1933
PFAMsPolyketide_cyc2,adh_short
Max annot lvl1236|Gammaproteobacteria
Evalue5.12e-09
EggNOG OGsCOG1028@1|root,COG3427@1|root,COG1028@2|Bacteria,COG3427@2|Bacteria,1P9R4@1224|Proteobacteria,1RYF6@1236|Gammaproteobacteria
DescriptionBelongs to the short-chain dehydrogenases reductases (SDR) family
COG categoryIQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7100Gvermi7100Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1640673..1641125 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7100.t1.stop1Gvermi7100.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1640673..1640675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7100.t1.CDS1Gvermi7100.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1640673..1641125 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7100.t1.exon1Gvermi7100.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1640673..1641125 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7100.t1.start1Gvermi7100.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1641123..1641125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7100.t1Gvermi7100.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1640673..1641125 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7100.t1 ID=Gvermi7100.t1|Name=Gvermi7100.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=151bp
MVKYRASVVVPFARDRVWKLMSDWTNLAKWDVNITKSQLAASEPADARGE
GTKYTCAFSLNGGNVPVDYTCVKYDEPNMCQFVGLARLFRSQDTLEFDSK
DGGTEISAEFDLSFRGLLSPFSFVMNGAMQKTGPVVMDDIKKFVTEQLDS
*
back to top

spliced messenger RNA

>Gvermi7100.t1 ID=Gvermi7100.t1|Name=Gvermi7100.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=453bp|location=Sequence derived from alignment at ScGOVlb_24229:1640673..1641125- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTAAATACCGCGCCTCGGTCGTTGTACCTTTCGCTCGCGATCGCGT
ATGGAAGCTCATGTCAGACTGGACAAACCTAGCTAAGTGGGACGTAAACA
TCACCAAATCCCAGCTTGCGGCGTCGGAACCAGCAGACGCCCGTGGAGAG
GGTACTAAGTATACTTGCGCCTTCAGCTTGAACGGCGGAAACGTTCCCGT
CGACTACACCTGTGTCAAGTACGACGAACCGAACATGTGTCAATTTGTCG
GACTTGCCCGTCTGTTCAGATCGCAAGACACTCTGGAATTCGACTCCAAA
GATGGCGGAACGGAAATTTCGGCCGAATTCGACTTGAGCTTCAGAGGACT
GCTATCCCCATTCTCGTTCGTCATGAATGGCGCCATGCAAAAGACCGGAC
CAGTTGTCATGGATGACATTAAGAAGTTTGTCACGGAGCAGCTCGATAGT
TGA
back to top

protein sequence of Gvermi7100.t1

>Gvermi7100.t1 ID=Gvermi7100.t1|Name=Gvermi7100.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=151bp
MVKYRASVVVPFARDRVWKLMSDWTNLAKWDVNITKSQLAASEPADARGE
GTKYTCAFSLNGGNVPVDYTCVKYDEPNMCQFVGLARLFRSQDTLEFDSK
DGGTEISAEFDLSFRGLLSPFSFVMNGAMQKTGPVVMDDIKKFVTEQLDS
*
back to top

mRNA from alignment at ScGOVlb_24229:1640673..1641125-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7100.t1 ID=Gvermi7100.t1|Name=Gvermi7100.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=453bp|location=Sequence derived from alignment at ScGOVlb_24229:1640673..1641125- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTAAATACCGCGCCTCGGTCGTTGTACCTTTCGCTCGCGATCGCGT
ATGGAAGCTCATGTCAGACTGGACAAACCTAGCTAAGTGGGACGTAAACA
TCACCAAATCCCAGCTTGCGGCGTCGGAACCAGCAGACGCCCGTGGAGAG
GGTACTAAGTATACTTGCGCCTTCAGCTTGAACGGCGGAAACGTTCCCGT
CGACTACACCTGTGTCAAGTACGACGAACCGAACATGTGTCAATTTGTCG
GACTTGCCCGTCTGTTCAGATCGCAAGACACTCTGGAATTCGACTCCAAA
GATGGCGGAACGGAAATTTCGGCCGAATTCGACTTGAGCTTCAGAGGACT
GCTATCCCCATTCTCGTTCGTCATGAATGGCGCCATGCAAAAGACCGGAC
CAGTTGTCATGGATGACATTAAGAAGTTTGTCACGGAGCAGCTCGATAGT
TGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24229:1640673..1641125-

>Gvermi7100.t1 ID=Gvermi7100.t1|Name=Gvermi7100.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=453bp|location=Sequence derived from alignment at ScGOVlb_24229:1640673..1641125- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTAAATACCGCGCCTCGGTCGTTGTACCTTTCGCTCGCGATCGCGT
ATGGAAGCTCATGTCAGACTGGACAAACCTAGCTAAGTGGGACGTAAACA
TCACCAAATCCCAGCTTGCGGCGTCGGAACCAGCAGACGCCCGTGGAGAG
GGTACTAAGTATACTTGCGCCTTCAGCTTGAACGGCGGAAACGTTCCCGT
CGACTACACCTGTGTCAAGTACGACGAACCGAACATGTGTCAATTTGTCG
GACTTGCCCGTCTGTTCAGATCGCAAGACACTCTGGAATTCGACTCCAAA
GATGGCGGAACGGAAATTTCGGCCGAATTCGACTTGAGCTTCAGAGGACT
GCTATCCCCATTCTCGTTCGTCATGAATGGCGCCATGCAAAAGACCGGAC
CAGTTGTCATGGATGACATTAAGAAGTTTGTCACGGAGCAGCTCGATAGT
TGA
back to top