Gvermi7095.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7095.t1
Unique Name	Gvermi7095.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	148

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:1632882..1633325 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_56650
Preferred name	ISA2
PFAMs	Fe-S_biosyn
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15199,ko:K22063,ko:K22072
GOs	GO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0010467,GO:0016043,GO:0016053,GO:0016226,GO:0017144,GO:0018130,GO:0019538,GO:0019752,GO:0022607,GO:0031163,GO:0031974,GO:0032787,GO:0034641,GO:0042364,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044572,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051188,GO:0051536,GO:0051537,GO:0051539,GO:0051540,GO:0051604,GO:0070013,GO:0071704,GO:0071840,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	5.6e-29
EggNOG OGs	COG0316@1\|root,KOG1119@2759\|Eukaryota
Description	protein maturation by iron-sulfur cluster transfer
COG category	U
BRITE	ko00000,ko03021,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7095	Gvermi7095	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 1632882..1633325 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7095.t1.start1	Gvermi7095.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 1632882..1632884 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7095.t1.CDS1	Gvermi7095.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 1632882..1633325 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7095.t1.exon1	Gvermi7095.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 1632882..1633325 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7095.t1.stop1	Gvermi7095.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 1633323..1633325 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7095.t1	Gvermi7095.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 1632882..1633325 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:1632882..1633325+
coding sequence from alignment at ScGOVlb_24229:1632882..1633325+

mRNA sequence

>Gvermi7095.t1 ID=Gvermi7095.t1|Name=Gvermi7095.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=148bp
MFRPALNTAVVSRTCQTLRRAFTTPVADAKLQITPRCVQRIKQLQQQRNA
LLVLRVQVDGGGCSGFQYGFELEAWDQKPDASSLKHKQDKLIEQDGVCVI
VDDVSLAFVSGAKVDYVQEMISSSFRITDNPNSDTSCGCGVSFSPKM*

spliced messenger RNA

>Gvermi7095.t1 ID=Gvermi7095.t1|Name=Gvermi7095.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=444bp|location=Sequence derived from alignment at ScGOVlb_24229:1632882..1633325+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCGCCCGGCTCTGAACACGGCCGTCGTCTCCCGCACGTGCCAGAC
GCTCCGCAGGGCTTTCACAACCCCCGTTGCGGACGCCAAGCTTCAAATCA
CTCCGCGATGCGTGCAAAGAATCAAACAACTGCAGCAGCAGCGCAACGCA
CTTCTGGTGCTCCGCGTGCAGGTTGACGGGGGGGGCTGCTCTGGGTTTCA
GTATGGCTTCGAACTCGAAGCGTGGGATCAAAAGCCGGACGCCTCCTCGC
TGAAACACAAACAGGATAAATTGATTGAGCAGGACGGCGTTTGCGTGATT
GTGGATGATGTTTCTCTGGCATTTGTGTCGGGCGCAAAGGTGGACTACGT
TCAAGAGATGATCAGCTCTTCATTTCGAATCACCGACAATCCGAATTCGG
ACACCTCGTGCGGCTGCGGGGTATCGTTCTCACCAAAGATGTAA

protein sequence of Gvermi7095.t1

>Gvermi7095.t1 ID=Gvermi7095.t1|Name=Gvermi7095.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=148bp
MFRPALNTAVVSRTCQTLRRAFTTPVADAKLQITPRCVQRIKQLQQQRNA
LLVLRVQVDGGGCSGFQYGFELEAWDQKPDASSLKHKQDKLIEQDGVCVI
VDDVSLAFVSGAKVDYVQEMISSSFRITDNPNSDTSCGCGVSFSPKM*

mRNA from alignment at ScGOVlb_24229:1632882..1633325+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7095.t1 ID=Gvermi7095.t1|Name=Gvermi7095.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=444bp|location=Sequence derived from alignment at ScGOVlb_24229:1632882..1633325+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTCGCCCGGCTCTGAACACGGCCGTCGTCTCCCGCACGTGCCAGAC
GCTCCGCAGGGCTTTCACAACCCCCGTTGCGGACGCCAAGCTTCAAATCA
CTCCGCGATGCGTGCAAAGAATCAAACAACTGCAGCAGCAGCGCAACGCA
CTTCTGGTGCTCCGCGTGCAGGTTGACGGGGGGGGCTGCTCTGGGTTTCA
GTATGGCTTCGAACTCGAAGCGTGGGATCAAAAGCCGGACGCCTCCTCGC
TGAAACACAAACAGGATAAATTGATTGAGCAGGACGGCGTTTGCGTGATT
GTGGATGATGTTTCTCTGGCATTTGTGTCGGGCGCAAAGGTGGACTACGT
TCAAGAGATGATCAGCTCTTCATTTCGAATCACCGACAATCCGAATTCGG
ACACCTCGTGCGGCTGCGGGGTATCGTTCTCACCAAAGATGTAA

Coding sequence (CDS) from alignment at ScGOVlb_24229:1632882..1633325+

>Gvermi7095.t1 ID=Gvermi7095.t1|Name=Gvermi7095.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=444bp|location=Sequence derived from alignment at ScGOVlb_24229:1632882..1633325+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTCGCCCGGCTCTGAACACGGCCGTCGTCTCCCGCACGTGCCAGAC
GCTCCGCAGGGCTTTCACAACCCCCGTTGCGGACGCCAAGCTTCAAATCA
CTCCGCGATGCGTGCAAAGAATCAAACAACTGCAGCAGCAGCGCAACGCA
CTTCTGGTGCTCCGCGTGCAGGTTGACGGGGGGGGCTGCTCTGGGTTTCA
GTATGGCTTCGAACTCGAAGCGTGGGATCAAAAGCCGGACGCCTCCTCGC
TGAAACACAAACAGGATAAATTGATTGAGCAGGACGGCGTTTGCGTGATT
GTGGATGATGTTTCTCTGGCATTTGTGTCGGGCGCAAAGGTGGACTACGT
TCAAGAGATGATCAGCTCTTCATTTCGAATCACCGACAATCCGAATTCGG
ACACCTCGTGCGGCTGCGGGGTATCGTTCTCACCAAAGATGTAA