Gvermi7094.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7094.t1
Unique NameGvermi7094.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1632024..1632636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010267327.1
PFAMszf-RING_2
Max annot lvl35493|Streptophyta
Evalue1.93e-12
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37UI4@33090|Viridiplantae,3GJ3X@35493|Streptophyta
DescriptionRING-H2 finger protein
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7094Gvermi7094Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1632024..1632636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7094.t1Gvermi7094.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1632024..1632636 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7094.t1.stop1Gvermi7094.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1632024..1632026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7094.t1.CDS1Gvermi7094.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1632024..1632096 -
Gvermi7094.t1.CDS2Gvermi7094.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1632191..1632636 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7094.t1.exon1Gvermi7094.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1632024..1632096 -
Gvermi7094.t1.exon2Gvermi7094.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1632191..1632636 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7094.t1.intron1Gvermi7094.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 1632097..1632190 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7094.t1.start1Gvermi7094.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1632634..1632636 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7094.t1 ID=Gvermi7094.t1|Name=Gvermi7094.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=173bp
MFRTAADIALTCLLPVAMFALAHISLLMCAVCILCCHVAFKTVQLIQRVA
LVFCANQAMDSLQHVLQSVISGLHWMRTLLSLICSAVGEFCMMDEHGMVV
EEFCPVVGDTAGNGGGHVRTQNKCTICLDMVNCGEKVRYLKNCSHSFHAK
CIEKWICYANRCPLCCTPVVAH*
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spliced messenger RNA

>Gvermi7094.t1 ID=Gvermi7094.t1|Name=Gvermi7094.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=519bp|location=Sequence derived from alignment at ScGOVlb_24229:1632024..1632636- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGCACCGCGGCAGACATCGCTCTGACATGCCTGCTGCCGGTGGC
CATGTTTGCGCTGGCCCACATCTCCCTGTTGATGTGCGCGGTGTGTATTC
TGTGCTGTCATGTGGCGTTCAAGACGGTACAACTTATTCAGCGCGTGGCA
CTTGTGTTCTGCGCAAATCAGGCGATGGACTCTTTGCAGCACGTACTACA
ATCAGTTATTTCGGGTTTACATTGGATGCGCACGCTGCTGTCGTTGATTT
GCTCGGCGGTGGGTGAGTTTTGCATGATGGACGAGCACGGGATGGTTGTA
GAGGAGTTTTGTCCGGTGGTGGGCGACACAGCAGGCAACGGCGGCGGCCA
TGTCCGGACTCAAAACAAGTGCACAATCTGTCTAGACATGGTGAATTGCG
GAGAGAAAGTGCGGTACCTCAAAAACTGCTCACATTCGTTTCACGCCAAG
TGTATCGAAAAATGGATTTGCTACGCAAATCGATGTCCATTATGCTGCAC
GCCCGTGGTAGCGCACTGA
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protein sequence of Gvermi7094.t1

>Gvermi7094.t1 ID=Gvermi7094.t1|Name=Gvermi7094.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=173bp
MFRTAADIALTCLLPVAMFALAHISLLMCAVCILCCHVAFKTVQLIQRVA
LVFCANQAMDSLQHVLQSVISGLHWMRTLLSLICSAVGEFCMMDEHGMVV
EEFCPVVGDTAGNGGGHVRTQNKCTICLDMVNCGEKVRYLKNCSHSFHAK
CIEKWICYANRCPLCCTPVVAH*
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mRNA from alignment at ScGOVlb_24229:1632024..1632636-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7094.t1 ID=Gvermi7094.t1|Name=Gvermi7094.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=613bp|location=Sequence derived from alignment at ScGOVlb_24229:1632024..1632636- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCGCACCGCGGCAGACATCGCTCTGACATGCCTGCTGCCGGTGGC
CATGTTTGCGCTGGCCCACATCTCCCTGTTGATGTGCGCGGTGTGTATTC
TGTGCTGTCATGTGGCGTTCAAGACGGTACAACTTATTCAGCGCGTGGCA
CTTGTGTTCTGCGCAAATCAGGCGATGGACTCTTTGCAGCACGTACTACA
ATCAGTTATTTCGGGTTTACATTGGATGCGCACGCTGCTGTCGTTGATTT
GCTCGGCGGTGGGTGAGTTTTGCATGATGGACGAGCACGGGATGGTTGTA
GAGGAGTTTTGTCCGGTGGTGGGCGACACAGCAGGCAACGGCGGCGGCCA
TGTCCGGACTCAAAACAAGTGCACAATCTGTCTAGACATGGTGAATTGCG
GAGAGAAAGTGCGGTACCTCAAAAACTGCTCACATTCGTTTCACGCGTAA
GTTGATGCATCCTTGTCCAGCGGAATACGAACGCAGGGCGACACAAGCAG
TAATAATAACAGGTGTGTTGAACGTTGGTGCCGCGGGTAGCAAGTGTATC
GAAAAATGGATTTGCTACGCAAATCGATGTCCATTATGCTGCACGCCCGT
GGTAGCGCACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1632024..1632636-

>Gvermi7094.t1 ID=Gvermi7094.t1|Name=Gvermi7094.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=519bp|location=Sequence derived from alignment at ScGOVlb_24229:1632024..1632636- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCGCACCGCGGCAGACATCGCTCTGACATGCCTGCTGCCGGTGGC
CATGTTTGCGCTGGCCCACATCTCCCTGTTGATGTGCGCGGTGTGTATTC
TGTGCTGTCATGTGGCGTTCAAGACGGTACAACTTATTCAGCGCGTGGCA
CTTGTGTTCTGCGCAAATCAGGCGATGGACTCTTTGCAGCACGTACTACA
ATCAGTTATTTCGGGTTTACATTGGATGCGCACGCTGCTGTCGTTGATTT
GCTCGGCGGTGGGTGAGTTTTGCATGATGGACGAGCACGGGATGGTTGTA
GAGGAGTTTTGTCCGGTGGTGGGCGACACAGCAGGCAACGGCGGCGGCCA
TGTCCGGACTCAAAACAAGTGCACAATCTGTCTAGACATGGTGAATTGCG
GAGAGAAAGTGCGGTACCTCAAAAACTGCTCACATTCGTTTCACGCCAAG
TGTATCGAAAAATGGATTTGCTACGCAAATCGATGTCCATTATGCTGCAC
GCCCGTGGTAGCGCACTGA
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