Gvermi7086.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7086.t1
Unique NameGvermi7086.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length319
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1564352..1565308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1303518.CCALI_00765
PFAMsPeripla_BP_2
Max annot lvl2|Bacteria
KEGG koko:K02016
KEGG TC3.A.1.14
KEGG Pathwayko02010,map02010
KEGG ModuleM00240
Evalue3.85e-75
EggNOG OGsCOG0614@1|root,COG0614@2|Bacteria
Descriptionabc-type fe3 -hydroxamate transport system, periplasmic component
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7086Gvermi7086Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 1564352..1565308 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7086.t1.stop1Gvermi7086.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 1564352..1564354 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7086.t1.CDS1Gvermi7086.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 1564352..1565308 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7086.t1.exon1Gvermi7086.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 1564352..1565308 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7086.t1.start1Gvermi7086.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 1565306..1565308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7086.t1Gvermi7086.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 1564352..1565308 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7086.t1 ID=Gvermi7086.t1|Name=Gvermi7086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=319bp
MGKSNQSPRIVSLLPSATEILFAIGAGPNVVGVTHECDFPPEATRLPHCT
ANLLPPNLSAKQIDDAVSKVLTEDPHSIYRLELEKLRSLKPDVIVTQSLC
AVCAVPESTVRDVSCTFPFTCRVVSSDPHTLPELYDSILYIGDAIDSSTH
AIALVENLKSRMGRVRQLVSSITSKPRVVVIEWPDPPYAPGHWVPDMITA
ANGICTLGESGQKSKRVTWEQLFSLQADVIICAFCGYDLYRNQQECHKVS
STEEWRKFAKGAEVYATNASAYYSRPGNRLIDGTELLAFLLHRIEAFRPE
RGCASLLRDGNWIDASEL*
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spliced messenger RNA

>Gvermi7086.t1 ID=Gvermi7086.t1|Name=Gvermi7086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=957bp|location=Sequence derived from alignment at ScGOVlb_24229:1564352..1565308- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAATCCAACCAGTCGCCGCGGATTGTGTCTCTGCTTCCAAGTGC
CACCGAAATTCTGTTTGCAATTGGTGCCGGTCCGAACGTCGTAGGTGTTA
CGCACGAATGTGACTTTCCACCTGAAGCAACGCGTCTTCCGCATTGCACA
GCAAATCTTCTTCCTCCAAATCTATCTGCAAAGCAAATAGATGACGCCGT
TTCCAAAGTTCTCACTGAAGACCCTCATTCGATTTACAGGCTAGAACTAG
AGAAACTTCGAAGCTTGAAACCAGATGTGATAGTCACGCAAAGTTTGTGT
GCAGTTTGTGCAGTTCCAGAATCCACTGTTCGTGATGTTTCTTGTACTTT
CCCTTTCACTTGCCGCGTTGTATCATCGGATCCACACACCTTGCCCGAAT
TGTACGATTCTATTTTGTACATTGGTGATGCCATTGATAGCTCCACCCAT
GCTATTGCACTTGTTGAAAACCTCAAGAGTCGTATGGGTCGAGTACGTCA
GCTTGTTTCTTCGATCACAAGCAAGCCACGAGTTGTCGTCATTGAATGGC
CGGATCCTCCGTACGCTCCTGGCCATTGGGTGCCTGATATGATAACAGCT
GCCAATGGAATATGTACACTGGGGGAAAGTGGCCAGAAATCAAAACGAGT
GACATGGGAGCAACTTTTCTCCCTTCAAGCCGATGTTATAATTTGTGCGT
TTTGCGGATATGACTTGTACCGAAATCAACAAGAATGCCATAAAGTCAGC
TCAACCGAAGAATGGCGAAAGTTTGCAAAAGGGGCCGAAGTGTATGCGAC
GAATGCCAGTGCGTATTACTCTCGCCCTGGAAATAGATTGATTGACGGAA
CAGAGCTTCTCGCGTTTCTGCTGCATCGCATTGAGGCATTTAGACCCGAG
AGAGGCTGCGCTTCTTTGCTCCGTGACGGAAATTGGATTGATGCGTCTGA
ACTCTAA
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protein sequence of Gvermi7086.t1

>Gvermi7086.t1 ID=Gvermi7086.t1|Name=Gvermi7086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=319bp
MGKSNQSPRIVSLLPSATEILFAIGAGPNVVGVTHECDFPPEATRLPHCT
ANLLPPNLSAKQIDDAVSKVLTEDPHSIYRLELEKLRSLKPDVIVTQSLC
AVCAVPESTVRDVSCTFPFTCRVVSSDPHTLPELYDSILYIGDAIDSSTH
AIALVENLKSRMGRVRQLVSSITSKPRVVVIEWPDPPYAPGHWVPDMITA
ANGICTLGESGQKSKRVTWEQLFSLQADVIICAFCGYDLYRNQQECHKVS
STEEWRKFAKGAEVYATNASAYYSRPGNRLIDGTELLAFLLHRIEAFRPE
RGCASLLRDGNWIDASEL*
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mRNA from alignment at ScGOVlb_24229:1564352..1565308-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7086.t1 ID=Gvermi7086.t1|Name=Gvermi7086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=957bp|location=Sequence derived from alignment at ScGOVlb_24229:1564352..1565308- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAAATCCAACCAGTCGCCGCGGATTGTGTCTCTGCTTCCAAGTGC
CACCGAAATTCTGTTTGCAATTGGTGCCGGTCCGAACGTCGTAGGTGTTA
CGCACGAATGTGACTTTCCACCTGAAGCAACGCGTCTTCCGCATTGCACA
GCAAATCTTCTTCCTCCAAATCTATCTGCAAAGCAAATAGATGACGCCGT
TTCCAAAGTTCTCACTGAAGACCCTCATTCGATTTACAGGCTAGAACTAG
AGAAACTTCGAAGCTTGAAACCAGATGTGATAGTCACGCAAAGTTTGTGT
GCAGTTTGTGCAGTTCCAGAATCCACTGTTCGTGATGTTTCTTGTACTTT
CCCTTTCACTTGCCGCGTTGTATCATCGGATCCACACACCTTGCCCGAAT
TGTACGATTCTATTTTGTACATTGGTGATGCCATTGATAGCTCCACCCAT
GCTATTGCACTTGTTGAAAACCTCAAGAGTCGTATGGGTCGAGTACGTCA
GCTTGTTTCTTCGATCACAAGCAAGCCACGAGTTGTCGTCATTGAATGGC
CGGATCCTCCGTACGCTCCTGGCCATTGGGTGCCTGATATGATAACAGCT
GCCAATGGAATATGTACACTGGGGGAAAGTGGCCAGAAATCAAAACGAGT
GACATGGGAGCAACTTTTCTCCCTTCAAGCCGATGTTATAATTTGTGCGT
TTTGCGGATATGACTTGTACCGAAATCAACAAGAATGCCATAAAGTCAGC
TCAACCGAAGAATGGCGAAAGTTTGCAAAAGGGGCCGAAGTGTATGCGAC
GAATGCCAGTGCGTATTACTCTCGCCCTGGAAATAGATTGATTGACGGAA
CAGAGCTTCTCGCGTTTCTGCTGCATCGCATTGAGGCATTTAGACCCGAG
AGAGGCTGCGCTTCTTTGCTCCGTGACGGAAATTGGATTGATGCGTCTGA
ACTCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:1564352..1565308-

>Gvermi7086.t1 ID=Gvermi7086.t1|Name=Gvermi7086.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=957bp|location=Sequence derived from alignment at ScGOVlb_24229:1564352..1565308- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAAATCCAACCAGTCGCCGCGGATTGTGTCTCTGCTTCCAAGTGC
CACCGAAATTCTGTTTGCAATTGGTGCCGGTCCGAACGTCGTAGGTGTTA
CGCACGAATGTGACTTTCCACCTGAAGCAACGCGTCTTCCGCATTGCACA
GCAAATCTTCTTCCTCCAAATCTATCTGCAAAGCAAATAGATGACGCCGT
TTCCAAAGTTCTCACTGAAGACCCTCATTCGATTTACAGGCTAGAACTAG
AGAAACTTCGAAGCTTGAAACCAGATGTGATAGTCACGCAAAGTTTGTGT
GCAGTTTGTGCAGTTCCAGAATCCACTGTTCGTGATGTTTCTTGTACTTT
CCCTTTCACTTGCCGCGTTGTATCATCGGATCCACACACCTTGCCCGAAT
TGTACGATTCTATTTTGTACATTGGTGATGCCATTGATAGCTCCACCCAT
GCTATTGCACTTGTTGAAAACCTCAAGAGTCGTATGGGTCGAGTACGTCA
GCTTGTTTCTTCGATCACAAGCAAGCCACGAGTTGTCGTCATTGAATGGC
CGGATCCTCCGTACGCTCCTGGCCATTGGGTGCCTGATATGATAACAGCT
GCCAATGGAATATGTACACTGGGGGAAAGTGGCCAGAAATCAAAACGAGT
GACATGGGAGCAACTTTTCTCCCTTCAAGCCGATGTTATAATTTGTGCGT
TTTGCGGATATGACTTGTACCGAAATCAACAAGAATGCCATAAAGTCAGC
TCAACCGAAGAATGGCGAAAGTTTGCAAAAGGGGCCGAAGTGTATGCGAC
GAATGCCAGTGCGTATTACTCTCGCCCTGGAAATAGATTGATTGACGGAA
CAGAGCTTCTCGCGTTTCTGCTGCATCGCATTGAGGCATTTAGACCCGAG
AGAGGCTGCGCTTCTTTGCTCCGTGACGGAAATTGGATTGATGCGTCTGA
ACTCTAA
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