Gvermi7085.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7085.t1
Unique Name	Gvermi7085.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	424

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:1561828..1563099 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1122179.KB890434_gene841
Max annot lvl	976\|Bacteroidetes
Evalue	1.39e-17
EggNOG OGs	COG3291@1\|root,COG3291@2\|Bacteria,4NGJJ@976\|Bacteroidetes
Description	cellulose binding
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7085	Gvermi7085	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 1561828..1563099 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7085.t1.start1	Gvermi7085.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 1561828..1561830 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7085.t1.CDS1	Gvermi7085.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 1561828..1563099 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7085.t1.exon1	Gvermi7085.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 1561828..1563099 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7085.t1.stop1	Gvermi7085.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 1563097..1563099 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7085.t1	Gvermi7085.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 1561828..1563099 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:1561828..1563099+
coding sequence from alignment at ScGOVlb_24229:1561828..1563099+

mRNA sequence

>Gvermi7085.t1 ID=Gvermi7085.t1|Name=Gvermi7085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=424bp
MQQLLNLPQHVLYNPLHTFTRELAHERRPDGSVAPRYLTAPQQTTTDLEI
LRSMGLHVPGVDPEHLLHTTARQDTQHCINARTPTLVIGDKTRFLISYSP
NTPDSIKRPVEFSVKKWADEFDSDAPLRICFAWKAIGDETLGATSTPFIT
MGLSSKGLRDDAIYNPALAASLQGEDPISDNSKFHVYMVVNSAISWHFDI
DTRAPNGKYDLATTVLHELTHGLFFTGTLKVQRDTVPEAAFASEGPGRFD
QFMQAEGKIGVVRSCRKPKDLFKAITSPQLRFVDKRSGAFFGLYAPFPYA
KGSSVYHFNNTNSLNRDCDRMGIARSQCSDLMTHELLTRYTQRNLGETTL
RVYRAMRSSAAGPTKGSVCDVPDYSSRQTMHSATNNAGAGPFKLQLWSIV
TVGVIGAIGVVFVVGAVVSTLSR*

spliced messenger RNA

>Gvermi7085.t1 ID=Gvermi7085.t1|Name=Gvermi7085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at ScGOVlb_24229:1561828..1563099+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACAACTCCTCAATCTTCCCCAACATGTACTTTACAACCCTCTTCA
CACCTTTACTCGAGAATTAGCGCACGAGCGCCGACCGGACGGTTCCGTCG
CTCCGCGATATTTAACAGCGCCCCAACAAACAACTACTGACTTGGAAATC
CTGCGTTCCATGGGTTTGCATGTTCCGGGTGTGGATCCGGAACATCTACT
ACACACAACTGCCCGACAAGACACCCAACACTGCATCAACGCAAGAACTC
CCACTTTAGTCATAGGCGATAAGACCCGCTTTTTGATCAGTTACTCCCCC
AACACCCCCGACTCCATCAAACGCCCCGTCGAGTTTTCCGTCAAAAAGTG
GGCCGACGAATTTGACAGCGATGCTCCGCTGCGCATCTGCTTTGCTTGGA
AAGCCATTGGCGACGAAACGCTCGGTGCTACCAGCACCCCGTTTATCACC
ATGGGACTTAGTTCCAAAGGACTTCGAGATGACGCCATTTACAATCCCGC
TCTTGCTGCATCGCTACAGGGAGAGGACCCCATCAGCGACAACAGCAAGT
TTCATGTATACATGGTTGTCAACAGCGCCATTTCTTGGCATTTTGATATC
GATACTCGAGCACCAAACGGAAAGTATGACCTGGCCACCACCGTGCTGCA
TGAGCTCACGCATGGCTTGTTTTTCACGGGTACTCTGAAGGTACAGCGCG
ACACTGTACCAGAGGCAGCATTTGCGAGTGAAGGCCCTGGTCGCTTTGAT
CAATTCATGCAGGCTGAGGGTAAGATCGGCGTCGTAAGATCGTGTCGAAA
GCCAAAAGATTTGTTCAAGGCCATTACTAGTCCCCAATTGCGTTTTGTTG
ACAAGCGCAGTGGGGCATTTTTCGGACTTTACGCCCCGTTCCCGTATGCG
AAGGGCTCGTCTGTGTACCATTTTAACAACACCAATTCCCTTAACAGAGA
TTGTGATCGAATGGGCATTGCACGGTCTCAATGTTCAGACCTTATGACTC
ATGAACTACTGACTAGGTACACCCAGCGGAATCTTGGAGAAACTACTCTG
AGGGTGTACAGAGCGATGCGAAGTTCTGCCGCAGGCCCTACAAAGGGTAG
CGTTTGTGACGTTCCGGACTATTCTAGCAGGCAAACTATGCATTCTGCGA
CCAACAACGCCGGTGCGGGTCCGTTCAAGTTGCAGCTTTGGTCCATTGTA
ACTGTCGGTGTCATCGGCGCCATAGGGGTTGTCTTCGTCGTTGGTGCCGT
TGTCAGCACCTTATCGCGATAG

protein sequence of Gvermi7085.t1

>Gvermi7085.t1 ID=Gvermi7085.t1|Name=Gvermi7085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=424bp
MQQLLNLPQHVLYNPLHTFTRELAHERRPDGSVAPRYLTAPQQTTTDLEI
LRSMGLHVPGVDPEHLLHTTARQDTQHCINARTPTLVIGDKTRFLISYSP
NTPDSIKRPVEFSVKKWADEFDSDAPLRICFAWKAIGDETLGATSTPFIT
MGLSSKGLRDDAIYNPALAASLQGEDPISDNSKFHVYMVVNSAISWHFDI
DTRAPNGKYDLATTVLHELTHGLFFTGTLKVQRDTVPEAAFASEGPGRFD
QFMQAEGKIGVVRSCRKPKDLFKAITSPQLRFVDKRSGAFFGLYAPFPYA
KGSSVYHFNNTNSLNRDCDRMGIARSQCSDLMTHELLTRYTQRNLGETTL
RVYRAMRSSAAGPTKGSVCDVPDYSSRQTMHSATNNAGAGPFKLQLWSIV
TVGVIGAIGVVFVVGAVVSTLSR*

mRNA from alignment at ScGOVlb_24229:1561828..1563099+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7085.t1 ID=Gvermi7085.t1|Name=Gvermi7085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at ScGOVlb_24229:1561828..1563099+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACAACTCCTCAATCTTCCCCAACATGTACTTTACAACCCTCTTCA
CACCTTTACTCGAGAATTAGCGCACGAGCGCCGACCGGACGGTTCCGTCG
CTCCGCGATATTTAACAGCGCCCCAACAAACAACTACTGACTTGGAAATC
CTGCGTTCCATGGGTTTGCATGTTCCGGGTGTGGATCCGGAACATCTACT
ACACACAACTGCCCGACAAGACACCCAACACTGCATCAACGCAAGAACTC
CCACTTTAGTCATAGGCGATAAGACCCGCTTTTTGATCAGTTACTCCCCC
AACACCCCCGACTCCATCAAACGCCCCGTCGAGTTTTCCGTCAAAAAGTG
GGCCGACGAATTTGACAGCGATGCTCCGCTGCGCATCTGCTTTGCTTGGA
AAGCCATTGGCGACGAAACGCTCGGTGCTACCAGCACCCCGTTTATCACC
ATGGGACTTAGTTCCAAAGGACTTCGAGATGACGCCATTTACAATCCCGC
TCTTGCTGCATCGCTACAGGGAGAGGACCCCATCAGCGACAACAGCAAGT
TTCATGTATACATGGTTGTCAACAGCGCCATTTCTTGGCATTTTGATATC
GATACTCGAGCACCAAACGGAAAGTATGACCTGGCCACCACCGTGCTGCA
TGAGCTCACGCATGGCTTGTTTTTCACGGGTACTCTGAAGGTACAGCGCG
ACACTGTACCAGAGGCAGCATTTGCGAGTGAAGGCCCTGGTCGCTTTGAT
CAATTCATGCAGGCTGAGGGTAAGATCGGCGTCGTAAGATCGTGTCGAAA
GCCAAAAGATTTGTTCAAGGCCATTACTAGTCCCCAATTGCGTTTTGTTG
ACAAGCGCAGTGGGGCATTTTTCGGACTTTACGCCCCGTTCCCGTATGCG
AAGGGCTCGTCTGTGTACCATTTTAACAACACCAATTCCCTTAACAGAGA
TTGTGATCGAATGGGCATTGCACGGTCTCAATGTTCAGACCTTATGACTC
ATGAACTACTGACTAGGTACACCCAGCGGAATCTTGGAGAAACTACTCTG
AGGGTGTACAGAGCGATGCGAAGTTCTGCCGCAGGCCCTACAAAGGGTAG
CGTTTGTGACGTTCCGGACTATTCTAGCAGGCAAACTATGCATTCTGCGA
CCAACAACGCCGGTGCGGGTCCGTTCAAGTTGCAGCTTTGGTCCATTGTA
ACTGTCGGTGTCATCGGCGCCATAGGGGTTGTCTTCGTCGTTGGTGCCGT
TGTCAGCACCTTATCGCGATAG

Coding sequence (CDS) from alignment at ScGOVlb_24229:1561828..1563099+

>Gvermi7085.t1 ID=Gvermi7085.t1|Name=Gvermi7085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1272bp|location=Sequence derived from alignment at ScGOVlb_24229:1561828..1563099+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACAACTCCTCAATCTTCCCCAACATGTACTTTACAACCCTCTTCA
CACCTTTACTCGAGAATTAGCGCACGAGCGCCGACCGGACGGTTCCGTCG
CTCCGCGATATTTAACAGCGCCCCAACAAACAACTACTGACTTGGAAATC
CTGCGTTCCATGGGTTTGCATGTTCCGGGTGTGGATCCGGAACATCTACT
ACACACAACTGCCCGACAAGACACCCAACACTGCATCAACGCAAGAACTC
CCACTTTAGTCATAGGCGATAAGACCCGCTTTTTGATCAGTTACTCCCCC
AACACCCCCGACTCCATCAAACGCCCCGTCGAGTTTTCCGTCAAAAAGTG
GGCCGACGAATTTGACAGCGATGCTCCGCTGCGCATCTGCTTTGCTTGGA
AAGCCATTGGCGACGAAACGCTCGGTGCTACCAGCACCCCGTTTATCACC
ATGGGACTTAGTTCCAAAGGACTTCGAGATGACGCCATTTACAATCCCGC
TCTTGCTGCATCGCTACAGGGAGAGGACCCCATCAGCGACAACAGCAAGT
TTCATGTATACATGGTTGTCAACAGCGCCATTTCTTGGCATTTTGATATC
GATACTCGAGCACCAAACGGAAAGTATGACCTGGCCACCACCGTGCTGCA
TGAGCTCACGCATGGCTTGTTTTTCACGGGTACTCTGAAGGTACAGCGCG
ACACTGTACCAGAGGCAGCATTTGCGAGTGAAGGCCCTGGTCGCTTTGAT
CAATTCATGCAGGCTGAGGGTAAGATCGGCGTCGTAAGATCGTGTCGAAA
GCCAAAAGATTTGTTCAAGGCCATTACTAGTCCCCAATTGCGTTTTGTTG
ACAAGCGCAGTGGGGCATTTTTCGGACTTTACGCCCCGTTCCCGTATGCG
AAGGGCTCGTCTGTGTACCATTTTAACAACACCAATTCCCTTAACAGAGA
TTGTGATCGAATGGGCATTGCACGGTCTCAATGTTCAGACCTTATGACTC
ATGAACTACTGACTAGGTACACCCAGCGGAATCTTGGAGAAACTACTCTG
AGGGTGTACAGAGCGATGCGAAGTTCTGCCGCAGGCCCTACAAAGGGTAG
CGTTTGTGACGTTCCGGACTATTCTAGCAGGCAAACTATGCATTCTGCGA
CCAACAACGCCGGTGCGGGTCCGTTCAAGTTGCAGCTTTGGTCCATTGTA
ACTGTCGGTGTCATCGGCGCCATAGGGGTTGTCTTCGTCGTTGGTGCCGT
TGTCAGCACCTTATCGCGATAG