Gvermi7083.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7083.t1
Unique Name	Gvermi7083.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	348

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:1556397..1557440 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7719.XP_002128319.1
Preferred name	RPAP3
PFAMs	RPAP3_C,TPR_1,TPR_11,TPR_2,TPR_7,TPR_8
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00045
KEGG ko	ko:K00237
KEGG Reaction	R02164
KEGG Pathway	ko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG Module	M00009,M00011,M00148
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0010941,GO:0030544,GO:0031072,GO:0032991,GO:0042752,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043523,GO:0043524,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050795,GO:0051879,GO:0060548,GO:0065007,GO:0097255,GO:1901214,GO:1901215,GO:1904059,GO:2000671,GO:2000672
Evalue	3.69e-13
EggNOG OGs	COG0457@1\|root,KOG4648@2759\|Eukaryota,38GIQ@33154\|Opisthokonta,3BEKH@33208\|Metazoa,3CVSY@33213\|Bilateria,4812P@7711\|Chordata
Description	Potential Monad-binding region of RPAP3
COG category	S
BRITE	ko00000,ko00001,ko00002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7083	Gvermi7083	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 1556397..1557440 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7083.t1.stop1	Gvermi7083.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 1556397..1556399 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7083.t1.CDS1	Gvermi7083.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 1556397..1557440 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7083.t1.exon1	Gvermi7083.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 1556397..1557440 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7083.t1.start1	Gvermi7083.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 1557438..1557440 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7083.t1	Gvermi7083.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 1556397..1557440 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:1556397..1557440-
coding sequence from alignment at ScGOVlb_24229:1556397..1557440-

mRNA sequence

>Gvermi7083.t1 ID=Gvermi7083.t1|Name=Gvermi7083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=348bp
MDLGTEEQLLQLSLTGRLPPSLQRSFDEEKEKGNNAYRSGRYHEAVQHYS
AAESINPMSPVPPANRAMVFLKLNDYERAKAEAAIAYELHESLPQEDRSK
RLCAKILLRRATANKELLLFALAAEDYQAVLDLEDNATAKAELNMLRERY
GVPPPILRSRSRNYTGSDSKIKIVSESNDHTNGVAPPPKISPPSLPFSEI
RDETEILQLSNDTMQNLVLKWSSNEPHTAADFERSWRSLKEDDLAQAKYL
LEVVGPQRIERGLLGEILTPQLMQRVVAVLSKAVAQNRSCGTSAAKILIA
FSRVSRFDMILMFLSSMERQEITSFINSLERIDVAPALIESLRASYL*

spliced messenger RNA

>Gvermi7083.t1 ID=Gvermi7083.t1|Name=Gvermi7083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at ScGOVlb_24229:1556397..1557440- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTAGGAACTGAGGAACAGCTTCTACAACTTAGTCTGACCGGCAG
GCTACCCCCATCGCTACAAAGATCATTCGATGAAGAAAAAGAGAAAGGAA
ACAACGCGTATCGAAGCGGTCGCTATCATGAAGCGGTACAACACTACTCA
GCAGCAGAATCCATAAATCCGATGAGCCCCGTCCCCCCTGCTAATCGGGC
CATGGTGTTCCTCAAGTTGAACGATTACGAGCGTGCCAAAGCTGAAGCAG
CAATCGCTTACGAGCTTCATGAATCCCTACCTCAAGAAGACCGCAGCAAA
CGTCTCTGTGCCAAGATTCTGCTAAGACGGGCCACAGCGAACAAAGAATT
GTTGCTTTTTGCTCTTGCAGCAGAAGATTATCAAGCTGTTCTCGATCTCG
AAGATAATGCAACTGCGAAAGCTGAGCTCAATATGCTGCGAGAAAGATAT
GGCGTGCCGCCTCCGATTCTGCGCTCTCGGTCAAGAAACTACACTGGATC
AGATTCGAAGATAAAAATTGTCTCAGAAAGCAACGATCACACAAACGGAG
TTGCTCCACCACCTAAAATTTCACCGCCATCGCTACCATTCTCAGAAATT
CGAGATGAAACCGAGATACTCCAGCTATCCAATGACACAATGCAGAACCT
TGTGCTGAAATGGAGCTCCAACGAACCCCACACTGCTGCCGATTTCGAGA
GATCTTGGAGATCTCTTAAAGAAGATGACCTAGCCCAAGCAAAGTACCTT
CTCGAAGTTGTTGGGCCTCAAAGAATCGAGCGTGGGCTTCTCGGAGAAAT
ACTGACTCCCCAGCTCATGCAGCGTGTGGTTGCCGTGTTGTCCAAGGCTG
TTGCGCAGAACCGGTCTTGTGGCACATCAGCAGCAAAGATTTTGATAGCA
TTTTCTCGTGTATCCCGCTTTGATATGATTCTGATGTTTTTGTCATCGAT
GGAGAGACAAGAAATAACGAGTTTCATCAACTCGTTGGAGAGGATTGATG
TGGCTCCGGCACTGATTGAAAGTTTACGAGCTTCATACTTGTAG

protein sequence of Gvermi7083.t1

>Gvermi7083.t1 ID=Gvermi7083.t1|Name=Gvermi7083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=348bp
MDLGTEEQLLQLSLTGRLPPSLQRSFDEEKEKGNNAYRSGRYHEAVQHYS
AAESINPMSPVPPANRAMVFLKLNDYERAKAEAAIAYELHESLPQEDRSK
RLCAKILLRRATANKELLLFALAAEDYQAVLDLEDNATAKAELNMLRERY
GVPPPILRSRSRNYTGSDSKIKIVSESNDHTNGVAPPPKISPPSLPFSEI
RDETEILQLSNDTMQNLVLKWSSNEPHTAADFERSWRSLKEDDLAQAKYL
LEVVGPQRIERGLLGEILTPQLMQRVVAVLSKAVAQNRSCGTSAAKILIA
FSRVSRFDMILMFLSSMERQEITSFINSLERIDVAPALIESLRASYL*

mRNA from alignment at ScGOVlb_24229:1556397..1557440-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7083.t1 ID=Gvermi7083.t1|Name=Gvermi7083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at ScGOVlb_24229:1556397..1557440- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTTAGGAACTGAGGAACAGCTTCTACAACTTAGTCTGACCGGCAG
GCTACCCCCATCGCTACAAAGATCATTCGATGAAGAAAAAGAGAAAGGAA
ACAACGCGTATCGAAGCGGTCGCTATCATGAAGCGGTACAACACTACTCA
GCAGCAGAATCCATAAATCCGATGAGCCCCGTCCCCCCTGCTAATCGGGC
CATGGTGTTCCTCAAGTTGAACGATTACGAGCGTGCCAAAGCTGAAGCAG
CAATCGCTTACGAGCTTCATGAATCCCTACCTCAAGAAGACCGCAGCAAA
CGTCTCTGTGCCAAGATTCTGCTAAGACGGGCCACAGCGAACAAAGAATT
GTTGCTTTTTGCTCTTGCAGCAGAAGATTATCAAGCTGTTCTCGATCTCG
AAGATAATGCAACTGCGAAAGCTGAGCTCAATATGCTGCGAGAAAGATAT
GGCGTGCCGCCTCCGATTCTGCGCTCTCGGTCAAGAAACTACACTGGATC
AGATTCGAAGATAAAAATTGTCTCAGAAAGCAACGATCACACAAACGGAG
TTGCTCCACCACCTAAAATTTCACCGCCATCGCTACCATTCTCAGAAATT
CGAGATGAAACCGAGATACTCCAGCTATCCAATGACACAATGCAGAACCT
TGTGCTGAAATGGAGCTCCAACGAACCCCACACTGCTGCCGATTTCGAGA
GATCTTGGAGATCTCTTAAAGAAGATGACCTAGCCCAAGCAAAGTACCTT
CTCGAAGTTGTTGGGCCTCAAAGAATCGAGCGTGGGCTTCTCGGAGAAAT
ACTGACTCCCCAGCTCATGCAGCGTGTGGTTGCCGTGTTGTCCAAGGCTG
TTGCGCAGAACCGGTCTTGTGGCACATCAGCAGCAAAGATTTTGATAGCA
TTTTCTCGTGTATCCCGCTTTGATATGATTCTGATGTTTTTGTCATCGAT
GGAGAGACAAGAAATAACGAGTTTCATCAACTCGTTGGAGAGGATTGATG
TGGCTCCGGCACTGATTGAAAGTTTACGAGCTTCATACTTGTAG

Coding sequence (CDS) from alignment at ScGOVlb_24229:1556397..1557440-

>Gvermi7083.t1 ID=Gvermi7083.t1|Name=Gvermi7083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1044bp|location=Sequence derived from alignment at ScGOVlb_24229:1556397..1557440- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTTAGGAACTGAGGAACAGCTTCTACAACTTAGTCTGACCGGCAG
GCTACCCCCATCGCTACAAAGATCATTCGATGAAGAAAAAGAGAAAGGAA
ACAACGCGTATCGAAGCGGTCGCTATCATGAAGCGGTACAACACTACTCA
GCAGCAGAATCCATAAATCCGATGAGCCCCGTCCCCCCTGCTAATCGGGC
CATGGTGTTCCTCAAGTTGAACGATTACGAGCGTGCCAAAGCTGAAGCAG
CAATCGCTTACGAGCTTCATGAATCCCTACCTCAAGAAGACCGCAGCAAA
CGTCTCTGTGCCAAGATTCTGCTAAGACGGGCCACAGCGAACAAAGAATT
GTTGCTTTTTGCTCTTGCAGCAGAAGATTATCAAGCTGTTCTCGATCTCG
AAGATAATGCAACTGCGAAAGCTGAGCTCAATATGCTGCGAGAAAGATAT
GGCGTGCCGCCTCCGATTCTGCGCTCTCGGTCAAGAAACTACACTGGATC
AGATTCGAAGATAAAAATTGTCTCAGAAAGCAACGATCACACAAACGGAG
TTGCTCCACCACCTAAAATTTCACCGCCATCGCTACCATTCTCAGAAATT
CGAGATGAAACCGAGATACTCCAGCTATCCAATGACACAATGCAGAACCT
TGTGCTGAAATGGAGCTCCAACGAACCCCACACTGCTGCCGATTTCGAGA
GATCTTGGAGATCTCTTAAAGAAGATGACCTAGCCCAAGCAAAGTACCTT
CTCGAAGTTGTTGGGCCTCAAAGAATCGAGCGTGGGCTTCTCGGAGAAAT
ACTGACTCCCCAGCTCATGCAGCGTGTGGTTGCCGTGTTGTCCAAGGCTG
TTGCGCAGAACCGGTCTTGTGGCACATCAGCAGCAAAGATTTTGATAGCA
TTTTCTCGTGTATCCCGCTTTGATATGATTCTGATGTTTTTGTCATCGAT
GGAGAGACAAGAAATAACGAGTTTCATCAACTCGTTGGAGAGGATTGATG
TGGCTCCGGCACTGATTGAAAGTTTACGAGCTTCATACTTGTAG